Wall clock time and date at job start Sun Mar 29 2020 21:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00455 * 2 1 4 4 H 1.48500 * 109.46844 * 270.00462 * 3 2 1 5 5 H 1.48507 * 109.46762 * 29.99927 * 3 2 1 6 6 H 1.48498 * 109.47403 * 150.00024 * 3 2 1 7 7 C 1.37880 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99578 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00299 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46951 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46673 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99682 * 185.31557 * 12 11 10 14 14 H 1.09004 * 109.46971 * 33.31100 * 13 12 11 15 15 C 1.53007 * 109.47046 * 273.31279 * 13 12 11 16 16 C 1.52992 * 117.49819 * 243.59652 * 15 13 12 17 17 C 1.53001 * 117.49851 * 174.97210 * 15 13 12 18 18 C 1.52995 * 109.47293 * 153.31082 * 13 12 11 19 19 C 1.53773 * 113.61684 * 299.99988 * 18 13 12 20 20 C 1.53778 * 87.08409 * 139.97761 * 19 18 13 21 21 C 1.53778 * 87.08143 * 334.56994 * 20 19 18 22 22 H 0.96996 * 119.99201 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47243 * 59.99904 * 9 7 2 24 24 H 1.08997 * 109.46923 * 299.99735 * 9 7 2 25 25 H 1.09005 * 109.47005 * 60.00298 * 10 9 7 26 26 H 1.08999 * 109.47125 * 300.00445 * 10 9 7 27 27 H 1.09001 * 109.46418 * 60.00202 * 11 10 9 28 28 H 1.08997 * 109.47178 * 299.99777 * 11 10 9 29 29 H 1.00894 * 110.99816 * 61.36115 * 12 11 10 30 30 H 1.08996 * 115.54737 * 29.30630 * 15 13 12 31 31 H 1.09001 * 117.49780 * 359.97438 * 16 15 13 32 32 H 1.09005 * 117.50058 * 145.02156 * 16 15 13 33 33 H 1.09002 * 117.49642 * 214.98092 * 17 15 13 34 34 H 1.09000 * 117.50131 * 0.02562 * 17 15 13 35 35 H 1.09005 * 112.90772 * 168.74767 * 18 13 12 36 36 H 1.09000 * 113.61869 * 254.52519 * 19 18 13 37 37 H 1.09002 * 113.61349 * 25.42856 * 19 18 13 38 38 H 1.08997 * 113.61326 * 89.11515 * 20 19 18 39 39 H 1.09001 * 113.62045 * 220.02436 * 20 19 18 40 40 H 1.09001 * 113.61674 * 270.87941 * 21 20 19 41 41 H 1.09001 * 113.69719 * 139.98998 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9872 0.0001 12 7 2.4347 -6.1038 0.0007 13 6 1.7389 -7.3913 -0.1257 14 1 0.8526 -7.2657 -0.7477 15 6 1.3226 -7.8844 1.2616 16 6 1.9456 -9.1883 1.7642 17 6 0.4775 -9.1577 1.3346 18 6 2.6743 -8.4153 -0.7715 19 6 3.1529 -8.0126 -2.1763 20 6 4.5315 -8.5665 -1.7798 21 6 4.1384 -8.2827 -0.3204 22 1 -0.4849 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8718 -3.6045 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 0.8532 -5.0450 -0.8897 28 1 0.8538 -5.0446 0.8903 29 1 3.0128 -6.0847 0.8274 30 1 1.1232 -7.1052 1.9972 31 1 2.6517 -9.6950 1.1063 32 1 2.1564 -9.2671 2.8307 33 1 -0.2777 -9.2163 2.1185 34 1 0.2183 -9.6444 0.3943 35 1 2.2909 -9.4342 -0.7163 36 1 2.6719 -8.5721 -2.9786 37 1 3.1475 -6.9361 -2.3474 38 1 4.6560 -9.6266 -2.0001 39 1 5.3645 -7.9589 -2.1335 40 1 4.4026 -7.2801 0.0160 41 1 4.4526 -9.0595 0.3768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325109740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:38 Heat of formation + Delta-G solvation = 10.742090 kcal Electronic energy + Delta-G solvation = -16950.467752 eV Core-core repulsion = 14444.282790 eV Total energy + Delta-G solvation = -2506.184962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81897 -37.61656 -36.92250 -35.14490 -32.88126 -29.28771 -27.15233 -26.41277 -24.70987 -23.94859 -23.06407 -21.94096 -21.13112 -19.62276 -18.49628 -17.23575 -16.72914 -16.55528 -16.27764 -15.49542 -15.40026 -14.93904 -14.47018 -14.17152 -13.86078 -13.35169 -13.18108 -13.01849 -12.83865 -12.73214 -12.43542 -12.30542 -12.25758 -12.05886 -11.60371 -11.42849 -11.37806 -11.26087 -11.15161 -11.01799 -10.90684 -10.63943 -10.55553 -9.23161 -8.20376 -6.31540 1.39718 1.41447 1.52622 2.40934 2.86693 3.12722 3.34133 3.67317 3.86854 3.98394 4.06186 4.10009 4.15957 4.21302 4.24736 4.41099 4.49007 4.72002 4.77567 4.79891 4.82719 4.94959 4.98780 5.03140 5.03897 5.12177 5.15093 5.21101 5.24462 5.25742 5.28651 5.38648 5.51572 5.56153 5.75525 5.83173 5.86088 6.15690 6.28859 6.55174 6.85488 7.37803 8.91692 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.004435 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.619812 B = 6312.483511 C = 6828.412602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.089 4.089 11 C 0.075 3.925 12 N -0.673 5.673 13 C 0.128 3.872 14 H 0.063 0.937 15 C -0.197 4.197 16 C -0.166 4.166 17 C -0.175 4.175 18 C -0.095 4.095 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.126 4.126 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.011 1.011 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.018 0.982 29 H 0.343 0.657 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 -20.790 0.576 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.127 4.127 11 C -0.054 4.054 12 N -0.303 5.303 13 C 0.018 3.982 14 H 0.082 0.918 15 C -0.216 4.216 16 C -0.203 4.203 17 C -0.212 4.212 18 C -0.114 4.114 19 C -0.172 4.172 20 C -0.176 4.176 21 C -0.163 4.163 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.162 0.838 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.952 -20.620 -0.104 21.462 hybrid contribution -0.578 1.192 0.939 1.623 sum 5.374 -19.429 0.834 20.175 Atomic orbital electron populations 1.70106 1.07847 1.27761 1.51789 1.26002 0.95779 1.03422 0.94683 0.85432 0.78660 0.78323 0.78544 1.19723 1.20641 1.18714 1.21702 0.93521 0.92421 1.50447 0.92275 1.18973 0.94446 0.93258 0.94578 1.21336 0.97885 0.92921 1.00551 1.21809 0.93902 0.90518 0.99189 1.60579 1.22645 1.01292 1.45783 1.20968 0.95407 0.88911 0.92916 0.91845 1.23048 1.07093 0.92260 0.99240 1.23186 0.96054 0.99179 1.01848 1.22969 0.94487 1.00271 1.03509 1.22571 0.94930 0.97811 0.96044 1.22837 0.97089 1.00979 0.96318 1.22772 0.96818 1.01039 0.96924 1.22848 0.95076 1.02035 0.96372 0.92777 0.99201 0.99265 0.93316 0.93000 0.92466 0.96333 0.83779 0.89736 0.86920 0.88805 0.88810 0.88100 0.88180 0.92001 0.91140 0.89430 0.92239 0.90278 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.79 5.46 30.60 0.17 -3.62 16 11 C 0.08 2.65 5.53 86.30 0.48 3.13 16 12 N -0.67 -18.89 4.64 -491.55 -2.28 -21.17 16 13 C 0.13 3.03 2.37 44.92 0.11 3.13 16 14 H 0.06 1.68 7.69 -2.39 -0.02 1.66 16 15 C -0.20 -4.23 5.64 -10.79 -0.06 -4.29 16 16 C -0.17 -2.79 9.33 30.59 0.29 -2.50 16 17 C -0.17 -3.11 9.94 30.60 0.30 -2.80 16 18 C -0.09 -1.85 2.50 -10.27 -0.03 -1.87 16 19 C -0.13 -2.88 7.53 31.12 0.23 -2.65 16 20 C -0.14 -2.53 8.08 31.12 0.25 -2.28 16 21 C -0.13 -2.36 6.74 31.12 0.21 -2.15 16 22 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.11 7.92 -2.39 -0.02 2.09 16 28 H 0.02 0.67 7.97 -2.39 -0.02 0.65 16 29 H 0.34 9.19 7.61 -89.70 -0.68 8.51 16 30 H 0.08 2.11 7.97 -2.39 -0.02 2.09 16 31 H 0.11 1.68 4.84 -2.39 -0.01 1.67 16 32 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.64 8.04 -2.39 -0.02 1.62 16 35 H 0.10 1.67 6.65 -2.38 -0.02 1.65 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.88 7.71 -2.39 -0.02 1.86 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.74 6.36 -2.39 -0.02 1.73 16 41 H 0.07 1.12 7.33 -2.39 -0.02 1.10 16 Total: -1.00 -63.15 320.87 3.12 -60.03 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.30 Total: 17.44 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 2.79 Total: -45.60 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.99 Total: -78.97 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.15 3.12 -60.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325109740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.774 kcal (2) G-P(sol) polarization free energy of solvation -63.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds