Wall clock time and date at job start Sun Mar 29 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46966 * 2 1 4 4 H 1.08993 * 109.47410 * 54.03542 * 3 2 1 5 5 N 1.46909 * 109.46742 * 294.03331 * 3 2 1 6 6 C 1.46900 * 110.99456 * 105.03262 * 5 3 2 7 7 C 1.52999 * 109.46875 * 84.29570 * 6 5 3 8 8 C 1.50699 * 115.55316 * 39.63457 * 7 6 5 9 9 H 1.07991 * 120.00159 * 264.83490 * 8 7 6 10 10 C 1.37879 * 119.99661 * 84.83619 * 8 7 6 11 11 N 1.31515 * 120.00363 * 1.79929 * 10 8 7 12 12 Si 1.86805 * 119.99848 * 181.79816 * 10 8 7 13 13 H 1.48492 * 109.47210 * 90.00234 * 12 10 8 14 14 H 1.48505 * 109.47051 * 210.00196 * 12 10 8 15 15 H 1.48502 * 109.46954 * 329.99701 * 12 10 8 16 16 C 1.53003 * 117.49848 * 253.92697 * 7 6 5 17 17 C 1.53003 * 60.00280 * 252.51399 * 16 7 6 18 18 C 1.53001 * 109.47167 * 174.03685 * 3 2 1 19 19 C 1.53785 * 113.61348 * 39.13393 * 18 3 2 20 20 C 1.53954 * 87.01729 * 220.05122 * 19 18 3 21 21 C 1.53777 * 113.61417 * 301.52560 * 18 3 2 22 22 H 1.08997 * 109.47288 * 303.09310 * 1 2 3 23 23 H 1.08997 * 109.47167 * 63.09412 * 1 2 3 24 24 H 1.08998 * 109.46930 * 183.09239 * 1 2 3 25 25 H 1.08993 * 109.47421 * 239.99591 * 2 1 3 26 26 H 1.09001 * 109.47176 * 119.99133 * 2 1 3 27 27 H 1.00894 * 110.99677 * 341.08123 * 5 3 2 28 28 H 1.09005 * 109.46944 * 204.29000 * 6 5 3 29 29 H 1.08991 * 109.47515 * 324.28865 * 6 5 3 30 30 H 0.96999 * 120.00079 * 185.02588 * 11 10 8 31 31 H 1.09005 * 117.49589 * 359.97438 * 16 7 6 32 32 H 1.09000 * 117.50111 * 145.01864 * 16 7 6 33 33 H 1.08996 * 117.49611 * 252.51492 * 17 16 7 34 34 H 1.08995 * 117.51880 * 107.48046 * 17 16 7 35 35 H 1.08997 * 112.84832 * 170.32828 * 18 3 2 36 36 H 1.09005 * 113.61379 * 334.56393 * 19 18 3 37 37 H 1.08993 * 113.61485 * 105.46969 * 19 18 3 38 38 H 1.09002 * 113.53669 * 270.80876 * 20 19 18 39 39 H 1.09002 * 113.74363 * 139.94810 * 20 19 18 40 40 H 1.09001 * 113.61739 * 254.52929 * 21 18 3 41 41 H 1.09003 * 113.61154 * 25.43159 * 21 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5921 1.9863 0.8317 5 7 1.6713 2.0922 -1.2650 6 6 0.5560 3.0282 -1.0705 7 6 1.0992 4.3765 -0.5931 8 6 2.3801 4.8291 -1.2454 9 1 3.3286 4.6289 -0.7694 10 6 2.3411 5.4987 -2.4501 11 7 1.1845 5.7737 -3.0125 12 14 3.9311 6.0153 -3.2834 13 1 4.3929 4.9297 -4.1852 14 1 3.6968 7.2500 -4.0747 15 1 4.9677 6.2773 -2.2528 16 6 0.8867 4.7433 0.8770 17 6 0.0812 5.4536 -0.2128 18 6 3.5626 1.4452 0.1499 19 6 4.2610 0.3232 -0.6365 20 6 5.1930 0.1618 0.5782 21 6 4.0568 0.7516 1.4303 22 1 -0.3634 0.5611 0.8609 23 1 -0.3633 0.4650 -0.9164 24 1 -0.3633 -1.0262 0.0554 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.4495 1.4073 -1.9719 28 1 0.0263 3.1633 -2.0136 29 1 -0.1288 2.6273 -0.3234 30 1 1.1577 6.1791 -3.8933 31 1 0.3595 4.0241 1.5040 32 1 1.6735 5.3119 1.3727 33 1 0.3382 6.4895 -0.4340 34 1 -0.9754 5.2018 -0.3030 35 1 4.0020 2.4297 -0.0108 36 1 3.6256 -0.5439 -0.8174 37 1 4.7698 0.6713 -1.5353 38 1 6.0793 0.7948 0.5340 39 1 5.4255 -0.8757 0.8182 40 1 4.4011 1.4450 2.1975 41 1 3.3655 0.0019 1.8153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325008437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:14 Heat of formation + Delta-G solvation = 22.799751 kcal Electronic energy + Delta-G solvation = -18056.061475 eV Core-core repulsion = 15550.399372 eV Total energy + Delta-G solvation = -2505.662103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46749 -38.52952 -36.21639 -33.79505 -32.44668 -28.94243 -27.45831 -26.44396 -25.36476 -24.00400 -22.90768 -22.04653 -20.77053 -19.27538 -17.79345 -16.75271 -16.49690 -16.30609 -16.01002 -15.69730 -15.36140 -14.70285 -14.14215 -13.80690 -13.58019 -13.46109 -13.23021 -13.09148 -12.79486 -12.69934 -12.36135 -12.32067 -12.17228 -11.93924 -11.92407 -11.60036 -11.37274 -11.12968 -10.89871 -10.78435 -10.65233 -10.24605 -9.77307 -8.74015 -7.93459 -5.96393 1.43444 1.45180 1.52431 2.53284 3.35629 3.45982 3.62710 3.86737 4.00847 4.05314 4.15597 4.29801 4.34679 4.38683 4.47074 4.56071 4.79839 4.82120 4.85628 4.87778 4.94420 4.96330 5.01735 5.07085 5.14774 5.19209 5.20389 5.24204 5.25203 5.32209 5.39678 5.44851 5.61842 5.69522 5.77714 5.83944 5.95900 6.50086 6.73837 6.97215 7.04822 7.66045 9.15670 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.009305 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.013470 B = 3008.252748 C = 3719.132168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.049 0.951 5 N -0.666 5.666 6 C 0.122 3.878 7 C 0.034 3.966 8 C -0.444 4.444 9 H 0.040 0.960 10 C 0.022 3.978 11 N -0.918 5.918 12 Si 0.936 3.064 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.276 1.276 16 C -0.195 4.195 17 C -0.167 4.167 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.135 4.135 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.329 0.671 28 H 0.034 0.966 29 H 0.021 0.979 30 H 0.252 0.748 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -13.366 6.823 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C -0.002 4.002 4 H 0.068 0.932 5 N -0.295 5.295 6 C -0.007 4.007 7 C 0.033 3.967 8 C -0.483 4.483 9 H 0.058 0.942 10 C -0.175 4.175 11 N -0.558 5.558 12 Si 0.764 3.236 13 H -0.207 1.207 14 H -0.219 1.219 15 H -0.201 1.201 16 C -0.232 4.232 17 C -0.205 4.205 18 C -0.117 4.117 19 C -0.172 4.172 20 C -0.172 4.172 21 C -0.172 4.172 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.147 0.853 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.192 -12.720 6.740 14.561 hybrid contribution -0.069 0.401 -0.733 0.838 sum 2.122 -12.319 6.007 13.869 Atomic orbital electron populations 1.21808 0.96066 1.01977 1.01018 1.22239 0.95675 0.96831 1.03159 1.21420 0.94686 0.92845 0.91276 0.93236 1.60027 1.41178 1.19939 1.08393 1.21234 0.89975 0.92180 0.97342 1.19072 0.94930 0.91816 0.90849 1.20287 0.91073 1.32031 1.04901 0.94211 1.25422 0.97643 0.96111 0.98338 1.70093 1.24926 1.45399 1.15432 0.85898 0.81772 0.77184 0.78711 1.20713 1.21852 1.20098 1.22996 1.02786 1.04241 0.93170 1.22382 0.95521 0.97941 1.04698 1.22438 0.94869 0.97543 0.96803 1.23035 0.98487 0.98874 0.96792 1.22774 0.96631 1.01347 0.96410 1.23027 0.98383 0.99806 0.96011 0.93503 0.94061 0.91158 0.90825 0.90045 0.85293 0.94728 0.96054 0.93932 0.89838 0.91409 0.92719 0.91297 0.92431 0.88648 0.93494 0.91166 0.90039 0.92418 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.83 71.98 0.64 -2.89 16 2 C -0.14 -3.34 4.18 30.60 0.13 -3.21 16 3 C 0.11 3.41 2.14 44.92 0.10 3.51 16 4 H 0.05 1.75 7.18 -2.39 -0.02 1.73 16 5 N -0.67 -25.59 5.38 -491.56 -2.65 -28.24 16 6 C 0.12 5.27 5.16 86.30 0.45 5.72 16 7 C 0.03 1.68 1.63 -52.92 -0.09 1.59 16 8 C -0.44 -24.46 8.16 25.60 0.21 -24.25 16 9 H 0.04 2.26 7.81 -2.92 -0.02 2.24 16 10 C 0.02 1.25 5.42 84.65 0.46 1.71 16 11 N -0.92 -53.70 12.72 21.45 0.27 -53.43 16 12 Si 0.94 45.60 29.54 68.60 2.03 47.62 16 13 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 14 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 C -0.19 -8.53 9.64 30.60 0.30 -8.23 16 17 C -0.17 -8.10 9.25 30.60 0.28 -7.82 16 18 C -0.10 -3.05 3.90 -10.27 -0.04 -3.09 16 19 C -0.13 -3.56 7.36 31.18 0.23 -3.33 16 20 C -0.13 -3.05 8.09 31.18 0.25 -2.80 16 21 C -0.13 -3.29 7.46 31.12 0.23 -3.06 16 22 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.04 1.07 6.93 -2.39 -0.02 1.05 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.66 6.34 -2.39 -0.02 1.65 16 26 H 0.08 1.66 6.18 -2.39 -0.01 1.65 16 27 H 0.33 11.62 7.91 -89.70 -0.71 10.91 16 28 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.02 0.84 6.46 -2.39 -0.02 0.82 16 30 H 0.25 14.29 8.32 -92.71 -0.77 13.52 16 31 H 0.08 3.21 8.08 -2.38 -0.02 3.19 16 32 H 0.07 3.01 8.14 -2.39 -0.02 3.00 16 33 H 0.05 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.10 2.18 5.63 -2.38 -0.01 2.17 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.97 6.23 -2.39 -0.01 1.96 16 Total: -1.00 -59.94 316.81 3.07 -56.87 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.28 Total: 23.34 kcal Atomic # 6 Polarization: -49.30 SS G_CDS: 3.14 Total: -46.16 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -2.37 Total: -81.67 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -59.94 3.07 -56.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325008437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.669 kcal (2) G-P(sol) polarization free energy of solvation -59.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds