Wall clock time and date at job start Sun Mar 29 2020 21:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00314 * 2 1 4 4 C 1.50705 * 109.47084 * 293.95410 * 3 2 1 5 5 H 1.08006 * 119.99693 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00099 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99743 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00240 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47086 * 59.99718 * 8 6 4 10 10 H 1.48496 * 109.47200 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46674 * 299.99814 * 8 6 4 12 12 C 1.46905 * 110.99695 * 123.95288 * 2 1 3 13 13 C 1.53004 * 109.47215 * 66.04920 * 12 2 1 14 14 C 1.53000 * 109.47093 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.46965 * 179.97438 * 14 13 12 16 16 C 1.34675 * 126.59403 * 85.02209 * 15 14 13 17 17 N 1.34124 * 108.02139 * 179.73770 * 16 15 14 18 18 C 1.30503 * 109.25583 * 359.97438 * 17 16 15 19 19 N 1.35041 * 108.69928 * 0.02562 * 18 17 16 20 20 C 1.46499 * 126.39322 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47296 * 296.04571 * 1 2 3 22 22 H 1.08999 * 109.47073 * 56.05183 * 1 2 3 23 23 H 1.09002 * 109.47103 * 176.04706 * 1 2 3 24 24 H 1.09002 * 109.46736 * 53.95049 * 3 2 1 25 25 H 1.08993 * 109.47393 * 173.95452 * 3 2 1 26 26 H 0.97006 * 119.99434 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47513 * 306.04601 * 12 2 1 28 28 H 1.09002 * 109.46731 * 186.04472 * 12 2 1 29 29 H 1.09002 * 109.47301 * 59.99642 * 13 12 2 30 30 H 1.09008 * 109.46801 * 299.99901 * 13 12 2 31 31 H 1.08989 * 109.47189 * 59.99859 * 14 13 12 32 32 H 1.09002 * 109.46725 * 299.99473 * 14 13 12 33 33 H 1.07993 * 125.98561 * 359.73433 * 16 15 14 34 34 H 1.07997 * 125.64670 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.47289 * 269.95547 * 20 19 18 36 36 H 1.08996 * 109.47327 * 29.95915 * 20 19 18 37 37 H 1.09002 * 109.46825 * 149.95962 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0746 1.5111 -2.0488 6 6 2.0269 3.3494 -1.5285 7 7 2.7112 4.0021 -0.6146 8 14 1.5831 4.1867 -3.1383 9 1 0.1060 4.2229 -3.2867 10 1 2.1142 5.5735 -3.1378 11 1 2.1760 3.4296 -4.2699 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2427 0.9704 14 6 2.1791 -3.0403 2.1556 15 6 1.8201 -4.4946 1.9911 16 6 2.5044 -5.4158 1.2862 17 7 1.8587 -6.5862 1.3961 18 6 0.8005 -6.4255 2.1428 19 7 0.7392 -5.1347 2.5347 20 6 -0.2914 -4.5322 3.3839 21 1 -0.3634 0.4512 0.9233 22 1 -0.3633 0.5739 -0.8525 23 1 -0.3633 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3443 0.1082 26 1 2.9852 4.9185 -0.7763 27 1 1.5611 -0.3873 2.0628 28 1 3.0797 -0.6611 1.1757 29 1 2.0658 -2.6214 0.0452 30 1 0.5471 -2.3475 0.9323 31 1 1.7444 -2.6615 3.0805 32 1 3.2634 -2.9355 2.1940 33 1 3.4136 -5.2423 0.7299 34 1 0.0915 -7.1971 2.4040 35 1 -1.1017 -4.1551 2.7598 36 1 -0.6812 -5.2835 4.0707 37 1 0.1419 -3.7097 3.9529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314404828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:15 Heat of formation + Delta-G solvation = 34.154392 kcal Electronic energy + Delta-G solvation = -16384.580936 eV Core-core repulsion = 13775.870864 eV Total energy + Delta-G solvation = -2608.710072 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.97125 -38.66591 -35.54160 -34.81764 -34.19472 -30.65548 -29.00976 -27.77034 -27.51908 -25.73461 -23.16196 -22.31835 -21.55858 -20.69169 -18.49964 -17.87046 -16.84543 -16.58827 -16.45269 -15.99367 -15.52674 -15.20477 -14.68573 -14.53716 -14.06687 -13.80204 -13.79094 -13.41106 -13.29482 -13.12506 -12.86011 -12.70012 -12.47358 -12.37738 -12.17803 -11.92648 -11.45106 -11.25084 -10.87558 -10.61212 -10.45312 -9.25273 -9.00067 -8.20532 -6.30825 1.12455 1.41333 1.44627 1.52571 1.97974 2.22398 2.40691 3.11824 3.33334 3.75452 3.93791 3.96456 4.03772 4.31184 4.35890 4.40258 4.46119 4.54303 4.68126 4.69178 4.71228 4.77426 4.87630 4.90423 5.06604 5.14327 5.19933 5.29609 5.39143 5.52661 5.65329 5.82832 6.05884 6.33910 6.36424 6.66452 6.85351 7.15894 7.39051 8.90352 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050970 B = 0.003940 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.206259 B = 7105.655814 C = 7158.731976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.554 5.554 3 C 0.206 3.794 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.056 3.944 13 C -0.090 4.090 14 C -0.033 4.033 15 C -0.019 4.019 16 C -0.056 4.056 17 N -0.538 5.538 18 C 0.176 3.824 19 N -0.460 5.460 20 C 0.063 3.937 21 H 0.012 0.988 22 H 0.053 0.947 23 H 0.077 0.923 24 H -0.037 1.037 25 H 0.004 0.996 26 H 0.265 0.735 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.168 0.832 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 -16.538 9.504 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.278 5.278 3 C 0.080 3.920 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.072 4.072 13 C -0.128 4.128 14 C -0.072 4.072 15 C -0.134 4.134 16 C -0.203 4.203 17 N -0.256 5.256 18 C -0.106 4.106 19 N -0.143 5.143 20 C -0.078 4.078 21 H 0.030 0.970 22 H 0.072 0.928 23 H 0.096 0.904 24 H -0.020 1.020 25 H 0.022 0.978 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.185 0.815 34 H 0.254 0.746 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.431 -17.270 8.851 20.444 hybrid contribution -0.403 1.894 0.350 1.967 sum -6.834 -15.377 9.200 19.178 Atomic orbital electron populations 1.22213 0.87737 1.01081 0.99647 1.62001 1.08202 1.15225 1.42353 1.19388 0.93696 0.83948 0.94953 1.21468 1.35015 0.97562 1.02467 0.91990 1.25915 0.94964 0.98029 1.00715 1.70079 1.39328 1.11902 1.36217 0.85439 0.78861 0.77182 0.79162 1.19171 1.20743 1.19404 1.22127 0.99722 0.94065 0.91294 1.21390 1.00710 0.92409 0.98298 1.19960 1.02504 0.86063 0.98713 1.21365 0.91927 0.96683 1.03439 1.22275 1.03173 0.89177 1.05634 1.70207 1.08159 1.27379 1.19884 1.25580 0.99450 0.86451 0.99165 1.45543 1.20616 1.09645 1.38466 1.22347 0.89691 1.01053 0.94694 0.96993 0.92785 0.90422 1.01950 0.97803 0.92644 0.95486 0.91920 0.92145 0.92151 0.89858 0.88936 0.81512 0.74558 0.89790 0.86675 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.55 -24.02 4.75 -927.05 -4.41 -28.42 16 3 C 0.21 11.14 4.72 85.56 0.40 11.54 16 4 C -0.53 -30.25 8.46 25.60 0.22 -30.03 16 5 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 6 C 0.00 0.10 5.46 84.65 0.46 0.56 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 C 0.06 1.91 4.96 86.30 0.43 2.34 16 13 C -0.09 -2.40 5.12 30.60 0.16 -2.25 16 14 C -0.03 -0.71 5.55 29.85 0.17 -0.54 16 15 C -0.02 -0.42 6.21 40.95 0.25 -0.17 16 16 C -0.06 -1.48 11.79 83.53 0.98 -0.50 16 17 N -0.54 -14.73 11.25 -200.32 -2.25 -16.98 16 18 C 0.18 3.46 12.56 180.26 2.26 5.72 16 19 N -0.46 -8.45 3.15 -537.89 -1.70 -10.14 16 20 C 0.06 0.61 11.01 127.77 1.41 2.02 16 21 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 22 H 0.05 2.25 6.76 -2.39 -0.02 2.24 16 23 H 0.08 2.43 6.47 -2.39 -0.02 2.42 16 24 H -0.04 -2.16 8.12 -2.39 -0.02 -2.18 16 25 H 0.00 0.22 7.93 -2.39 -0.02 0.20 16 26 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 27 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 28 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.57 6.55 -2.38 -0.02 1.55 16 31 H 0.08 1.48 7.08 -2.39 -0.02 1.46 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.17 4.17 8.06 -2.91 -0.02 4.14 16 34 H 0.24 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.81 7.11 -2.39 -0.02 0.80 16 Total: -1.00 -71.86 306.61 2.89 -68.97 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.03 Total: 4.93 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 7.91 Total: -8.56 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -8.07 Total: -111.83 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.86 2.89 -68.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314404828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.121 kcal (2) G-P(sol) polarization free energy of solvation -71.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds