Wall clock time and date at job start Sun Mar 29 2020 22:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46911 * 2 1 4 4 H 1.08998 * 109.47420 * 57.86762 * 3 2 1 5 5 C 1.50702 * 109.47094 * 177.87185 * 3 2 1 6 6 H 1.07999 * 120.00161 * 124.87095 * 5 3 2 7 7 C 1.37880 * 119.99732 * 304.86690 * 5 3 2 8 8 N 1.31510 * 119.99827 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99694 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47350 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46881 * 120.00439 * 9 7 5 12 12 H 1.48503 * 109.47169 * 240.00118 * 9 7 5 13 13 N 1.46905 * 109.47466 * 297.87005 * 3 2 1 14 14 C 1.47348 * 110.99547 * 310.14947 * 13 3 2 15 15 C 1.54688 * 107.38458 * 238.32349 * 14 13 3 16 16 H 1.09004 * 109.92553 * 222.59056 * 15 14 13 17 17 C 1.51763 * 108.31010 * 101.98298 * 15 14 13 18 18 C 1.52268 * 112.27161 * 200.21720 * 17 15 14 19 19 C 1.53203 * 108.68919 * 59.28418 * 18 17 15 20 20 C 1.50754 * 108.42403 * 295.45870 * 19 18 17 21 21 C 1.50381 * 113.62769 * 56.75345 * 20 19 18 22 22 H 1.08999 * 108.26386 * 195.56232 * 21 20 19 23 23 C 1.47593 * 111.00318 * 188.69940 * 13 3 2 24 24 H 1.08998 * 109.47446 * 295.09681 * 1 2 3 25 25 H 1.09000 * 109.47017 * 55.09615 * 1 2 3 26 26 H 1.09003 * 109.47050 * 175.09684 * 1 2 3 27 27 H 1.08996 * 109.47324 * 239.99904 * 2 1 3 28 28 H 1.08996 * 109.46881 * 119.99845 * 2 1 3 29 29 H 0.97007 * 119.99628 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.88791 * 357.81403 * 14 13 3 31 31 H 1.09000 * 109.88401 * 118.83319 * 14 13 3 32 32 H 1.09001 * 108.91589 * 320.93791 * 17 15 14 33 33 H 1.08995 * 108.92054 * 79.59069 * 17 15 14 34 34 H 1.08998 * 109.59735 * 179.03833 * 18 17 15 35 35 H 1.09000 * 109.60466 * 299.51873 * 18 17 15 36 36 H 1.08998 * 109.64580 * 54.78194 * 19 18 17 37 37 H 1.08996 * 109.64238 * 175.20206 * 19 18 17 38 38 H 1.08998 * 108.38944 * 295.61198 * 20 19 18 39 39 H 1.09000 * 108.27815 * 177.81147 * 20 19 18 40 40 H 1.08999 * 110.23352 * 259.93809 * 23 13 3 41 41 H 1.09001 * 110.22779 * 21.89346 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6457 1.9673 0.8702 5 6 3.5460 1.4429 0.0528 6 1 4.1127 1.9682 -0.7018 7 6 4.2005 0.7726 1.0644 8 7 3.5105 0.1325 1.9829 9 14 6.0674 0.7736 1.1302 10 1 6.6025 1.5608 -0.0097 11 1 6.5173 1.3838 2.4071 12 1 6.5665 -0.6225 1.0459 13 7 1.5928 2.1200 -1.2244 14 6 1.8994 1.3114 -2.4173 15 6 2.7989 2.1690 -3.3383 16 1 2.4784 2.0622 -4.3747 17 6 4.2324 1.6970 -3.1785 18 6 5.2391 2.7457 -3.6317 19 6 5.0348 4.0148 -2.7983 20 6 3.6675 4.5710 -3.1047 21 6 2.5506 3.5946 -2.8587 22 1 1.6555 3.9668 -3.3570 23 6 2.2335 3.4425 -1.3613 24 1 -0.3634 0.4359 0.9306 25 1 -0.3633 0.5880 -0.8428 26 1 -0.3633 -1.0239 -0.0878 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9710 -0.3394 2.6945 30 1 2.4271 0.4037 -2.1244 31 1 0.9768 1.0524 -2.9368 32 1 4.4128 1.4640 -2.1291 33 1 4.3749 0.7930 -3.7705 34 1 6.2512 2.3694 -3.4826 35 1 5.0822 2.9715 -4.6865 36 1 5.0960 3.7707 -1.7378 37 1 5.8023 4.7464 -3.0507 38 1 3.6463 4.8741 -4.1515 39 1 3.5092 5.4515 -2.4819 40 1 1.5498 4.2279 -1.0392 41 1 3.1524 3.4785 -0.7760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309930679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:42 Heat of formation + Delta-G solvation = -12.743447 kcal Electronic energy + Delta-G solvation = -18820.243874 eV Core-core repulsion = 16313.040502 eV Total energy + Delta-G solvation = -2507.203371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77831 -36.02814 -33.19758 -31.52341 -31.29770 -29.39842 -26.61414 -26.21206 -23.37415 -22.17939 -21.34141 -20.89480 -18.63392 -17.98639 -16.47788 -15.43581 -15.02319 -14.29666 -13.98006 -13.89719 -13.60921 -12.98363 -12.60345 -12.44067 -12.23282 -11.72033 -11.57058 -11.34700 -11.27835 -11.17660 -11.02840 -10.78957 -10.64706 -10.40898 -9.97578 -9.91951 -9.77977 -9.57881 -9.55815 -9.36500 -9.22497 -8.75691 -8.32717 -7.01642 -5.94514 -4.09294 3.24715 3.34185 3.36210 4.39155 5.05675 5.08042 5.11601 5.26451 5.45037 5.59755 5.64199 5.73221 5.87956 6.00873 6.03230 6.12835 6.26301 6.35207 6.36035 6.42421 6.45629 6.50852 6.59363 6.62328 6.72536 6.74194 6.80331 6.84041 6.95424 7.02636 7.09508 7.22737 7.26453 7.36096 7.74122 7.82025 8.11029 8.23964 8.42933 8.52760 9.03120 9.57603 11.01524 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.012977 C = 0.009007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.751596 B = 2157.167291 C = 3107.981762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.207 3.793 4 H 0.034 0.966 5 C -0.543 4.543 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.879 3.121 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.529 5.529 14 C 0.052 3.948 15 C -0.091 4.091 16 H 0.057 0.943 17 C -0.134 4.134 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.088 4.088 22 H 0.057 0.943 23 C 0.048 3.952 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.024 0.976 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 4.369 -8.775 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.100 3.900 4 H 0.052 0.948 5 C -0.582 4.582 6 H 0.093 0.907 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.707 3.293 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.252 5.252 14 C -0.077 4.077 15 C -0.111 4.111 16 H 0.076 0.924 17 C -0.171 4.171 18 C -0.150 4.150 19 C -0.158 4.158 20 C -0.137 4.137 21 C -0.107 4.107 22 H 0.076 0.924 23 C -0.080 4.080 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.259 4.313 -8.548 9.578 hybrid contribution 1.894 -0.203 0.038 1.905 sum 1.635 4.110 -8.510 9.591 Atomic orbital electron populations 1.21745 0.99115 0.98369 1.00535 1.21833 0.92013 0.99396 1.02811 1.19418 0.92619 0.90837 0.87127 0.94799 1.22106 0.92756 1.32397 1.10911 0.90709 1.24920 0.97655 0.95242 0.95635 1.69833 1.34629 1.33786 1.14089 0.86743 0.86689 0.77826 0.78072 1.19601 1.21094 1.21083 1.63664 1.55971 1.02326 1.03278 1.22924 0.96429 0.97419 0.90905 1.21488 0.95987 0.94949 0.98644 0.92449 1.21563 0.93547 0.97087 1.04899 1.21367 0.98763 0.96180 0.98723 1.21174 0.96378 0.97006 1.01276 1.20398 0.94677 0.98192 1.00394 1.20955 0.97275 0.94712 0.97757 0.92409 1.22821 0.98751 0.92306 0.94151 0.94361 0.93330 0.95705 0.94660 0.87985 0.93062 0.91089 0.93345 0.88216 0.93256 0.92779 0.93053 0.91188 0.92741 0.93213 0.92508 0.92846 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.82 37.16 0.37 -2.54 16 2 C -0.12 -2.89 4.78 -26.73 -0.13 -3.02 16 3 C 0.21 5.02 2.07 -68.86 -0.14 4.88 16 4 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.54 -13.79 6.15 -34.44 -0.21 -14.00 16 6 H 0.08 1.85 3.27 -52.49 -0.17 1.68 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.38 10.96 55.43 0.61 -23.78 16 9 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.53 -11.23 4.52 -225.44 -1.02 -12.24 16 14 C 0.05 1.00 5.09 -2.69 -0.01 0.99 16 15 C -0.09 -1.57 3.13 -90.64 -0.28 -1.85 16 16 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.13 -2.34 4.91 -27.73 -0.14 -2.48 16 18 C -0.11 -1.74 5.94 -27.00 -0.16 -1.90 16 19 C -0.12 -1.86 5.87 -27.75 -0.16 -2.02 16 20 C -0.10 -1.45 5.11 -29.16 -0.15 -1.60 16 21 C -0.09 -1.46 2.71 -91.78 -0.25 -1.71 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 23 C 0.05 0.94 5.74 -3.02 -0.02 0.92 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.98 7.37 -51.93 -0.38 0.59 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.82 5.84 -51.93 -0.30 0.52 16 28 H 0.10 2.70 5.63 -51.93 -0.29 2.41 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.07 1.52 4.73 -51.93 -0.25 1.27 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 2.08 4.20 -51.93 -0.22 1.87 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.25 7.02 -51.93 -0.36 0.89 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.54 4.74 -51.93 -0.25 1.30 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -25.90 289.83 -9.30 -35.20 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.85 Total: 3.53 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.38 Total: -22.65 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.41 Total: -36.02 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -25.90 -9.30 -35.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309930679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.460 kcal (2) G-P(sol) polarization free energy of solvation -25.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds