Wall clock time and date at job start Sun Mar 29 2020 21:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00314 * 2 1 4 4 C 1.50705 * 109.47084 * 293.95410 * 3 2 1 5 5 H 1.08006 * 119.99693 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00099 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99743 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00240 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47086 * 59.99718 * 8 6 4 10 10 H 1.48496 * 109.47200 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46674 * 299.99814 * 8 6 4 12 12 C 1.46905 * 110.99695 * 123.95288 * 2 1 3 13 13 C 1.53004 * 109.47215 * 66.04920 * 12 2 1 14 14 C 1.53000 * 109.47093 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.46965 * 179.97438 * 14 13 12 16 16 C 1.34675 * 126.59403 * 85.02209 * 15 14 13 17 17 N 1.34124 * 108.02139 * 179.73770 * 16 15 14 18 18 C 1.30503 * 109.25583 * 359.97438 * 17 16 15 19 19 N 1.35041 * 108.69928 * 0.02562 * 18 17 16 20 20 C 1.46499 * 126.39322 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47296 * 296.04571 * 1 2 3 22 22 H 1.08999 * 109.47073 * 56.05183 * 1 2 3 23 23 H 1.09002 * 109.47103 * 176.04706 * 1 2 3 24 24 H 1.09002 * 109.46736 * 53.95049 * 3 2 1 25 25 H 1.08993 * 109.47393 * 173.95452 * 3 2 1 26 26 H 0.97006 * 119.99434 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47513 * 306.04601 * 12 2 1 28 28 H 1.09002 * 109.46731 * 186.04472 * 12 2 1 29 29 H 1.09002 * 109.47301 * 59.99642 * 13 12 2 30 30 H 1.09008 * 109.46801 * 299.99901 * 13 12 2 31 31 H 1.08989 * 109.47189 * 59.99859 * 14 13 12 32 32 H 1.09002 * 109.46725 * 299.99473 * 14 13 12 33 33 H 1.07993 * 125.98561 * 359.73433 * 16 15 14 34 34 H 1.07997 * 125.64670 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.47289 * 269.95547 * 20 19 18 36 36 H 1.08996 * 109.47327 * 29.95915 * 20 19 18 37 37 H 1.09002 * 109.46825 * 149.95962 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0746 1.5111 -2.0488 6 6 2.0269 3.3494 -1.5285 7 7 2.7112 4.0021 -0.6146 8 14 1.5831 4.1867 -3.1383 9 1 0.1060 4.2229 -3.2867 10 1 2.1142 5.5735 -3.1378 11 1 2.1760 3.4296 -4.2699 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2427 0.9704 14 6 2.1791 -3.0403 2.1556 15 6 1.8201 -4.4946 1.9911 16 6 2.5044 -5.4158 1.2862 17 7 1.8587 -6.5862 1.3961 18 6 0.8005 -6.4255 2.1428 19 7 0.7392 -5.1347 2.5347 20 6 -0.2914 -4.5322 3.3839 21 1 -0.3634 0.4512 0.9233 22 1 -0.3633 0.5739 -0.8525 23 1 -0.3633 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3443 0.1082 26 1 2.9852 4.9185 -0.7763 27 1 1.5611 -0.3873 2.0628 28 1 3.0797 -0.6611 1.1757 29 1 2.0658 -2.6214 0.0452 30 1 0.5471 -2.3475 0.9323 31 1 1.7444 -2.6615 3.0805 32 1 3.2634 -2.9355 2.1940 33 1 3.4136 -5.2423 0.7299 34 1 0.0915 -7.1971 2.4040 35 1 -1.1017 -4.1551 2.7598 36 1 -0.6812 -5.2835 4.0707 37 1 0.1419 -3.7097 3.9529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314404828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:15 Heat of formation + Delta-G solvation = 54.742366 kcal Electronic energy + Delta-G solvation = -16383.688174 eV Core-core repulsion = 13775.870864 eV Total energy + Delta-G solvation = -2607.817310 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.12132 -37.06186 -34.33888 -33.74459 -32.35867 -29.39657 -27.17752 -27.08937 -26.12632 -24.13921 -21.59887 -21.40996 -20.01246 -19.80470 -17.09809 -16.32388 -15.80100 -15.34538 -14.86434 -14.42896 -14.35351 -13.82566 -13.44247 -13.26288 -13.10205 -13.00006 -12.65401 -11.96696 -11.92402 -11.71947 -11.25306 -11.00893 -10.87919 -10.64492 -10.48388 -10.26712 -9.96547 -9.78901 -9.63874 -9.21088 -8.43158 -8.32668 -7.23602 -6.02441 -4.03778 1.98348 2.68886 3.14745 3.33896 3.37749 3.41050 4.41996 4.49151 4.59409 4.63998 4.84729 4.96044 5.00968 5.14199 5.32848 5.35553 5.49182 5.65104 5.69382 5.78564 5.90946 6.06009 6.18262 6.22561 6.34358 6.51023 6.58060 6.72965 6.75697 7.11587 7.29617 7.34169 7.80545 8.03250 8.09515 8.20643 8.56157 9.03699 9.60442 11.08487 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050970 B = 0.003940 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.206259 B = 7105.655814 C = 7158.731976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.541 5.541 3 C 0.192 3.808 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.056 3.944 13 C -0.107 4.107 14 C -0.044 4.044 15 C -0.012 4.012 16 C -0.029 4.029 17 N -0.494 5.494 18 C 0.169 3.831 19 N -0.461 5.461 20 C 0.071 3.929 21 H 0.008 0.992 22 H 0.073 0.927 23 H 0.044 0.956 24 H -0.010 1.010 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.169 0.831 34 H 0.202 0.798 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -15.721 9.226 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.266 5.266 3 C 0.067 3.933 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.083 4.083 15 C -0.126 4.126 16 C -0.177 4.177 17 N -0.212 5.212 18 C -0.113 4.113 19 N -0.144 5.144 20 C -0.072 4.072 21 H 0.027 0.973 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.007 0.993 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.186 0.814 34 H 0.218 0.782 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.887 -16.440 8.556 19.166 hybrid contribution -0.851 1.707 0.370 1.942 sum -5.738 -14.733 8.925 18.156 Atomic orbital electron populations 1.22232 0.89198 0.99347 1.00368 1.62085 1.06776 1.17806 1.39888 1.19731 0.95384 0.81601 0.96553 1.21142 1.34865 0.96916 1.01733 0.91920 1.24991 0.95295 0.97341 0.97000 1.69954 1.38421 1.11472 1.34111 0.86554 0.78671 0.78326 0.83827 1.20311 1.21350 1.20103 1.22049 1.00140 0.92622 0.92485 1.21589 1.00582 0.94730 0.97627 1.20090 1.02175 0.86717 0.99344 1.21388 0.91234 0.96741 1.03246 1.22082 1.02459 0.88521 1.04639 1.70245 1.06447 1.26675 1.17868 1.24852 1.00033 0.85550 1.00818 1.45307 1.20624 1.09819 1.38696 1.22033 0.90561 0.99979 0.94602 0.97331 0.90829 0.93701 0.99258 0.95209 0.92881 0.96286 0.91290 0.90727 0.92551 0.91622 0.89372 0.81380 0.78183 0.90402 0.89570 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.54 -11.73 4.75 -244.37 -1.16 -12.90 16 3 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 4 C -0.51 -14.40 8.46 -34.44 -0.29 -14.69 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.38 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.06 0.97 4.96 -3.82 -0.02 0.95 16 13 C -0.11 -1.51 5.12 -26.73 -0.14 -1.64 16 14 C -0.04 -0.50 5.55 -27.88 -0.15 -0.66 16 15 C -0.01 -0.14 6.21 -81.60 -0.51 -0.65 16 16 C -0.03 -0.40 11.79 -17.81 -0.21 -0.61 16 17 N -0.49 -6.97 11.25 -14.67 -0.17 -7.14 16 18 C 0.17 1.85 12.56 -90.37 -1.14 0.72 16 19 N -0.46 -4.82 3.15 -121.37 -0.38 -5.20 16 20 C 0.07 0.46 11.01 59.85 0.66 1.12 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 23 H 0.04 0.75 6.47 -51.93 -0.34 0.41 16 24 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 25 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 28 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.80 6.55 -51.92 -0.34 0.46 16 31 H 0.07 0.67 7.08 -51.93 -0.37 0.31 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.53 7.11 -51.93 -0.37 0.16 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -32.98 306.61 -8.64 -41.62 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.90 Total: -3.92 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.37 Total: -7.68 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.97 Total: -51.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.98 -8.64 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314404828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.366 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds