Wall clock time and date at job start Sun Mar 29 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46927 * 2 1 4 4 H 1.08998 * 109.47124 * 178.85699 * 3 2 1 5 5 C 1.50700 * 109.47205 * 58.85034 * 3 2 1 6 6 H 1.08000 * 119.99447 * 239.99992 * 5 3 2 7 7 C 1.37877 * 120.00065 * 59.72571 * 5 3 2 8 8 N 1.31509 * 119.99839 * 0.27454 * 7 5 3 9 9 Si 1.86792 * 119.99991 * 180.27031 * 7 5 3 10 10 H 1.48506 * 109.47036 * 60.00404 * 9 7 5 11 11 H 1.48501 * 109.47317 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47741 * 300.00510 * 9 7 5 13 13 N 1.46903 * 109.46567 * 298.84985 * 3 2 1 14 14 C 1.49158 * 111.00391 * 300.66413 * 13 3 2 15 15 C 1.53332 * 103.12644 * 212.63283 * 14 13 3 16 16 H 1.09000 * 110.99188 * 285.41760 * 15 14 13 17 17 C 1.51711 * 116.73751 * 157.00381 * 15 14 13 18 18 C 1.53777 * 107.09037 * 184.30216 * 17 15 14 19 19 C 1.52539 * 111.64529 * 57.68356 * 18 17 15 20 20 C 1.52464 * 111.72102 * 306.17674 * 19 18 17 21 21 C 1.51538 * 107.79905 * 56.87843 * 20 19 18 22 22 H 1.09000 * 110.71737 * 55.19538 * 21 20 19 23 23 C 1.48822 * 110.99573 * 180.38994 * 13 3 2 24 24 H 1.08996 * 109.47520 * 63.99782 * 1 2 3 25 25 H 1.08998 * 109.47142 * 184.00005 * 1 2 3 26 26 H 1.09005 * 109.47420 * 303.99677 * 1 2 3 27 27 H 1.08992 * 109.46961 * 239.99733 * 2 1 3 28 28 H 1.09004 * 109.46598 * 119.99491 * 2 1 3 29 29 H 0.97003 * 120.00314 * 179.97438 * 8 7 5 30 30 H 1.08999 * 110.68319 * 331.04000 * 14 13 3 31 31 H 1.08998 * 110.68556 * 94.22285 * 14 13 3 32 32 H 1.09001 * 109.93290 * 303.69722 * 17 15 14 33 33 H 1.09003 * 109.93089 * 64.82718 * 17 15 14 34 34 H 1.09008 * 109.04887 * 178.23730 * 18 17 15 35 35 H 1.09001 * 109.05118 * 297.19573 * 18 17 15 36 36 H 1.08998 * 109.05449 * 66.43847 * 19 18 17 37 37 H 1.09004 * 109.05504 * 185.35107 * 19 18 17 38 38 H 1.08997 * 109.16517 * 297.51153 * 20 19 18 39 39 H 1.08999 * 110.01351 * 176.73661 * 20 19 18 40 40 H 1.09009 * 110.21042 * 237.89096 * 23 13 3 41 41 H 1.09004 * 110.21327 * 359.79310 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 0.0205 5 6 1.5145 2.1611 1.2160 6 1 0.8956 3.0385 1.0992 7 6 1.8191 1.6952 2.4774 8 7 2.5728 0.6269 2.6194 9 14 1.1616 2.5815 3.9844 10 1 -0.3231 2.5807 3.9506 11 1 1.6285 1.8862 5.2107 12 1 1.6557 3.9819 3.9902 13 7 1.5730 2.1268 -1.2132 14 6 2.0614 1.4330 -2.4399 15 6 2.2510 2.5818 -3.4376 16 1 1.2905 2.9386 -3.8093 17 6 3.2182 2.3400 -4.5812 18 6 3.3210 3.6550 -5.3717 19 6 3.7794 4.8094 -4.4863 20 6 2.8994 4.9562 -3.2500 21 6 2.9214 3.6359 -2.5064 22 1 3.9451 3.3377 -2.2803 23 6 2.0586 3.5331 -1.2525 24 1 -0.3634 0.4505 -0.9236 25 1 -0.3633 -1.0251 0.0717 26 1 -0.3634 0.5746 0.8520 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.7874 0.2993 3.5069 30 1 3.0092 0.9306 -2.2465 31 1 1.3167 0.7254 -2.8043 32 1 4.1970 2.0652 -4.1882 33 1 2.8405 1.5462 -5.2257 34 1 4.0346 3.5259 -6.1856 35 1 2.3439 3.8956 -5.7906 36 1 4.8054 4.6271 -4.1668 37 1 3.7463 5.7344 -5.0621 38 1 1.8813 5.1902 -3.5611 39 1 3.2850 5.7495 -2.6097 40 1 1.2155 4.2209 -1.3181 41 1 2.6548 3.7506 -0.3663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309930678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:40 Heat of formation + Delta-G solvation = -18.924023 kcal Electronic energy + Delta-G solvation = -18089.023905 eV Core-core repulsion = 15581.552524 eV Total energy + Delta-G solvation = -2507.471381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67667 -36.28230 -33.47218 -31.40733 -31.13968 -29.10929 -26.98018 -25.88879 -23.67056 -22.28585 -20.83349 -20.34688 -19.64281 -18.77485 -15.90266 -15.19106 -14.88616 -14.61262 -14.26706 -14.05791 -13.53069 -13.28388 -12.64346 -12.32858 -12.27811 -12.04125 -11.89198 -11.53556 -11.35769 -11.14715 -10.86821 -10.74548 -10.57526 -10.56087 -10.34549 -10.19373 -10.06229 -9.74305 -9.55545 -9.41422 -9.27153 -8.77117 -8.37564 -7.07179 -5.95768 -3.98584 3.34461 3.38934 3.42017 4.44487 4.72472 4.83210 4.90590 5.10270 5.32633 5.37496 5.45618 5.55630 5.61070 5.68625 5.78451 5.94764 6.04685 6.11926 6.13361 6.21331 6.26016 6.30848 6.39842 6.47833 6.53424 6.57984 6.65537 6.74127 6.82144 6.85302 6.95128 7.19402 7.31849 7.50144 7.69818 7.79637 7.89900 8.20075 8.41718 8.64388 9.07100 9.64861 11.10777 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.006976 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.810899 B = 4012.538323 C = 4508.942960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.212 3.788 4 H -0.005 1.005 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.519 5.519 14 C 0.051 3.949 15 C -0.101 4.101 16 H 0.078 0.922 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.116 4.116 22 H 0.066 0.934 23 C 0.060 3.940 24 H 0.039 0.961 25 H 0.014 0.986 26 H 0.059 0.941 27 H 0.012 0.988 28 H 0.089 0.911 29 H 0.260 0.740 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 4.651 -12.393 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.105 3.895 4 H 0.013 0.987 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.243 5.243 14 C -0.077 4.077 15 C -0.120 4.120 16 H 0.096 0.904 17 C -0.144 4.144 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.141 4.141 21 C -0.135 4.135 22 H 0.085 0.915 23 C -0.068 4.068 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.884 4.513 -12.199 13.037 hybrid contribution 0.619 0.365 0.914 1.162 sum 1.503 4.879 -11.286 12.386 Atomic orbital electron populations 1.21462 0.97328 0.97443 1.01477 1.21523 0.95230 0.98224 0.99816 1.19436 0.92762 0.91125 0.86178 0.98698 1.21027 1.30890 1.11710 0.89681 0.92190 1.24894 0.95329 0.95108 0.98814 1.69872 1.37563 1.23096 1.22779 0.86652 0.79394 0.79671 0.82234 1.20257 1.21456 1.20437 1.64559 1.56874 1.00702 1.02165 1.22763 0.98128 0.95590 0.91246 1.22156 0.98263 0.96928 0.94683 0.90372 1.21359 0.99367 0.96688 0.96988 1.21510 1.00998 0.94970 0.97775 1.21303 0.99701 0.97840 0.96585 1.21046 0.99921 0.97192 0.95892 1.22239 0.99736 0.95467 0.96081 0.91534 1.22437 0.96641 0.92047 0.95691 0.94177 0.96713 0.92195 0.96977 0.89257 0.93040 0.94502 0.91575 0.92082 0.92179 0.92635 0.92398 0.92560 0.92544 0.91983 0.92136 0.92214 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.52 37.16 0.35 -2.37 16 2 C -0.11 -2.67 5.26 -26.73 -0.14 -2.81 16 3 C 0.21 5.32 1.41 -68.86 -0.10 5.23 16 4 H 0.00 -0.13 8.11 -51.93 -0.42 -0.55 16 5 C -0.49 -13.40 6.27 -34.44 -0.22 -13.62 16 6 H 0.06 1.64 7.45 -52.49 -0.39 1.25 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.52 -11.20 4.44 -224.48 -1.00 -12.19 16 14 C 0.05 0.94 4.96 -2.40 -0.01 0.93 16 15 C -0.10 -1.55 2.51 -89.60 -0.22 -1.77 16 16 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 17 C -0.11 -1.35 5.71 -26.98 -0.15 -1.50 16 18 C -0.11 -1.27 5.84 -26.56 -0.16 -1.43 16 19 C -0.12 -1.32 5.81 -27.24 -0.16 -1.48 16 20 C -0.10 -1.34 5.58 -27.74 -0.15 -1.50 16 21 C -0.12 -1.85 2.32 -90.09 -0.21 -2.06 16 22 H 0.07 1.13 7.98 -51.93 -0.41 0.72 16 23 C 0.06 1.18 5.82 -2.99 -0.02 1.16 16 24 H 0.04 0.87 7.76 -51.93 -0.40 0.46 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 1.48 7.04 -51.93 -0.37 1.11 16 27 H 0.01 0.27 7.05 -51.93 -0.37 -0.10 16 28 H 0.09 2.42 6.09 -51.93 -0.32 2.11 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.72 7.72 -51.93 -0.40 0.32 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.14 8.07 -51.92 -0.42 0.72 16 41 H 0.07 1.43 7.02 -51.93 -0.36 1.07 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -27.56 304.79 -9.71 -37.26 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.63 Total: -1.53 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.28 Total: -19.70 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.37 Total: -37.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.56 -9.71 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309930678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.340 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds