Wall clock time and date at job start Sun Mar 29 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 H 1.09005 * 109.47143 * 178.97248 * 3 2 1 5 5 C 1.50702 * 109.46976 * 58.97457 * 3 2 1 6 6 H 1.07997 * 120.00201 * 240.00099 * 5 3 2 7 7 C 1.37877 * 119.99961 * 59.99502 * 5 3 2 8 8 N 1.31512 * 120.00125 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00183 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46981 * 90.00081 * 9 7 5 11 11 H 1.48496 * 109.47097 * 210.00518 * 9 7 5 12 12 H 1.48499 * 109.47037 * 330.00546 * 9 7 5 13 13 N 1.46897 * 109.47162 * 298.97765 * 3 2 1 14 14 C 1.48233 * 110.99812 * 300.71764 * 13 3 2 15 15 C 1.53909 * 104.03061 * 214.40376 * 14 13 3 16 16 H 1.08996 * 109.20536 * 282.74108 * 15 14 13 17 17 C 1.50749 * 112.99841 * 161.52835 * 15 14 13 18 18 C 1.52822 * 111.73401 * 294.90034 * 17 15 14 19 19 C 1.53335 * 108.09681 * 301.06891 * 18 17 15 20 20 C 1.52592 * 108.41476 * 64.10242 * 19 18 17 21 21 C 1.53005 * 111.04325 * 297.65547 * 20 19 18 22 22 H 1.09002 * 112.53246 * 286.39987 * 21 20 19 23 23 C 1.47594 * 110.99742 * 179.88410 * 13 3 2 24 24 H 1.08996 * 109.47042 * 64.03077 * 1 2 3 25 25 H 1.08999 * 109.46777 * 184.03366 * 1 2 3 26 26 H 1.09002 * 109.46967 * 304.02519 * 1 2 3 27 27 H 1.09007 * 109.47221 * 240.00480 * 2 1 3 28 28 H 1.09005 * 109.47666 * 120.00529 * 2 1 3 29 29 H 0.97004 * 120.00599 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.52017 * 333.03776 * 14 13 3 31 31 H 1.09003 * 110.51700 * 95.63105 * 14 13 3 32 32 H 1.09004 * 109.02404 * 55.48026 * 17 15 14 33 33 H 1.09001 * 109.03251 * 174.31592 * 17 15 14 34 34 H 1.08999 * 109.73592 * 60.71180 * 18 17 15 35 35 H 1.09001 * 109.73920 * 181.41886 * 18 17 15 36 36 H 1.08997 * 109.67417 * 183.83643 * 19 18 17 37 37 H 1.09000 * 109.67438 * 304.33659 * 19 18 17 38 38 H 1.09002 * 109.16139 * 177.25154 * 20 19 18 39 39 H 1.09000 * 109.16142 * 58.05648 * 20 19 18 40 40 H 1.08999 * 109.97304 * 1.88162 * 23 13 3 41 41 H 1.09005 * 109.96756 * 240.61964 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0184 5 6 1.5170 2.1602 1.2176 6 1 0.8979 3.0376 1.1028 7 6 1.8288 1.6965 2.4781 8 7 2.5830 0.6283 2.6178 9 14 1.1800 2.5857 3.9873 10 1 -0.1347 2.0125 4.3724 11 1 2.1393 2.4217 5.1089 12 1 1.0196 4.0297 3.6803 13 7 1.5707 2.1278 -1.2116 14 6 2.0524 1.4384 -2.4322 15 6 2.2922 2.5804 -3.4357 16 1 1.3347 2.9108 -3.8384 17 6 3.1879 2.1803 -4.5803 18 6 4.6039 1.8574 -4.1047 19 6 5.1685 3.1024 -3.4101 20 6 4.3283 3.3840 -2.1679 21 6 2.8773 3.6911 -2.5440 22 1 2.7612 4.6797 -2.9883 23 6 2.0423 3.5260 -1.2446 24 1 -0.3633 0.4500 -0.9239 25 1 -0.3633 -1.0251 0.0723 26 1 -0.3633 0.5751 0.8517 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.8027 0.3022 3.5046 30 1 2.9821 0.9068 -2.2291 31 1 1.2943 0.7506 -2.8069 32 1 2.7682 1.3012 -5.0695 33 1 3.2324 2.9981 -5.2995 34 1 4.5752 1.0250 -3.4016 35 1 5.2289 1.5973 -4.9590 36 1 6.2038 2.9231 -3.1201 37 1 5.1196 3.9547 -4.0879 38 1 4.7490 4.2384 -1.6375 39 1 4.3517 2.5117 -1.5148 40 1 2.6650 3.7295 -0.3735 41 1 1.1904 4.2059 -1.2607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309930676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:36 Heat of formation + Delta-G solvation = -35.674068 kcal Electronic energy + Delta-G solvation = -18419.579293 eV Core-core repulsion = 15911.381576 eV Total energy + Delta-G solvation = -2508.197718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20583 -37.61221 -35.02814 -33.25066 -32.51618 -30.70266 -28.59149 -27.51482 -25.48253 -23.79919 -22.94189 -21.83555 -20.85491 -19.39353 -18.01939 -17.01729 -16.94563 -16.01740 -15.45781 -15.17757 -15.07604 -14.75782 -14.37180 -14.10776 -13.83823 -13.52825 -13.18452 -12.86685 -12.82180 -12.64972 -12.48551 -12.42918 -12.32265 -12.11895 -12.03775 -11.78174 -11.53705 -11.15305 -11.10170 -10.84838 -10.81833 -10.74272 -10.47758 -8.78697 -8.08149 -6.17419 1.39632 1.40785 1.50221 2.42434 3.19741 3.47890 3.66359 3.73434 3.93592 4.22162 4.30090 4.34783 4.50526 4.56746 4.61481 4.64666 4.68338 4.73878 4.82128 4.85395 4.90635 5.00842 5.06502 5.13441 5.17292 5.18516 5.26430 5.36378 5.37950 5.44117 5.46401 5.51574 5.54767 5.64323 5.74734 5.77155 5.87589 6.31694 6.47255 6.77163 6.96581 7.50029 8.97371 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031537 B = 0.007800 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.626924 B = 3588.830734 C = 3886.079782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C 0.225 3.775 4 H -0.046 1.046 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.528 5.528 14 C 0.051 3.949 15 C -0.083 4.083 16 H 0.078 0.922 17 C -0.099 4.099 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.094 4.094 22 H 0.103 0.897 23 C 0.052 3.948 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.259 0.741 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.024 0.976 40 H 0.033 0.967 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 4.054 -13.425 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C 0.118 3.882 4 H -0.028 1.028 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.253 5.253 14 C -0.077 4.077 15 C -0.102 4.102 16 H 0.096 0.904 17 C -0.137 4.137 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.149 4.149 21 C -0.113 4.113 22 H 0.121 0.879 23 C -0.076 4.076 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.670 3.929 -13.242 13.913 hybrid contribution 0.669 0.071 1.590 1.727 sum 2.339 4.000 -11.652 12.539 Atomic orbital electron populations 1.21311 0.95764 0.98466 1.00868 1.21409 0.96484 0.97681 0.98852 1.19148 0.90050 0.91681 0.87342 1.02814 1.21246 1.30385 1.11516 0.90857 0.93091 1.25613 0.95586 0.95838 1.01486 1.70017 1.38457 1.24336 1.23189 0.85667 0.78136 0.79152 0.79380 1.20180 1.21104 1.19513 1.63717 1.57604 1.01791 1.02147 1.22883 0.97248 0.96818 0.90756 1.21390 0.99581 0.94337 0.94938 0.90383 1.20890 0.94247 1.02092 0.96482 1.21604 0.96818 0.97247 1.00128 1.21488 0.98172 0.98775 0.96360 1.21493 0.95342 1.00021 0.98063 1.22385 0.94253 0.99664 0.95015 0.87908 1.22957 0.97048 0.90916 0.96672 0.93110 0.94597 0.94529 0.95802 0.92268 0.93168 0.95804 0.91477 0.91329 0.90014 0.94148 0.90010 0.92100 0.90078 0.92533 0.95687 0.94833 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 9.52 71.98 0.69 -4.14 16 2 C -0.11 -5.27 5.25 30.59 0.16 -5.11 16 3 C 0.23 11.65 1.36 44.17 0.06 11.72 16 4 H -0.05 -2.69 7.48 -2.38 -0.02 -2.71 16 5 C -0.50 -27.92 6.27 25.60 0.16 -27.76 16 6 H 0.05 2.87 7.43 -2.91 -0.02 2.85 16 7 C 0.01 0.73 5.30 84.66 0.45 1.18 16 8 N -0.92 -53.89 11.33 21.45 0.24 -53.65 16 9 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 13 N -0.53 -22.94 4.39 -863.20 -3.79 -26.73 16 14 C 0.05 1.85 4.33 86.35 0.37 2.22 16 15 C -0.08 -2.36 2.81 -10.88 -0.03 -2.39 16 16 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.10 -2.18 5.37 29.80 0.16 -2.02 16 18 C -0.12 -2.78 5.81 30.65 0.18 -2.60 16 19 C -0.11 -2.62 5.93 30.57 0.18 -2.44 16 20 C -0.11 -3.46 4.62 30.46 0.14 -3.32 16 21 C -0.09 -2.83 3.60 -9.65 -0.03 -2.87 16 22 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 23 C 0.05 2.07 5.38 86.97 0.47 2.54 16 24 H 0.05 2.15 7.76 -2.39 -0.02 2.13 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.80 7.04 -2.39 -0.02 1.78 16 27 H 0.02 1.09 7.00 -2.38 -0.02 1.07 16 28 H 0.06 3.31 6.10 -2.38 -0.01 3.30 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.02 0.95 5.58 -2.39 -0.01 0.93 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.13 6.80 -2.39 -0.02 1.12 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.02 0.97 6.52 -2.39 -0.02 0.95 16 40 H 0.03 1.53 6.60 -2.39 -0.02 1.51 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -60.96 298.31 2.41 -58.56 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.97 Total: 10.16 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 2.95 Total: -34.98 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -3.54 Total: -80.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.96 2.41 -58.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309930676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.883 kcal (2) G-P(sol) polarization free energy of solvation -60.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds