Wall clock time and date at job start Sun Mar 29 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46927 * 2 1 4 4 H 1.08998 * 109.47124 * 178.85699 * 3 2 1 5 5 C 1.50700 * 109.47205 * 58.85034 * 3 2 1 6 6 H 1.08000 * 119.99447 * 239.99992 * 5 3 2 7 7 C 1.37877 * 120.00065 * 59.72571 * 5 3 2 8 8 N 1.31509 * 119.99839 * 0.27454 * 7 5 3 9 9 Si 1.86792 * 119.99991 * 180.27031 * 7 5 3 10 10 H 1.48506 * 109.47036 * 60.00404 * 9 7 5 11 11 H 1.48501 * 109.47317 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47741 * 300.00510 * 9 7 5 13 13 N 1.46903 * 109.46567 * 298.84985 * 3 2 1 14 14 C 1.49158 * 111.00391 * 300.66413 * 13 3 2 15 15 C 1.53332 * 103.12644 * 212.63283 * 14 13 3 16 16 H 1.09000 * 110.99188 * 285.41760 * 15 14 13 17 17 C 1.51711 * 116.73751 * 157.00381 * 15 14 13 18 18 C 1.53777 * 107.09037 * 184.30216 * 17 15 14 19 19 C 1.52539 * 111.64529 * 57.68356 * 18 17 15 20 20 C 1.52464 * 111.72102 * 306.17674 * 19 18 17 21 21 C 1.51538 * 107.79905 * 56.87843 * 20 19 18 22 22 H 1.09000 * 110.71737 * 55.19538 * 21 20 19 23 23 C 1.48822 * 110.99573 * 180.38994 * 13 3 2 24 24 H 1.08996 * 109.47520 * 63.99782 * 1 2 3 25 25 H 1.08998 * 109.47142 * 184.00005 * 1 2 3 26 26 H 1.09005 * 109.47420 * 303.99677 * 1 2 3 27 27 H 1.08992 * 109.46961 * 239.99733 * 2 1 3 28 28 H 1.09004 * 109.46598 * 119.99491 * 2 1 3 29 29 H 0.97003 * 120.00314 * 179.97438 * 8 7 5 30 30 H 1.08999 * 110.68319 * 331.04000 * 14 13 3 31 31 H 1.08998 * 110.68556 * 94.22285 * 14 13 3 32 32 H 1.09001 * 109.93290 * 303.69722 * 17 15 14 33 33 H 1.09003 * 109.93089 * 64.82718 * 17 15 14 34 34 H 1.09008 * 109.04887 * 178.23730 * 18 17 15 35 35 H 1.09001 * 109.05118 * 297.19573 * 18 17 15 36 36 H 1.08998 * 109.05449 * 66.43847 * 19 18 17 37 37 H 1.09004 * 109.05504 * 185.35107 * 19 18 17 38 38 H 1.08997 * 109.16517 * 297.51153 * 20 19 18 39 39 H 1.08999 * 110.01351 * 176.73661 * 20 19 18 40 40 H 1.09009 * 110.21042 * 237.89096 * 23 13 3 41 41 H 1.09004 * 110.21327 * 359.79310 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 0.0205 5 6 1.5145 2.1611 1.2160 6 1 0.8956 3.0385 1.0992 7 6 1.8191 1.6952 2.4774 8 7 2.5728 0.6269 2.6194 9 14 1.1616 2.5815 3.9844 10 1 -0.3231 2.5807 3.9506 11 1 1.6285 1.8862 5.2107 12 1 1.6557 3.9819 3.9902 13 7 1.5730 2.1268 -1.2132 14 6 2.0614 1.4330 -2.4399 15 6 2.2510 2.5818 -3.4376 16 1 1.2905 2.9386 -3.8093 17 6 3.2182 2.3400 -4.5812 18 6 3.3210 3.6550 -5.3717 19 6 3.7794 4.8094 -4.4863 20 6 2.8994 4.9562 -3.2500 21 6 2.9214 3.6359 -2.5064 22 1 3.9451 3.3377 -2.2803 23 6 2.0586 3.5331 -1.2525 24 1 -0.3634 0.4505 -0.9236 25 1 -0.3633 -1.0251 0.0717 26 1 -0.3634 0.5746 0.8520 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.7874 0.2993 3.5069 30 1 3.0092 0.9306 -2.2465 31 1 1.3167 0.7254 -2.8043 32 1 4.1970 2.0652 -4.1882 33 1 2.8405 1.5462 -5.2257 34 1 4.0346 3.5259 -6.1856 35 1 2.3439 3.8956 -5.7906 36 1 4.8054 4.6271 -4.1668 37 1 3.7463 5.7344 -5.0621 38 1 1.8813 5.1902 -3.5611 39 1 3.2850 5.7495 -2.6097 40 1 1.2155 4.2209 -1.3181 41 1 2.6548 3.7506 -0.3663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309930678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:40 Heat of formation + Delta-G solvation = -33.663542 kcal Electronic energy + Delta-G solvation = -18089.663059 eV Core-core repulsion = 15581.552524 eV Total energy + Delta-G solvation = -2508.110535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.03913 -37.85480 -35.18296 -33.21424 -32.45536 -30.63487 -28.53420 -27.63450 -25.50525 -23.75437 -22.02386 -21.76161 -20.89295 -20.60704 -17.98089 -16.99240 -16.36288 -15.98462 -15.64349 -15.28874 -15.10562 -14.88104 -14.22195 -13.96981 -13.73018 -13.57573 -13.42264 -12.91135 -12.80344 -12.74582 -12.62141 -12.42692 -12.25861 -11.93299 -11.83936 -11.67446 -11.50361 -11.33653 -11.19311 -11.02934 -10.79879 -10.60959 -10.48655 -8.87498 -8.08233 -6.17917 1.40913 1.42393 1.49742 2.42725 3.19367 3.41750 3.52550 3.79827 3.90318 4.21952 4.30763 4.43373 4.50421 4.59632 4.61669 4.66035 4.69570 4.73164 4.76967 4.84821 4.90611 4.99950 5.06212 5.11486 5.16670 5.25354 5.29269 5.31388 5.37000 5.41549 5.44782 5.47800 5.52528 5.65867 5.74320 5.75541 5.86889 6.29167 6.41834 6.71623 6.94781 7.49457 8.97330 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.006976 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.810899 B = 4012.538323 C = 4508.942960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.221 3.779 4 H -0.049 1.049 5 C -0.504 4.504 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.527 5.527 14 C 0.048 3.952 15 C -0.088 4.088 16 H 0.086 0.914 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.098 4.098 21 C -0.109 4.109 22 H 0.050 0.950 23 C 0.059 3.941 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.025 0.975 28 H 0.060 0.940 29 H 0.260 0.740 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 5.612 -14.264 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C 0.113 3.887 4 H -0.031 1.031 5 C -0.542 4.542 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.251 5.251 14 C -0.080 4.080 15 C -0.107 4.107 16 H 0.104 0.896 17 C -0.141 4.141 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.136 4.136 21 C -0.128 4.128 22 H 0.068 0.932 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.163 5.483 -14.087 15.118 hybrid contribution 0.858 0.053 1.488 1.719 sum 1.021 5.536 -12.599 13.800 Atomic orbital electron populations 1.21310 0.95694 0.98515 1.00876 1.21400 0.96544 0.97455 0.98988 1.19181 0.90004 0.91988 0.87493 1.03124 1.21213 1.30650 1.11547 0.90801 0.92973 1.25622 0.95563 0.95788 1.01509 1.70010 1.38524 1.24271 1.23261 0.85703 0.78937 0.78676 0.78899 1.19649 1.21037 1.19905 1.64494 1.57012 1.01602 1.01975 1.22828 0.97406 0.96779 0.90960 1.22097 0.99273 0.94659 0.94688 0.89602 1.21364 0.98043 0.98515 0.96218 1.21500 1.02180 0.93416 0.97786 1.21302 0.98890 0.99176 0.95855 1.21040 1.01018 0.95138 0.96446 1.22131 0.97953 0.97975 0.94749 0.93166 1.22409 0.97053 0.91103 0.96356 0.93100 0.94501 0.94552 0.95618 0.92187 0.93101 0.96060 0.90856 0.92940 0.90735 0.90703 0.91399 0.92946 0.90327 0.91193 0.91966 0.91578 0.94970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.52 71.98 0.69 -4.12 16 2 C -0.11 -5.25 5.26 30.60 0.16 -5.09 16 3 C 0.22 11.53 1.41 44.17 0.06 11.60 16 4 H -0.05 -2.90 8.11 -2.39 -0.02 -2.92 16 5 C -0.50 -28.12 6.27 25.60 0.16 -27.96 16 6 H 0.05 2.93 7.45 -2.91 -0.02 2.91 16 7 C 0.01 0.76 5.30 84.66 0.45 1.21 16 8 N -0.92 -54.00 11.32 21.45 0.24 -53.76 16 9 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.53 -23.11 4.44 -864.12 -3.84 -26.95 16 14 C 0.05 1.76 4.96 85.98 0.43 2.19 16 15 C -0.09 -2.56 2.51 -10.13 -0.03 -2.58 16 16 H 0.09 2.41 8.06 -2.39 -0.02 2.39 16 17 C -0.10 -2.37 5.71 30.43 0.17 -2.20 16 18 C -0.11 -2.05 5.84 30.70 0.18 -1.87 16 19 C -0.11 -2.24 5.81 30.26 0.18 -2.06 16 20 C -0.10 -2.38 5.58 29.94 0.17 -2.21 16 21 C -0.11 -3.42 2.32 -10.45 -0.02 -3.45 16 22 H 0.05 1.74 7.98 -2.39 -0.02 1.72 16 23 C 0.06 2.35 5.82 85.78 0.50 2.85 16 24 H 0.05 2.15 7.76 -2.39 -0.02 2.13 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.78 7.04 -2.38 -0.02 1.77 16 27 H 0.03 1.17 7.05 -2.39 -0.02 1.15 16 28 H 0.06 3.35 6.09 -2.38 -0.01 3.34 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.02 0.84 7.72 -2.39 -0.02 0.82 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.05 1.30 8.00 -2.39 -0.02 1.28 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.07 1.60 8.06 -2.39 -0.02 1.58 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 2.53 8.07 -2.38 -0.02 2.51 16 41 H 0.03 1.48 7.02 -2.39 -0.02 1.46 16 Total: -1.00 -60.71 304.79 2.48 -58.23 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.96 Total: 9.62 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 3.09 Total: -33.70 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -3.60 Total: -80.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -60.71 2.48 -58.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309930678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.567 kcal (2) G-P(sol) polarization free energy of solvation -60.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds