Wall clock time and date at job start Sun Mar 29 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48495 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47001 * 299.99472 * 3 2 1 6 6 H 1.48497 * 109.47322 * 59.99391 * 3 2 1 7 7 C 1.37869 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47674 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47484 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47278 * 179.97438 * 11 10 9 13 13 C 1.46909 * 111.00203 * 184.05621 * 12 11 10 14 14 H 1.08999 * 109.47028 * 324.85222 * 13 12 11 15 15 C 1.53002 * 109.46889 * 84.85252 * 13 12 11 16 16 C 1.53001 * 117.49672 * 185.38146 * 15 13 12 17 17 C 1.52997 * 60.03266 * 107.47234 * 16 15 13 18 18 C 1.52995 * 109.46876 * 204.85346 * 13 12 11 19 19 C 1.53786 * 113.61080 * 159.13861 * 18 13 12 20 20 C 1.53959 * 87.01591 * 220.04594 * 19 18 13 21 21 C 1.53780 * 113.61703 * 61.52928 * 18 13 12 22 22 H 0.97000 * 120.00359 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47155 * 59.99212 * 9 7 2 24 24 H 1.09007 * 109.46598 * 299.99607 * 9 7 2 25 25 H 1.09004 * 109.47125 * 59.99392 * 10 9 7 26 26 H 1.09004 * 109.47019 * 300.00133 * 10 9 7 27 27 H 1.09004 * 109.47237 * 59.99704 * 11 10 9 28 28 H 1.08999 * 109.47505 * 299.99771 * 11 10 9 29 29 H 1.00903 * 111.00061 * 308.00633 * 12 11 10 30 30 H 1.08992 * 115.56328 * 39.68825 * 15 13 12 31 31 H 1.09003 * 117.49837 * 214.98177 * 16 15 13 32 32 H 1.09003 * 117.49567 * 359.96974 * 16 15 13 33 33 H 1.09007 * 117.49420 * 107.49734 * 17 16 15 34 34 H 1.08996 * 117.50052 * 252.51687 * 17 16 15 35 35 H 1.08998 * 112.85213 * 290.32719 * 18 13 12 36 36 H 1.09000 * 113.61623 * 334.56002 * 19 18 13 37 37 H 1.08996 * 113.61632 * 105.46895 * 19 18 13 38 38 H 1.09002 * 113.53366 * 270.80782 * 20 19 18 39 39 H 1.09003 * 113.66576 * 139.93943 * 20 19 18 40 40 H 1.08994 * 113.61670 * 254.52401 * 21 18 13 41 41 H 1.08999 * 113.61659 * 25.34812 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4350 -6.1035 0.0006 13 6 1.7373 -7.3928 -0.0959 14 1 0.7953 -7.3377 0.4497 15 6 1.4576 -7.7126 -1.5657 16 6 0.6232 -8.9580 -1.8713 17 6 0.0158 -7.5664 -2.0586 18 6 2.6127 -8.4927 0.5078 19 6 1.8261 -9.7468 0.9245 20 6 2.7281 -9.8001 2.1710 21 6 2.9225 -8.2843 1.9996 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 2.8721 -3.6042 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8534 -5.0450 -0.8886 28 1 0.8541 -5.0446 0.8914 29 1 3.1104 -6.0015 -0.7422 30 1 2.2562 -7.4584 -2.2625 31 1 0.8729 -9.5234 -2.7691 32 1 0.2739 -9.5498 -1.0251 33 1 -0.1340 -7.2160 -3.0799 34 1 -0.7328 -7.2424 -1.3357 35 1 3.4943 -8.7107 -0.0949 36 1 0.7785 -9.5496 1.1519 37 1 1.9620 -10.5918 0.2496 38 1 3.6412 -10.3769 2.0232 39 1 2.1977 -10.0720 3.0837 40 1 3.9422 -7.9505 2.1913 41 1 2.1760 -7.6854 2.5211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325109739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:36 Heat of formation + Delta-G solvation = 1.782356 kcal Electronic energy + Delta-G solvation = -16828.595631 eV Core-core repulsion = 14322.022146 eV Total energy + Delta-G solvation = -2506.573485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53022 -37.94517 -36.83600 -35.14712 -32.94392 -29.43290 -27.15560 -26.32476 -24.50559 -23.70699 -23.10786 -22.11138 -21.11236 -20.13412 -18.48397 -16.95825 -16.68230 -16.45998 -16.38783 -15.87281 -15.12907 -14.97250 -14.48653 -14.13955 -13.70336 -13.47670 -13.23721 -13.09162 -12.77792 -12.64561 -12.50297 -12.39526 -12.26339 -12.15177 -11.72598 -11.50248 -11.46288 -11.36042 -11.19424 -11.15020 -10.89703 -10.56503 -10.53624 -9.22489 -8.20629 -6.31867 1.39589 1.40090 1.53801 2.40732 2.87220 3.12429 3.21243 3.62271 3.92092 3.99229 4.01188 4.10897 4.15704 4.21190 4.30123 4.40594 4.41891 4.62649 4.73504 4.77322 4.79654 4.94668 4.98051 5.00772 5.02660 5.06281 5.11373 5.15735 5.22866 5.25200 5.27586 5.30768 5.49933 5.52455 5.73710 5.74897 5.85288 6.13929 6.27997 6.55058 6.85246 7.37561 8.91599 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.004310 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.394120 B = 6495.514789 C = 7025.492209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.077 3.923 12 N -0.678 5.678 13 C 0.130 3.870 14 H 0.061 0.939 15 C -0.186 4.186 16 C -0.153 4.153 17 C -0.195 4.195 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.126 4.126 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.053 0.947 29 H 0.342 0.658 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 -21.154 -0.936 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.052 4.052 12 N -0.307 5.307 13 C 0.020 3.980 14 H 0.079 0.921 15 C -0.206 4.206 16 C -0.191 4.191 17 C -0.232 4.232 18 C -0.107 4.107 19 C -0.164 4.164 20 C -0.178 4.178 21 C -0.164 4.164 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.003 -21.054 -0.232 21.433 hybrid contribution -0.352 1.342 -0.992 1.706 sum 3.651 -19.712 -1.225 20.085 Atomic orbital electron populations 1.70110 1.07838 1.27711 1.51832 1.26002 0.95786 1.03435 0.94690 0.85377 0.79067 0.78637 0.77839 1.18579 1.20253 1.20297 1.21728 0.93533 0.92400 1.50362 0.92253 1.18964 0.94417 0.93217 0.94597 1.21379 0.97981 0.93083 1.00582 1.21774 0.94096 0.90222 0.99101 1.60634 1.16716 1.00929 1.52426 1.21206 0.96165 0.88804 0.91792 0.92054 1.23139 0.94713 1.04604 0.98141 1.22974 1.02374 0.90000 1.03734 1.23020 0.96069 1.01962 1.02169 1.22408 0.98511 0.94095 0.95735 1.22944 0.98461 0.97423 0.97618 1.22895 1.00328 0.96191 0.98370 1.22701 1.01155 0.96264 0.96253 0.92770 0.99224 0.99209 0.92981 0.93182 0.96040 0.92805 0.83967 0.88067 0.87772 0.87712 0.89056 0.89897 0.89223 0.90654 0.90303 0.89468 0.91399 0.92305 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.41 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.96 5.37 30.59 0.16 -3.79 16 11 C 0.08 2.77 5.48 86.30 0.47 3.24 16 12 N -0.68 -19.53 6.06 -491.57 -2.98 -22.51 16 13 C 0.13 3.10 1.95 44.91 0.09 3.19 16 14 H 0.06 1.63 7.49 -2.39 -0.02 1.61 16 15 C -0.19 -4.01 4.93 -10.77 -0.05 -4.07 16 16 C -0.15 -2.68 9.65 30.59 0.30 -2.39 16 17 C -0.20 -4.34 10.18 30.62 0.31 -4.03 16 18 C -0.09 -1.76 3.26 -10.27 -0.03 -1.79 16 19 C -0.13 -2.05 5.77 31.18 0.18 -1.87 16 20 C -0.14 -2.30 8.09 31.18 0.25 -2.05 16 21 C -0.13 -2.69 7.44 31.12 0.23 -2.46 16 22 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 25 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.02 0.79 7.94 -2.38 -0.02 0.77 16 28 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 29 H 0.34 9.31 8.33 -89.69 -0.75 8.56 16 30 H 0.10 2.18 8.00 -2.39 -0.02 2.16 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.66 6.50 -2.39 -0.02 1.65 16 33 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.26 7.77 -2.39 -0.02 1.24 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -63.63 327.83 2.30 -61.33 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.22 Total: 17.52 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 2.75 Total: -45.69 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.70 Total: -80.29 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -63.63 2.30 -61.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325109739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.108 kcal (2) G-P(sol) polarization free energy of solvation -63.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds