Wall clock time and date at job start Sun Mar 29 2020 21:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00455 * 2 1 4 4 H 1.48500 * 109.46844 * 270.00462 * 3 2 1 5 5 H 1.48507 * 109.46762 * 29.99927 * 3 2 1 6 6 H 1.48498 * 109.47403 * 150.00024 * 3 2 1 7 7 C 1.37880 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99578 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00299 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46951 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46673 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99682 * 185.31557 * 12 11 10 14 14 H 1.09004 * 109.46971 * 33.31100 * 13 12 11 15 15 C 1.53007 * 109.47046 * 273.31279 * 13 12 11 16 16 C 1.52992 * 117.49819 * 243.59652 * 15 13 12 17 17 C 1.53001 * 117.49851 * 174.97210 * 15 13 12 18 18 C 1.52995 * 109.47293 * 153.31082 * 13 12 11 19 19 C 1.53773 * 113.61684 * 299.99988 * 18 13 12 20 20 C 1.53778 * 87.08409 * 139.97761 * 19 18 13 21 21 C 1.53778 * 87.08143 * 334.56994 * 20 19 18 22 22 H 0.96996 * 119.99201 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47243 * 59.99904 * 9 7 2 24 24 H 1.08997 * 109.46923 * 299.99735 * 9 7 2 25 25 H 1.09005 * 109.47005 * 60.00298 * 10 9 7 26 26 H 1.08999 * 109.47125 * 300.00445 * 10 9 7 27 27 H 1.09001 * 109.46418 * 60.00202 * 11 10 9 28 28 H 1.08997 * 109.47178 * 299.99777 * 11 10 9 29 29 H 1.00894 * 110.99816 * 61.36115 * 12 11 10 30 30 H 1.08996 * 115.54737 * 29.30630 * 15 13 12 31 31 H 1.09001 * 117.49780 * 359.97438 * 16 15 13 32 32 H 1.09005 * 117.50058 * 145.02156 * 16 15 13 33 33 H 1.09002 * 117.49642 * 214.98092 * 17 15 13 34 34 H 1.09000 * 117.50131 * 0.02562 * 17 15 13 35 35 H 1.09005 * 112.90772 * 168.74767 * 18 13 12 36 36 H 1.09000 * 113.61869 * 254.52519 * 19 18 13 37 37 H 1.09002 * 113.61349 * 25.42856 * 19 18 13 38 38 H 1.08997 * 113.61326 * 89.11515 * 20 19 18 39 39 H 1.09001 * 113.62045 * 220.02436 * 20 19 18 40 40 H 1.09001 * 113.61674 * 270.87941 * 21 20 19 41 41 H 1.09001 * 113.69719 * 139.98998 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9872 0.0001 12 7 2.4347 -6.1038 0.0007 13 6 1.7389 -7.3913 -0.1257 14 1 0.8526 -7.2657 -0.7477 15 6 1.3226 -7.8844 1.2616 16 6 1.9456 -9.1883 1.7642 17 6 0.4775 -9.1577 1.3346 18 6 2.6743 -8.4153 -0.7715 19 6 3.1529 -8.0126 -2.1763 20 6 4.5315 -8.5665 -1.7798 21 6 4.1384 -8.2827 -0.3204 22 1 -0.4849 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8718 -3.6045 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 0.8532 -5.0450 -0.8897 28 1 0.8538 -5.0446 0.8903 29 1 3.0128 -6.0847 0.8274 30 1 1.1232 -7.1052 1.9972 31 1 2.6517 -9.6950 1.1063 32 1 2.1564 -9.2671 2.8307 33 1 -0.2777 -9.2163 2.1185 34 1 0.2183 -9.6444 0.3943 35 1 2.2909 -9.4342 -0.7163 36 1 2.6719 -8.5721 -2.9786 37 1 3.1475 -6.9361 -2.3474 38 1 4.6560 -9.6266 -2.0001 39 1 5.3645 -7.9589 -2.1335 40 1 4.4026 -7.2801 0.0160 41 1 4.4526 -9.0595 0.3768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325109740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:38 Heat of formation + Delta-G solvation = 25.910742 kcal Electronic energy + Delta-G solvation = -16949.809990 eV Core-core repulsion = 14444.282790 eV Total energy + Delta-G solvation = -2505.527200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90060 -36.72288 -35.48504 -33.22291 -31.08896 -27.85636 -25.69033 -25.37294 -23.65162 -22.39284 -22.18714 -20.39963 -19.99291 -18.67522 -16.34387 -16.32754 -15.62530 -15.15283 -14.55864 -14.43921 -14.08668 -13.83320 -13.17875 -12.49337 -12.32791 -12.13722 -12.02350 -11.60002 -11.47771 -11.42214 -11.21143 -10.86054 -10.62549 -10.53672 -10.47787 -10.37484 -10.25504 -10.06025 -9.77792 -9.63886 -9.27909 -9.01308 -8.31089 -8.05522 -5.96441 -3.98284 3.34495 3.40384 3.44113 3.71125 4.43387 4.52974 4.55727 4.73878 4.84628 4.89804 4.94515 4.99313 5.06036 5.35461 5.39407 5.54320 5.63026 5.70800 5.74247 5.79480 5.82306 5.90990 5.98700 6.02590 6.03651 6.05449 6.16156 6.24754 6.38757 6.42731 6.68510 6.77782 6.85771 7.19313 7.44219 7.70268 7.73145 7.88504 8.04542 8.48008 9.09115 9.65564 11.15075 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.004435 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.619812 B = 6312.483511 C = 6828.412602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.059 3.941 12 N -0.678 5.678 13 C 0.126 3.874 14 H 0.078 0.922 15 C -0.179 4.179 16 C -0.181 4.181 17 C -0.180 4.180 18 C -0.103 4.103 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.128 4.128 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.013 0.987 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.338 0.662 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -19.595 0.349 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.307 5.307 13 C 0.015 3.985 14 H 0.096 0.904 15 C -0.199 4.199 16 C -0.218 4.218 17 C -0.217 4.217 18 C -0.122 4.122 19 C -0.165 4.165 20 C -0.182 4.182 21 C -0.165 4.165 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.157 0.843 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.595 -19.404 -0.333 19.944 hybrid contribution -0.119 0.850 1.017 1.331 sum 4.477 -18.554 0.685 19.098 Atomic orbital electron populations 1.69972 1.06063 1.26498 1.51135 1.25030 0.94836 0.99235 0.95423 0.86604 0.79843 0.83515 0.78098 1.20664 1.21279 1.19894 1.21267 0.93043 0.91091 1.50204 0.92706 1.19067 0.94049 0.91447 0.97033 1.21595 0.99096 0.92989 1.00610 1.22153 0.94069 0.90928 0.99782 1.60652 1.23332 1.01240 1.45488 1.20986 0.95647 0.89604 0.92261 0.90414 1.23216 1.04767 0.91717 1.00199 1.23129 0.96114 1.01254 1.01256 1.22885 0.94059 1.01861 1.02930 1.22582 0.95120 0.97704 0.96767 1.22864 0.95766 1.02341 0.95568 1.22770 0.97850 1.00141 0.97413 1.22895 0.95492 1.02332 0.95814 0.93081 0.96651 0.96895 0.93784 0.92660 0.91646 0.95865 0.84327 0.88108 0.87910 0.89489 0.89238 0.88924 0.89898 0.92773 0.88622 0.91229 0.91780 0.88783 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.19 5.46 -26.73 -0.15 -2.34 16 11 C 0.06 1.02 5.53 -3.82 -0.02 1.00 16 12 N -0.68 -9.54 4.64 -106.72 -0.49 -10.03 16 13 C 0.13 1.53 2.37 -67.71 -0.16 1.37 16 14 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 15 C -0.18 -2.03 5.64 -90.62 -0.51 -2.54 16 16 C -0.18 -1.75 9.33 -26.73 -0.25 -2.00 16 17 C -0.18 -1.78 9.94 -26.73 -0.27 -2.04 16 18 C -0.10 -1.10 2.50 -89.81 -0.22 -1.32 16 19 C -0.13 -1.44 7.53 -25.92 -0.20 -1.64 16 20 C -0.14 -1.47 8.08 -25.92 -0.21 -1.68 16 21 C -0.13 -1.34 6.74 -25.92 -0.17 -1.51 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.16 7.92 -51.93 -0.41 0.75 16 28 H 0.02 0.41 7.97 -51.93 -0.41 -0.01 16 29 H 0.34 4.61 7.61 -39.29 -0.30 4.31 16 30 H 0.10 1.27 7.97 -51.93 -0.41 0.85 16 31 H 0.10 0.95 4.84 -51.93 -0.25 0.69 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.86 8.04 -51.93 -0.42 0.45 16 35 H 0.08 0.82 6.65 -51.93 -0.35 0.48 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.27 7.71 -51.93 -0.40 0.87 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.10 6.36 -51.93 -0.33 0.77 16 41 H 0.05 0.52 7.33 -51.93 -0.38 0.14 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -29.28 320.87 -10.06 -39.34 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.41 Total: 1.57 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.71 Total: -26.01 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.24 Total: -36.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.28 -10.06 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325109740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.249 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds