Wall clock time and date at job start Sun Mar 29 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46966 * 2 1 4 4 H 1.08993 * 109.47410 * 54.03542 * 3 2 1 5 5 N 1.46909 * 109.46742 * 294.03331 * 3 2 1 6 6 C 1.46900 * 110.99456 * 105.03262 * 5 3 2 7 7 C 1.52999 * 109.46875 * 84.29570 * 6 5 3 8 8 C 1.50699 * 115.55316 * 39.63457 * 7 6 5 9 9 H 1.07991 * 120.00159 * 264.83490 * 8 7 6 10 10 C 1.37879 * 119.99661 * 84.83619 * 8 7 6 11 11 N 1.31515 * 120.00363 * 1.79929 * 10 8 7 12 12 Si 1.86805 * 119.99848 * 181.79816 * 10 8 7 13 13 H 1.48492 * 109.47210 * 90.00234 * 12 10 8 14 14 H 1.48505 * 109.47051 * 210.00196 * 12 10 8 15 15 H 1.48502 * 109.46954 * 329.99701 * 12 10 8 16 16 C 1.53003 * 117.49848 * 253.92697 * 7 6 5 17 17 C 1.53003 * 60.00280 * 252.51399 * 16 7 6 18 18 C 1.53001 * 109.47167 * 174.03685 * 3 2 1 19 19 C 1.53785 * 113.61348 * 39.13393 * 18 3 2 20 20 C 1.53954 * 87.01729 * 220.05122 * 19 18 3 21 21 C 1.53777 * 113.61417 * 301.52560 * 18 3 2 22 22 H 1.08997 * 109.47288 * 303.09310 * 1 2 3 23 23 H 1.08997 * 109.47167 * 63.09412 * 1 2 3 24 24 H 1.08998 * 109.46930 * 183.09239 * 1 2 3 25 25 H 1.08993 * 109.47421 * 239.99591 * 2 1 3 26 26 H 1.09001 * 109.47176 * 119.99133 * 2 1 3 27 27 H 1.00894 * 110.99677 * 341.08123 * 5 3 2 28 28 H 1.09005 * 109.46944 * 204.29000 * 6 5 3 29 29 H 1.08991 * 109.47515 * 324.28865 * 6 5 3 30 30 H 0.96999 * 120.00079 * 185.02588 * 11 10 8 31 31 H 1.09005 * 117.49589 * 359.97438 * 16 7 6 32 32 H 1.09000 * 117.50111 * 145.01864 * 16 7 6 33 33 H 1.08996 * 117.49611 * 252.51492 * 17 16 7 34 34 H 1.08995 * 117.51880 * 107.48046 * 17 16 7 35 35 H 1.08997 * 112.84832 * 170.32828 * 18 3 2 36 36 H 1.09005 * 113.61379 * 334.56393 * 19 18 3 37 37 H 1.08993 * 113.61485 * 105.46969 * 19 18 3 38 38 H 1.09002 * 113.53669 * 270.80876 * 20 19 18 39 39 H 1.09002 * 113.74363 * 139.94810 * 20 19 18 40 40 H 1.09001 * 113.61739 * 254.52929 * 21 18 3 41 41 H 1.09003 * 113.61154 * 25.43159 * 21 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5921 1.9863 0.8317 5 7 1.6713 2.0922 -1.2650 6 6 0.5560 3.0282 -1.0705 7 6 1.0992 4.3765 -0.5931 8 6 2.3801 4.8291 -1.2454 9 1 3.3286 4.6289 -0.7694 10 6 2.3411 5.4987 -2.4501 11 7 1.1845 5.7737 -3.0125 12 14 3.9311 6.0153 -3.2834 13 1 4.3929 4.9297 -4.1852 14 1 3.6968 7.2500 -4.0747 15 1 4.9677 6.2773 -2.2528 16 6 0.8867 4.7433 0.8770 17 6 0.0812 5.4536 -0.2128 18 6 3.5626 1.4452 0.1499 19 6 4.2610 0.3232 -0.6365 20 6 5.1930 0.1618 0.5782 21 6 4.0568 0.7516 1.4303 22 1 -0.3634 0.5611 0.8609 23 1 -0.3633 0.4650 -0.9164 24 1 -0.3633 -1.0262 0.0554 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.4495 1.4073 -1.9719 28 1 0.0263 3.1633 -2.0136 29 1 -0.1288 2.6273 -0.3234 30 1 1.1577 6.1791 -3.8933 31 1 0.3595 4.0241 1.5040 32 1 1.6735 5.3119 1.3727 33 1 0.3382 6.4895 -0.4340 34 1 -0.9754 5.2018 -0.3030 35 1 4.0020 2.4297 -0.0108 36 1 3.6256 -0.5439 -0.8174 37 1 4.7698 0.6713 -1.5353 38 1 6.0793 0.7948 0.5340 39 1 5.4255 -0.8757 0.8182 40 1 4.4011 1.4450 2.1975 41 1 3.3655 0.0019 1.8153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325008437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:14 Heat of formation + Delta-G solvation = 37.211105 kcal Electronic energy + Delta-G solvation = -18055.436552 eV Core-core repulsion = 15550.399372 eV Total energy + Delta-G solvation = -2505.037180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23091 -36.80678 -34.79752 -31.67532 -31.11661 -27.65632 -25.43636 -25.26443 -23.79636 -22.83775 -21.12883 -20.72450 -18.81518 -18.08145 -15.80886 -15.48012 -15.00096 -14.78346 -14.48287 -14.24636 -13.64736 -12.94065 -12.80380 -12.61273 -12.26660 -12.13078 -11.76579 -11.34878 -11.12323 -11.01484 -10.81956 -10.78583 -10.60659 -10.51730 -10.37425 -10.08235 -9.97506 -9.70493 -9.53168 -9.26332 -8.75825 -8.18803 -7.85200 -7.23135 -5.79517 -3.78873 3.43456 3.49169 3.52186 4.60116 4.83362 5.00006 5.11456 5.14620 5.27254 5.37579 5.46636 5.48534 5.51205 5.63849 5.89495 5.98695 5.99401 6.02582 6.14772 6.18222 6.26158 6.26904 6.30129 6.36973 6.42540 6.54001 6.57627 6.63595 6.72019 6.78506 6.86320 7.05844 7.11519 7.23455 7.58024 7.66608 8.11635 8.14406 8.44920 8.72733 9.16981 9.81961 11.30560 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.009305 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.013470 B = 3008.252748 C = 3719.132168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.104 3.896 4 H 0.068 0.932 5 N -0.651 5.651 6 C 0.106 3.894 7 C 0.057 3.943 8 C -0.443 4.443 9 H 0.054 0.946 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.293 1.293 15 H -0.278 1.278 16 C -0.219 4.219 17 C -0.159 4.159 18 C -0.084 4.084 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.144 4.144 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.322 0.678 28 H 0.060 0.940 29 H 0.004 0.996 30 H 0.254 0.746 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -11.188 5.806 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.190 4.190 3 C -0.007 4.007 4 H 0.086 0.914 5 N -0.279 5.279 6 C -0.023 4.023 7 C 0.056 3.944 8 C -0.482 4.482 9 H 0.073 0.927 10 C -0.134 4.134 11 N -0.531 5.531 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.219 1.219 15 H -0.203 1.203 16 C -0.256 4.256 17 C -0.197 4.197 18 C -0.103 4.103 19 C -0.176 4.176 20 C -0.181 4.181 21 C -0.182 4.182 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.821 -10.535 5.712 12.121 hybrid contribution 0.026 -0.297 -0.456 0.545 sum 1.847 -10.831 5.256 12.180 Atomic orbital electron populations 1.21828 0.96453 1.00763 1.01992 1.22351 0.95448 0.99269 1.01892 1.21440 0.94541 0.91160 0.93519 0.91380 1.60118 1.42008 1.19245 1.06497 1.21547 0.89395 0.92875 0.98490 1.18905 0.95682 0.90498 0.89325 1.20136 0.90471 1.32644 1.04909 0.92743 1.24857 0.95320 0.95630 0.97563 1.69994 1.23552 1.44309 1.15289 0.86731 0.84632 0.77673 0.79680 1.20903 1.21885 1.20282 1.23043 1.03704 1.04912 0.93983 1.22483 0.94762 0.99374 1.03129 1.22508 0.95183 0.98747 0.93883 1.23028 0.98204 0.99302 0.97052 1.22817 0.97302 1.00030 0.97917 1.23051 0.98007 0.99887 0.97294 0.92966 0.92684 0.93409 0.91641 0.91962 0.86106 0.92110 0.97753 0.93647 0.92493 0.90905 0.90022 0.92512 0.88123 0.90428 0.91833 0.90714 0.92489 0.92133 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.83 37.16 0.33 -1.67 16 2 C -0.15 -2.02 4.18 -26.73 -0.11 -2.13 16 3 C 0.10 1.71 2.14 -67.70 -0.14 1.57 16 4 H 0.07 1.25 7.18 -51.93 -0.37 0.87 16 5 N -0.65 -12.57 5.38 -106.72 -0.57 -13.15 16 6 C 0.11 2.29 5.16 -3.82 -0.02 2.27 16 7 C 0.06 1.38 1.63 -155.65 -0.25 1.13 16 8 C -0.44 -11.97 8.16 -34.44 -0.28 -12.25 16 9 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 10 C 0.07 1.84 5.42 -17.82 -0.10 1.75 16 11 N -0.89 -25.61 12.72 55.43 0.71 -24.91 16 12 Si 0.88 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C -0.22 -4.87 9.64 -26.73 -0.26 -5.13 16 17 C -0.16 -3.83 9.25 -26.72 -0.25 -4.08 16 18 C -0.08 -1.35 3.90 -89.81 -0.35 -1.70 16 19 C -0.14 -1.96 7.36 -25.83 -0.19 -2.15 16 20 C -0.14 -1.81 8.09 -25.83 -0.21 -2.02 16 21 C -0.14 -1.94 7.46 -25.92 -0.19 -2.14 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.77 6.93 -51.93 -0.36 0.41 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.85 6.34 -51.93 -0.33 0.52 16 26 H 0.06 0.77 6.18 -51.93 -0.32 0.45 16 27 H 0.32 5.76 7.91 -39.29 -0.31 5.45 16 28 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.00 0.09 6.46 -51.93 -0.34 -0.25 16 30 H 0.25 7.08 8.32 -40.82 -0.34 6.74 16 31 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.08 1.01 5.63 -51.93 -0.29 0.72 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.93 6.23 -51.93 -0.32 0.61 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -27.77 316.81 -9.40 -37.17 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.26 Total: 5.86 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -2.03 Total: -26.57 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.13 Total: -38.05 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.77 -9.40 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325008437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.384 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds