Wall clock time and date at job start Sun Mar 29 2020 22:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46911 * 2 1 4 4 H 1.08998 * 109.47420 * 57.86762 * 3 2 1 5 5 C 1.50702 * 109.47094 * 177.87185 * 3 2 1 6 6 H 1.07999 * 120.00161 * 124.87095 * 5 3 2 7 7 C 1.37880 * 119.99732 * 304.86690 * 5 3 2 8 8 N 1.31510 * 119.99827 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99694 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47350 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46881 * 120.00439 * 9 7 5 12 12 H 1.48503 * 109.47169 * 240.00118 * 9 7 5 13 13 N 1.46905 * 109.47466 * 297.87005 * 3 2 1 14 14 C 1.47348 * 110.99547 * 310.14947 * 13 3 2 15 15 C 1.54688 * 107.38458 * 238.32349 * 14 13 3 16 16 H 1.09004 * 109.92553 * 222.59056 * 15 14 13 17 17 C 1.51763 * 108.31010 * 101.98298 * 15 14 13 18 18 C 1.52268 * 112.27161 * 200.21720 * 17 15 14 19 19 C 1.53203 * 108.68919 * 59.28418 * 18 17 15 20 20 C 1.50754 * 108.42403 * 295.45870 * 19 18 17 21 21 C 1.50381 * 113.62769 * 56.75345 * 20 19 18 22 22 H 1.08999 * 108.26386 * 195.56232 * 21 20 19 23 23 C 1.47593 * 111.00318 * 188.69940 * 13 3 2 24 24 H 1.08998 * 109.47446 * 295.09681 * 1 2 3 25 25 H 1.09000 * 109.47017 * 55.09615 * 1 2 3 26 26 H 1.09003 * 109.47050 * 175.09684 * 1 2 3 27 27 H 1.08996 * 109.47324 * 239.99904 * 2 1 3 28 28 H 1.08996 * 109.46881 * 119.99845 * 2 1 3 29 29 H 0.97007 * 119.99628 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.88791 * 357.81403 * 14 13 3 31 31 H 1.09000 * 109.88401 * 118.83319 * 14 13 3 32 32 H 1.09001 * 108.91589 * 320.93791 * 17 15 14 33 33 H 1.08995 * 108.92054 * 79.59069 * 17 15 14 34 34 H 1.08998 * 109.59735 * 179.03833 * 18 17 15 35 35 H 1.09000 * 109.60466 * 299.51873 * 18 17 15 36 36 H 1.08998 * 109.64580 * 54.78194 * 19 18 17 37 37 H 1.08996 * 109.64238 * 175.20206 * 19 18 17 38 38 H 1.08998 * 108.38944 * 295.61198 * 20 19 18 39 39 H 1.09000 * 108.27815 * 177.81147 * 20 19 18 40 40 H 1.08999 * 110.23352 * 259.93809 * 23 13 3 41 41 H 1.09001 * 110.22779 * 21.89346 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6457 1.9673 0.8702 5 6 3.5460 1.4429 0.0528 6 1 4.1127 1.9682 -0.7018 7 6 4.2005 0.7726 1.0644 8 7 3.5105 0.1325 1.9829 9 14 6.0674 0.7736 1.1302 10 1 6.6025 1.5608 -0.0097 11 1 6.5173 1.3838 2.4071 12 1 6.5665 -0.6225 1.0459 13 7 1.5928 2.1200 -1.2244 14 6 1.8994 1.3114 -2.4173 15 6 2.7989 2.1690 -3.3383 16 1 2.4784 2.0622 -4.3747 17 6 4.2324 1.6970 -3.1785 18 6 5.2391 2.7457 -3.6317 19 6 5.0348 4.0148 -2.7983 20 6 3.6675 4.5710 -3.1047 21 6 2.5506 3.5946 -2.8587 22 1 1.6555 3.9668 -3.3570 23 6 2.2335 3.4425 -1.3613 24 1 -0.3634 0.4359 0.9306 25 1 -0.3633 0.5880 -0.8428 26 1 -0.3633 -1.0239 -0.0878 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9710 -0.3394 2.6945 30 1 2.4271 0.4037 -2.1244 31 1 0.9768 1.0524 -2.9368 32 1 4.4128 1.4640 -2.1291 33 1 4.3749 0.7930 -3.7705 34 1 6.2512 2.3694 -3.4826 35 1 5.0822 2.9715 -4.6865 36 1 5.0960 3.7707 -1.7378 37 1 5.8023 4.7464 -3.0507 38 1 3.6463 4.8741 -4.1515 39 1 3.5092 5.4515 -2.4819 40 1 1.5498 4.2279 -1.0392 41 1 3.1524 3.4785 -0.7760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309930679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:42 Heat of formation + Delta-G solvation = -26.317766 kcal Electronic energy + Delta-G solvation = -18820.832500 eV Core-core repulsion = 16313.040502 eV Total energy + Delta-G solvation = -2507.791998 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25726 -37.63128 -34.92858 -33.31806 -32.69450 -30.97727 -28.33901 -27.82160 -25.15791 -23.64506 -22.74151 -22.46713 -20.43216 -19.39953 -18.32500 -17.06969 -16.65825 -16.03158 -15.49012 -15.18978 -15.07049 -14.77497 -14.21632 -14.01177 -13.82311 -13.29802 -13.16807 -12.97387 -12.94441 -12.71003 -12.61134 -12.41083 -12.20888 -12.02899 -11.75714 -11.58421 -11.26602 -11.24345 -11.17596 -10.80511 -10.71480 -10.51333 -10.35870 -8.80207 -7.94647 -6.16671 1.34707 1.39171 1.47490 2.41848 3.20603 3.58979 3.75771 3.79369 4.05415 4.26786 4.33840 4.40999 4.56095 4.61977 4.69306 4.73409 4.80137 4.81751 4.92810 4.95410 5.03045 5.08678 5.15200 5.17427 5.20822 5.23347 5.32105 5.43141 5.46420 5.49728 5.53197 5.55824 5.60391 5.72909 5.85406 5.86472 6.17666 6.31334 6.54831 6.71987 7.06310 7.52867 8.97637 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.012977 C = 0.009007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.751596 B = 2157.167291 C = 3107.981762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.117 4.117 3 C 0.214 3.786 4 H -0.007 1.007 5 C -0.539 4.539 6 H 0.082 0.918 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.933 3.067 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.532 5.532 14 C 0.051 3.949 15 C -0.086 4.086 16 H 0.084 0.916 17 C -0.133 4.133 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.097 4.097 21 C -0.080 4.080 22 H 0.073 0.927 23 C 0.045 3.955 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.257 0.743 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 5.388 -11.390 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.106 3.894 4 H 0.011 0.989 5 C -0.578 4.578 6 H 0.099 0.901 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.760 3.240 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.255 5.255 14 C -0.077 4.077 15 C -0.105 4.105 16 H 0.103 0.897 17 C -0.170 4.170 18 C -0.147 4.147 19 C -0.158 4.158 20 C -0.134 4.134 21 C -0.099 4.099 22 H 0.091 0.909 23 C -0.083 4.083 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.050 5.342 -11.178 12.389 hybrid contribution 1.757 -0.508 0.848 2.016 sum 1.807 4.833 -10.330 11.547 Atomic orbital electron populations 1.21609 0.96727 0.99775 1.00463 1.21668 0.94114 0.98543 1.01210 1.19166 0.91996 0.90971 0.87261 0.98905 1.22423 0.93604 1.31257 1.10538 0.90080 1.25586 1.01240 0.95477 0.95724 1.69981 1.35864 1.34906 1.14753 0.85873 0.82523 0.77620 0.77949 1.18782 1.21315 1.21119 1.63594 1.56069 1.03031 1.02830 1.22943 0.97372 0.96695 0.90710 1.21485 0.95102 0.94545 0.99385 0.89729 1.21496 0.94598 0.98417 1.02520 1.21361 0.97993 0.95291 1.00055 1.21180 0.97742 0.97757 0.99165 1.20388 0.93252 0.97583 1.02218 1.20943 0.98894 0.95046 0.95002 0.90864 1.22847 0.97456 0.91513 0.96527 0.95032 0.92560 0.93654 0.94772 0.90957 0.93357 0.93455 0.92015 0.92164 0.92519 0.92772 0.90445 0.94655 0.90427 0.90403 0.91948 0.92489 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 9.82 71.98 0.71 -4.58 16 2 C -0.12 -5.67 4.78 30.59 0.15 -5.53 16 3 C 0.21 10.71 2.07 44.17 0.09 10.80 16 4 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 5 C -0.54 -28.21 6.15 25.60 0.16 -28.05 16 6 H 0.08 4.12 3.27 -2.91 -0.01 4.11 16 7 C 0.02 1.00 5.29 84.66 0.45 1.45 16 8 N -0.91 -52.34 10.96 21.45 0.23 -52.10 16 9 Si 0.93 43.29 29.54 68.60 2.03 45.31 16 10 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 N -0.53 -22.55 4.52 -867.16 -3.92 -26.47 16 14 C 0.05 1.92 5.09 86.79 0.44 2.36 16 15 C -0.09 -2.72 3.13 -10.81 -0.03 -2.75 16 16 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 17 C -0.13 -4.41 4.91 29.95 0.15 -4.26 16 18 C -0.11 -3.04 5.94 30.42 0.18 -2.86 16 19 C -0.12 -3.41 5.87 29.93 0.18 -3.24 16 20 C -0.10 -2.51 5.11 29.02 0.15 -2.36 16 21 C -0.08 -2.43 2.71 -11.55 -0.03 -2.47 16 22 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 23 C 0.04 1.73 5.74 86.45 0.50 2.22 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 2.21 7.37 -2.39 -0.02 2.19 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.03 1.63 5.84 -2.39 -0.01 1.61 16 28 H 0.07 3.98 5.63 -2.39 -0.01 3.96 16 29 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.05 2.02 4.73 -2.39 -0.01 2.01 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.50 4.20 -2.39 -0.01 2.49 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.03 1.23 7.02 -2.39 -0.02 1.21 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.56 8.07 -2.39 -0.02 1.54 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.96 4.74 -2.39 -0.01 1.95 16 Total: -1.00 -57.12 289.83 2.41 -54.71 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.99 Total: 17.80 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.07 Total: -39.26 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -3.68 Total: -78.57 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -57.12 2.41 -54.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309930679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.393 kcal (2) G-P(sol) polarization free energy of solvation -57.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds