Wall clock time and date at job start Sun Mar 29 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46948 * 2 1 4 4 C 1.52998 * 109.46977 * 120.00082 * 2 1 3 5 5 H 1.08996 * 113.07164 * 311.85606 * 4 2 1 6 6 N 1.48119 * 113.80588 * 83.71900 * 4 2 1 7 7 C 1.46900 * 111.00203 * 251.27265 * 6 4 2 8 8 C 1.50700 * 109.47383 * 189.99848 * 7 6 4 9 9 H 1.07994 * 119.99711 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99694 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00545 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99534 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47363 * 59.99998 * 12 10 8 14 14 H 1.48504 * 109.47097 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47532 * 299.99752 * 12 10 8 16 16 C 1.48121 * 90.92008 * 138.31085 * 6 4 2 17 17 C 1.53076 * 113.79722 * 180.02562 * 4 2 1 18 18 C 1.53480 * 115.25060 * 105.82371 * 17 4 2 19 19 C 1.55085 * 103.96409 * 206.60057 * 18 17 4 20 20 C 1.54960 * 102.87189 * 37.21305 * 19 18 17 21 21 C 1.53087 * 115.49030 * 339.45614 * 17 4 2 22 22 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47002 * 299.99784 * 1 2 3 24 24 H 1.08992 * 109.47214 * 59.99877 * 1 2 3 25 25 H 1.09002 * 109.46931 * 239.99672 * 2 1 3 26 26 H 1.08996 * 109.47278 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47381 * 299.99793 * 3 2 1 28 28 H 1.09002 * 109.47572 * 60.00065 * 3 2 1 29 29 H 1.09002 * 109.46758 * 309.99911 * 7 6 4 30 30 H 1.09002 * 109.46872 * 69.99426 * 7 6 4 31 31 H 0.97000 * 120.00814 * 180.02562 * 11 10 8 32 32 H 1.08998 * 113.80492 * 221.68581 * 16 6 4 33 33 H 1.09000 * 113.79848 * 90.17943 * 16 6 4 34 34 H 1.09001 * 110.53238 * 325.21777 * 18 17 4 35 35 H 1.08998 * 110.53359 * 87.98146 * 18 17 4 36 36 H 1.09005 * 110.73112 * 278.87290 * 19 18 17 37 37 H 1.08994 * 110.89035 * 155.63036 * 19 18 17 38 38 H 1.09000 * 110.48289 * 203.81038 * 20 19 18 39 39 H 1.09001 * 110.58989 * 81.24100 * 20 19 18 40 40 H 1.09000 * 110.10176 * 249.15152 * 21 17 4 41 41 H 1.09000 * 110.10084 * 10.76016 * 21 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5515 -0.3873 2.1646 6 7 2.0995 -2.1944 1.1066 7 6 1.0561 -2.8438 1.9113 8 6 1.2962 -4.3313 1.9394 9 1 2.1393 -4.7521 1.4118 10 6 0.4388 -5.1548 2.6376 11 7 -0.5882 -4.6424 3.2796 12 14 0.7360 -6.9987 2.6718 13 1 2.0664 -7.2747 3.2713 14 1 -0.3187 -7.6552 3.4853 15 1 0.6971 -7.5322 1.2865 16 6 3.4069 -2.2328 1.8018 17 6 3.5664 -0.7785 1.3496 18 6 4.1901 0.1648 2.3873 19 6 5.6168 0.4316 1.8408 20 6 5.3923 0.5009 0.3091 21 6 4.3212 -0.5777 0.0329 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.0848 -2.4519 2.9280 30 1 0.0795 -2.6415 1.4714 31 1 -1.1912 -5.2217 3.7712 32 1 4.1258 -2.9158 1.3494 33 1 3.3271 -2.3508 2.8825 34 1 3.6241 1.0943 2.4480 35 1 4.2388 -0.3187 3.3630 36 1 6.2874 -0.3891 2.0957 37 1 6.0064 1.3775 2.2169 38 1 6.3148 0.2672 -0.2225 39 1 5.0254 1.4857 0.0196 40 1 4.7978 -1.5095 -0.2716 41 1 3.6364 -0.2356 -0.7430 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334672711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:15 Heat of formation + Delta-G solvation = 7.669639 kcal Electronic energy + Delta-G solvation = -18090.049625 eV Core-core repulsion = 15583.731431 eV Total energy + Delta-G solvation = -2506.318194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50616 -35.80495 -34.33674 -32.64980 -29.30709 -28.59496 -26.76000 -25.87774 -25.12087 -23.16152 -20.94650 -20.37630 -19.56685 -17.51277 -16.33564 -15.77439 -15.34259 -14.59499 -14.30931 -14.05111 -13.61818 -13.03789 -12.99319 -12.40473 -12.24527 -11.93573 -11.83259 -11.69777 -11.49334 -11.20754 -10.92491 -10.85569 -10.82539 -10.81076 -10.42676 -10.34012 -10.29820 -10.25477 -9.93115 -9.42819 -9.25143 -9.01969 -8.43047 -7.59378 -6.00698 -4.02026 3.34338 3.38049 3.41413 4.43745 4.64410 4.75023 4.87322 5.12161 5.30130 5.33803 5.34803 5.47143 5.64573 5.69490 5.74222 5.78924 5.87192 5.95518 5.98572 6.01987 6.11283 6.14298 6.22535 6.28923 6.31681 6.39118 6.41854 6.45987 6.54408 6.59625 6.61954 6.68851 6.80884 6.90724 7.01418 7.33749 7.73725 7.96929 8.24240 8.52591 9.05851 9.62151 11.10432 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.007149 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.003439 B = 3915.530341 C = 4513.535460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.152 4.152 4 C 0.043 3.957 5 H 0.066 0.934 6 N -0.471 5.471 7 C 0.164 3.836 8 C -0.508 4.508 9 H 0.060 0.940 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.031 3.969 17 C -0.087 4.087 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.101 4.101 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.048 0.952 29 H -0.006 1.006 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 11.887 -4.437 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.210 4.210 4 C -0.067 4.067 5 H 0.084 0.916 6 N -0.193 5.193 7 C 0.037 3.963 8 C -0.547 4.547 9 H 0.078 0.922 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.098 4.098 17 C -0.088 4.088 18 C -0.152 4.152 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.138 4.138 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.012 0.988 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.578 11.498 -4.961 15.179 hybrid contribution -0.122 -0.855 1.104 1.402 sum 8.456 10.643 -3.857 14.130 Atomic orbital electron populations 1.21808 0.95605 1.02403 1.00395 1.20892 0.95315 0.94719 0.98309 1.22002 1.01815 0.96282 1.00859 1.23341 0.93746 0.92729 0.96840 0.91604 1.68506 1.02947 1.03284 1.44581 1.20157 0.91000 0.94515 0.90583 1.21088 1.11386 0.91469 1.30709 0.92174 1.24980 0.95144 0.98903 0.95505 1.69945 1.15149 1.35412 1.33337 0.86586 0.77701 0.85205 0.78065 1.20323 1.21348 1.20183 1.23633 0.94514 0.93768 0.97849 1.22439 0.94899 0.95979 0.95460 1.22337 0.95438 0.99136 0.98275 1.22489 0.97156 1.00744 0.95576 1.22474 0.98656 0.99096 0.96078 1.21969 0.96651 0.98468 0.96684 0.91822 0.93437 0.93606 0.90436 0.91652 0.93362 0.93288 0.98847 0.95126 0.92922 0.90883 0.91947 0.91720 0.91851 0.91738 0.92330 0.92267 0.91953 0.91750 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.19 37.16 0.34 -1.98 16 2 C -0.07 -1.15 2.23 -90.62 -0.20 -1.35 16 3 C -0.15 -1.92 8.61 37.15 0.32 -1.60 16 4 C 0.04 0.78 2.30 -67.00 -0.15 0.62 16 5 H 0.07 1.28 7.78 -51.93 -0.40 0.87 16 6 N -0.47 -10.30 6.05 -235.70 -1.43 -11.72 16 7 C 0.16 4.35 4.58 -4.98 -0.02 4.32 16 8 C -0.51 -14.62 8.84 -34.44 -0.30 -14.92 16 9 H 0.06 1.72 7.80 -52.49 -0.41 1.31 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 12 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.03 0.61 6.67 -3.08 -0.02 0.59 16 17 C -0.09 -1.37 0.64 -154.21 -0.10 -1.47 16 18 C -0.11 -1.55 6.21 -25.38 -0.16 -1.71 16 19 C -0.12 -1.41 6.91 -24.59 -0.17 -1.58 16 20 C -0.13 -1.42 6.45 -24.91 -0.16 -1.58 16 21 C -0.10 -1.39 5.31 -25.90 -0.14 -1.53 16 22 H 0.06 1.19 7.49 -51.93 -0.39 0.80 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.27 6.78 -51.93 -0.35 0.92 16 26 H 0.06 0.78 4.06 -51.93 -0.21 0.57 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H -0.01 -0.18 7.70 -51.93 -0.40 -0.58 16 30 H 0.03 0.88 7.49 -51.93 -0.39 0.49 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.41 7.85 -51.93 -0.41 1.00 16 33 H 0.06 1.30 7.58 -51.93 -0.39 0.91 16 34 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 35 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.65 6.81 -51.93 -0.35 0.30 16 40 H 0.06 0.94 7.73 -51.93 -0.40 0.53 16 41 H 0.08 1.07 4.52 -51.93 -0.23 0.84 16 LS Contribution 308.43 15.07 4.65 4.65 Total: -1.00 -29.60 308.43 -9.19 -38.79 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.27 Total: -1.69 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -0.86 Total: -20.66 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.69 Total: -38.14 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.60 -9.19 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334672711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.464 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds