Wall clock time and date at job start Sun Mar 29 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48495 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47001 * 299.99472 * 3 2 1 6 6 H 1.48497 * 109.47322 * 59.99391 * 3 2 1 7 7 C 1.37869 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47674 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47484 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47278 * 179.97438 * 11 10 9 13 13 C 1.46909 * 111.00203 * 184.05621 * 12 11 10 14 14 H 1.08999 * 109.47028 * 324.85222 * 13 12 11 15 15 C 1.53002 * 109.46889 * 84.85252 * 13 12 11 16 16 C 1.53001 * 117.49672 * 185.38146 * 15 13 12 17 17 C 1.52997 * 60.03266 * 107.47234 * 16 15 13 18 18 C 1.52995 * 109.46876 * 204.85346 * 13 12 11 19 19 C 1.53786 * 113.61080 * 159.13861 * 18 13 12 20 20 C 1.53959 * 87.01591 * 220.04594 * 19 18 13 21 21 C 1.53780 * 113.61703 * 61.52928 * 18 13 12 22 22 H 0.97000 * 120.00359 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47155 * 59.99212 * 9 7 2 24 24 H 1.09007 * 109.46598 * 299.99607 * 9 7 2 25 25 H 1.09004 * 109.47125 * 59.99392 * 10 9 7 26 26 H 1.09004 * 109.47019 * 300.00133 * 10 9 7 27 27 H 1.09004 * 109.47237 * 59.99704 * 11 10 9 28 28 H 1.08999 * 109.47505 * 299.99771 * 11 10 9 29 29 H 1.00903 * 111.00061 * 308.00633 * 12 11 10 30 30 H 1.08992 * 115.56328 * 39.68825 * 15 13 12 31 31 H 1.09003 * 117.49837 * 214.98177 * 16 15 13 32 32 H 1.09003 * 117.49567 * 359.96974 * 16 15 13 33 33 H 1.09007 * 117.49420 * 107.49734 * 17 16 15 34 34 H 1.08996 * 117.50052 * 252.51687 * 17 16 15 35 35 H 1.08998 * 112.85213 * 290.32719 * 18 13 12 36 36 H 1.09000 * 113.61623 * 334.56002 * 19 18 13 37 37 H 1.08996 * 113.61632 * 105.46895 * 19 18 13 38 38 H 1.09002 * 113.53366 * 270.80782 * 20 19 18 39 39 H 1.09003 * 113.66576 * 139.93943 * 20 19 18 40 40 H 1.08994 * 113.61670 * 254.52401 * 21 18 13 41 41 H 1.08999 * 113.61659 * 25.34812 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4350 -6.1035 0.0006 13 6 1.7373 -7.3928 -0.0959 14 1 0.7953 -7.3377 0.4497 15 6 1.4576 -7.7126 -1.5657 16 6 0.6232 -8.9580 -1.8713 17 6 0.0158 -7.5664 -2.0586 18 6 2.6127 -8.4927 0.5078 19 6 1.8261 -9.7468 0.9245 20 6 2.7281 -9.8001 2.1710 21 6 2.9225 -8.2843 1.9996 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 2.8721 -3.6042 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8534 -5.0450 -0.8886 28 1 0.8541 -5.0446 0.8914 29 1 3.1104 -6.0015 -0.7422 30 1 2.2562 -7.4584 -2.2625 31 1 0.8729 -9.5234 -2.7691 32 1 0.2739 -9.5498 -1.0251 33 1 -0.1340 -7.2160 -3.0799 34 1 -0.7328 -7.2424 -1.3357 35 1 3.4943 -8.7107 -0.0949 36 1 0.7785 -9.5496 1.1519 37 1 1.9620 -10.5918 0.2496 38 1 3.6412 -10.3769 2.0232 39 1 2.1977 -10.0720 3.0837 40 1 3.9422 -7.9505 2.1913 41 1 2.1760 -7.6854 2.5211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325109739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:36 Heat of formation + Delta-G solvation = 17.719028 kcal Electronic energy + Delta-G solvation = -16827.904565 eV Core-core repulsion = 14322.022146 eV Total energy + Delta-G solvation = -2505.882419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61397 -37.01750 -35.38800 -33.23449 -31.15126 -27.98246 -25.71691 -25.27480 -23.33253 -22.35857 -22.05475 -20.64538 -19.84366 -19.26608 -16.28469 -15.96604 -15.61499 -15.33882 -14.67417 -14.42799 -13.92039 -13.73865 -13.27528 -12.44105 -12.36277 -12.22343 -11.93456 -11.75044 -11.54427 -11.33126 -11.28909 -10.91111 -10.71696 -10.55907 -10.50891 -10.46363 -10.33377 -10.15683 -9.74200 -9.64384 -9.25716 -8.98289 -8.31350 -8.01417 -5.96391 -3.98231 3.33390 3.40662 3.45374 3.75729 4.30720 4.50052 4.51045 4.75073 4.82031 4.85879 4.97109 4.99672 5.20026 5.35611 5.39484 5.49421 5.59175 5.61472 5.76458 5.78411 5.84157 5.85335 5.88016 5.95007 6.03754 6.08475 6.14465 6.19138 6.32774 6.40073 6.57015 6.78989 6.85256 7.18929 7.45057 7.72127 7.74342 7.88590 8.04579 8.48104 9.09350 9.65686 11.15117 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.004310 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.394120 B = 6495.514789 C = 7025.492209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.060 3.940 12 N -0.679 5.679 13 C 0.127 3.873 14 H 0.074 0.926 15 C -0.179 4.179 16 C -0.176 4.176 17 C -0.179 4.179 18 C -0.091 4.091 19 C -0.134 4.134 20 C -0.149 4.149 21 C -0.117 4.117 22 H 0.259 0.741 23 H 0.013 0.987 24 H 0.015 0.985 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.337 0.663 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -20.056 -0.595 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.068 4.068 12 N -0.308 5.308 13 C 0.017 3.983 14 H 0.092 0.908 15 C -0.199 4.199 16 C -0.214 4.214 17 C -0.216 4.216 18 C -0.110 4.110 19 C -0.172 4.172 20 C -0.186 4.186 21 C -0.155 4.155 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.757 -19.933 0.110 20.123 hybrid contribution 0.064 1.017 -1.108 1.505 sum 2.822 -18.916 -0.998 19.152 Atomic orbital electron populations 1.69981 1.06054 1.26389 1.51233 1.25029 0.94837 0.99243 0.95437 0.86551 0.80161 0.83861 0.77531 1.19727 1.21074 1.21026 1.21306 0.93084 0.91087 1.50062 0.92652 1.19062 0.94031 0.91411 0.97058 1.21627 0.99159 0.93216 1.00555 1.22124 0.94275 0.90647 0.99777 1.60694 1.17211 1.00874 1.51993 1.21206 0.96547 0.89633 0.90964 0.90764 1.23216 0.94747 1.02886 0.99002 1.22903 1.04701 0.90861 1.02950 1.22996 0.96196 1.00009 1.02394 1.22406 0.98331 0.93996 0.96241 1.22983 0.98756 0.97963 0.97511 1.22918 0.99779 0.97867 0.98079 1.22695 1.02081 0.94814 0.95912 0.93135 0.96857 0.96630 0.92668 0.93788 0.95538 0.91847 0.84571 0.88196 0.89341 0.88602 0.89068 0.88842 0.89792 0.90505 0.91849 0.90671 0.91918 0.91675 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.28 5.37 -26.74 -0.14 -2.42 16 11 C 0.06 1.06 5.48 -3.83 -0.02 1.04 16 12 N -0.68 -9.91 6.06 -106.73 -0.65 -10.56 16 13 C 0.13 1.56 1.95 -67.71 -0.13 1.43 16 14 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 15 C -0.18 -2.04 4.93 -90.58 -0.45 -2.49 16 16 C -0.18 -1.74 9.65 -26.73 -0.26 -2.00 16 17 C -0.18 -2.05 10.18 -26.69 -0.27 -2.32 16 18 C -0.09 -0.98 3.26 -89.81 -0.29 -1.27 16 19 C -0.13 -1.25 5.77 -25.82 -0.15 -1.40 16 20 C -0.15 -1.38 8.09 -25.83 -0.21 -1.59 16 21 C -0.12 -1.31 7.44 -25.92 -0.19 -1.50 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.03 0.47 7.94 -51.93 -0.41 0.06 16 28 H 0.06 1.16 8.13 -51.93 -0.42 0.73 16 29 H 0.34 4.74 8.33 -39.29 -0.33 4.41 16 30 H 0.10 1.16 8.00 -51.93 -0.42 0.74 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.89 6.50 -51.93 -0.34 0.55 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.72 7.77 -51.93 -0.40 0.32 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -29.63 327.83 -10.40 -40.03 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.74 Total: 1.14 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -2.67 Total: -25.85 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.09 Total: -37.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.63 -10.40 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325109739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.747 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds