Wall clock time and date at job start Sun Mar 29 2020 22:37:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53002 * 109.46927 * 2 1
4 4 H 1.08998 * 109.47124 * 178.85699 * 3 2 1
5 5 C 1.50700 * 109.47205 * 58.85034 * 3 2 1
6 6 H 1.08000 * 119.99447 * 239.99992 * 5 3 2
7 7 C 1.37877 * 120.00065 * 59.72571 * 5 3 2
8 8 N 1.31509 * 119.99839 * 0.27454 * 7 5 3
9 9 Si 1.86792 * 119.99991 * 180.27031 * 7 5 3
10 10 H 1.48506 * 109.47036 * 60.00404 * 9 7 5
11 11 H 1.48501 * 109.47317 * 179.97438 * 9 7 5
12 12 H 1.48498 * 109.47741 * 300.00510 * 9 7 5
13 13 N 1.46903 * 109.46567 * 298.84985 * 3 2 1
14 14 C 1.49158 * 111.00391 * 300.66413 * 13 3 2
15 15 C 1.53332 * 103.12644 * 212.63283 * 14 13 3
16 16 H 1.09000 * 110.99188 * 285.41760 * 15 14 13
17 17 C 1.51711 * 116.73751 * 157.00381 * 15 14 13
18 18 C 1.53777 * 107.09037 * 184.30216 * 17 15 14
19 19 C 1.52539 * 111.64529 * 57.68356 * 18 17 15
20 20 C 1.52464 * 111.72102 * 306.17674 * 19 18 17
21 21 C 1.51538 * 107.79905 * 56.87843 * 20 19 18
22 22 H 1.09000 * 110.71737 * 55.19538 * 21 20 19
23 23 C 1.48822 * 110.99573 * 180.38994 * 13 3 2
24 24 H 1.08996 * 109.47520 * 63.99782 * 1 2 3
25 25 H 1.08998 * 109.47142 * 184.00005 * 1 2 3
26 26 H 1.09005 * 109.47420 * 303.99677 * 1 2 3
27 27 H 1.08992 * 109.46961 * 239.99733 * 2 1 3
28 28 H 1.09004 * 109.46598 * 119.99491 * 2 1 3
29 29 H 0.97003 * 120.00314 * 179.97438 * 8 7 5
30 30 H 1.08999 * 110.68319 * 331.04000 * 14 13 3
31 31 H 1.08998 * 110.68556 * 94.22285 * 14 13 3
32 32 H 1.09001 * 109.93290 * 303.69722 * 17 15 14
33 33 H 1.09003 * 109.93089 * 64.82718 * 17 15 14
34 34 H 1.09008 * 109.04887 * 178.23730 * 18 17 15
35 35 H 1.09001 * 109.05118 * 297.19573 * 18 17 15
36 36 H 1.08998 * 109.05449 * 66.43847 * 19 18 17
37 37 H 1.09004 * 109.05504 * 185.35107 * 19 18 17
38 38 H 1.08997 * 109.16517 * 297.51153 * 20 19 18
39 39 H 1.08999 * 110.01351 * 176.73661 * 20 19 18
40 40 H 1.09009 * 110.21042 * 237.89096 * 23 13 3
41 41 H 1.09004 * 110.21327 * 359.79310 * 23 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1298 1.4426 0.0205
5 6 1.5145 2.1611 1.2160
6 1 0.8956 3.0385 1.0992
7 6 1.8191 1.6952 2.4774
8 7 2.5728 0.6269 2.6194
9 14 1.1616 2.5815 3.9844
10 1 -0.3231 2.5807 3.9506
11 1 1.6285 1.8862 5.2107
12 1 1.6557 3.9819 3.9902
13 7 1.5730 2.1268 -1.2132
14 6 2.0614 1.4330 -2.4399
15 6 2.2510 2.5818 -3.4376
16 1 1.2905 2.9386 -3.8093
17 6 3.2182 2.3400 -4.5812
18 6 3.3210 3.6550 -5.3717
19 6 3.7794 4.8094 -4.4863
20 6 2.8994 4.9562 -3.2500
21 6 2.9214 3.6359 -2.5064
22 1 3.9451 3.3377 -2.2803
23 6 2.0586 3.5331 -1.2525
24 1 -0.3634 0.4505 -0.9236
25 1 -0.3633 -1.0251 0.0717
26 1 -0.3634 0.5746 0.8520
27 1 1.8933 -0.5138 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 2.7874 0.2993 3.5069
30 1 3.0092 0.9306 -2.2465
31 1 1.3167 0.7254 -2.8043
32 1 4.1970 2.0652 -4.1882
33 1 2.8405 1.5462 -5.2257
34 1 4.0346 3.5259 -6.1856
35 1 2.3439 3.8956 -5.7906
36 1 4.8054 4.6271 -4.1668
37 1 3.7463 5.7344 -5.0621
38 1 1.8813 5.1902 -3.5611
39 1 3.2850 5.7495 -2.6097
40 1 1.2155 4.2209 -1.3181
41 1 2.6548 3.7506 -0.3663
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309930678.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:37:40
Heat of formation + Delta-G solvation = -18.924023 kcal
Electronic energy + Delta-G solvation = -18089.023905 eV
Core-core repulsion = 15581.552524 eV
Total energy + Delta-G solvation = -2507.471381 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.67667 -36.28230 -33.47218 -31.40733 -31.13968 -29.10929 -26.98018 -25.88879
-23.67056 -22.28585 -20.83349 -20.34688 -19.64281 -18.77485 -15.90266 -15.19106
-14.88616 -14.61262 -14.26706 -14.05791 -13.53069 -13.28388 -12.64346 -12.32858
-12.27811 -12.04125 -11.89198 -11.53556 -11.35769 -11.14715 -10.86821 -10.74548
-10.57526 -10.56087 -10.34549 -10.19373 -10.06229 -9.74305 -9.55545 -9.41422
-9.27153 -8.77117 -8.37564 -7.07179 -5.95768 -3.98584 3.34461 3.38934
3.42017 4.44487 4.72472 4.83210 4.90590 5.10270 5.32633 5.37496
5.45618 5.55630 5.61070 5.68625 5.78451 5.94764 6.04685 6.11926
6.13361 6.21331 6.26016 6.30848 6.39842 6.47833 6.53424 6.57984
6.65537 6.74127 6.82144 6.85302 6.95128 7.19402 7.31849 7.50144
7.69818 7.79637 7.89900 8.20075 8.41718 8.64388 9.07100 9.64861
11.10777
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.033898 B = 0.006976 C = 0.006208
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 825.810899 B = 4012.538323 C = 4508.942960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.110 4.110
3 C 0.212 3.788
4 H -0.005 1.005
5 C -0.494 4.494
6 H 0.060 0.940
7 C 0.059 3.941
8 N -0.894 5.894
9 Si 0.892 3.108
10 H -0.277 1.277
11 H -0.289 1.289
12 H -0.279 1.279
13 N -0.519 5.519
14 C 0.051 3.949
15 C -0.101 4.101
16 H 0.078 0.922
17 C -0.106 4.106
18 C -0.115 4.115
19 C -0.117 4.117
20 C -0.103 4.103
21 C -0.116 4.116
22 H 0.066 0.934
23 C 0.060 3.940
24 H 0.039 0.961
25 H 0.014 0.986
26 H 0.059 0.941
27 H 0.012 0.988
28 H 0.089 0.911
29 H 0.260 0.740
30 H 0.037 0.963
31 H 0.066 0.934
32 H 0.060 0.940
33 H 0.059 0.941
34 H 0.055 0.945
35 H 0.057 0.943
36 H 0.056 0.944
37 H 0.056 0.944
38 H 0.061 0.939
39 H 0.060 0.940
40 H 0.059 0.941
41 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.356 4.651 -12.393 13.306
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.148 4.148
3 C 0.105 3.895
4 H 0.013 0.987
5 C -0.533 4.533
6 H 0.078 0.922
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.721 3.279
10 H -0.203 1.203
11 H -0.215 1.215
12 H -0.204 1.204
13 N -0.243 5.243
14 C -0.077 4.077
15 C -0.120 4.120
16 H 0.096 0.904
17 C -0.144 4.144
18 C -0.153 4.153
19 C -0.154 4.154
20 C -0.141 4.141
21 C -0.135 4.135
22 H 0.085 0.915
23 C -0.068 4.068
24 H 0.058 0.942
25 H 0.033 0.967
26 H 0.078 0.922
27 H 0.030 0.970
28 H 0.107 0.893
29 H 0.070 0.930
30 H 0.055 0.945
31 H 0.084 0.916
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.074 0.926
35 H 0.076 0.924
36 H 0.074 0.926
37 H 0.075 0.925
38 H 0.080 0.920
39 H 0.079 0.921
40 H 0.078 0.922
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 0.884 4.513 -12.199 13.037
hybrid contribution 0.619 0.365 0.914 1.162
sum 1.503 4.879 -11.286 12.386
Atomic orbital electron populations
1.21462 0.97328 0.97443 1.01477 1.21523 0.95230 0.98224 0.99816
1.19436 0.92762 0.91125 0.86178 0.98698 1.21027 1.30890 1.11710
0.89681 0.92190 1.24894 0.95329 0.95108 0.98814 1.69872 1.37563
1.23096 1.22779 0.86652 0.79394 0.79671 0.82234 1.20257 1.21456
1.20437 1.64559 1.56874 1.00702 1.02165 1.22763 0.98128 0.95590
0.91246 1.22156 0.98263 0.96928 0.94683 0.90372 1.21359 0.99367
0.96688 0.96988 1.21510 1.00998 0.94970 0.97775 1.21303 0.99701
0.97840 0.96585 1.21046 0.99921 0.97192 0.95892 1.22239 0.99736
0.95467 0.96081 0.91534 1.22437 0.96641 0.92047 0.95691 0.94177
0.96713 0.92195 0.96977 0.89257 0.93040 0.94502 0.91575 0.92082
0.92179 0.92635 0.92398 0.92560 0.92544 0.91983 0.92136 0.92214
0.91642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.73 9.52 37.16 0.35 -2.37 16
2 C -0.11 -2.67 5.26 -26.73 -0.14 -2.81 16
3 C 0.21 5.32 1.41 -68.86 -0.10 5.23 16
4 H 0.00 -0.13 8.11 -51.93 -0.42 -0.55 16
5 C -0.49 -13.40 6.27 -34.44 -0.22 -13.62 16
6 H 0.06 1.64 7.45 -52.49 -0.39 1.25 16
7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16
8 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16
9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16
10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
13 N -0.52 -11.20 4.44 -224.48 -1.00 -12.19 16
14 C 0.05 0.94 4.96 -2.40 -0.01 0.93 16
15 C -0.10 -1.55 2.51 -89.60 -0.22 -1.77 16
16 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16
17 C -0.11 -1.35 5.71 -26.98 -0.15 -1.50 16
18 C -0.11 -1.27 5.84 -26.56 -0.16 -1.43 16
19 C -0.12 -1.32 5.81 -27.24 -0.16 -1.48 16
20 C -0.10 -1.34 5.58 -27.74 -0.15 -1.50 16
21 C -0.12 -1.85 2.32 -90.09 -0.21 -2.06 16
22 H 0.07 1.13 7.98 -51.93 -0.41 0.72 16
23 C 0.06 1.18 5.82 -2.99 -0.02 1.16 16
24 H 0.04 0.87 7.76 -51.93 -0.40 0.46 16
25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
26 H 0.06 1.48 7.04 -51.93 -0.37 1.11 16
27 H 0.01 0.27 7.05 -51.93 -0.37 -0.10 16
28 H 0.09 2.42 6.09 -51.93 -0.32 2.11 16
29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
30 H 0.04 0.72 7.72 -51.93 -0.40 0.32 16
31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
32 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16
33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16
35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16
39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.06 1.14 8.07 -51.92 -0.42 0.72 16
41 H 0.07 1.43 7.02 -51.93 -0.36 1.07 16
LS Contribution 304.79 15.07 4.59 4.59
Total: -1.00 -27.56 304.79 -9.71 -37.26
By element:
Atomic # 1 Polarization: 6.10 SS G_CDS: -7.63 Total: -1.53 kcal
Atomic # 6 Polarization: -18.42 SS G_CDS: -1.28 Total: -19.70 kcal
Atomic # 7 Polarization: -36.66 SS G_CDS: -0.37 Total: -37.03 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -27.56 -9.71 -37.26 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309930678.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.340 kcal
(2) G-P(sol) polarization free energy of solvation -27.555 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.215 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.924 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds