Wall clock time and date at job start Sun Mar 29 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46948 * 2 1 4 4 C 1.52998 * 109.46977 * 120.00082 * 2 1 3 5 5 H 1.08996 * 113.07164 * 311.85606 * 4 2 1 6 6 N 1.48119 * 113.80588 * 83.71900 * 4 2 1 7 7 C 1.46900 * 111.00203 * 251.27265 * 6 4 2 8 8 C 1.50700 * 109.47383 * 189.99848 * 7 6 4 9 9 H 1.07994 * 119.99711 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99694 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00545 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99534 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47363 * 59.99998 * 12 10 8 14 14 H 1.48504 * 109.47097 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47532 * 299.99752 * 12 10 8 16 16 C 1.48121 * 90.92008 * 138.31085 * 6 4 2 17 17 C 1.53076 * 113.79722 * 180.02562 * 4 2 1 18 18 C 1.53480 * 115.25060 * 105.82371 * 17 4 2 19 19 C 1.55085 * 103.96409 * 206.60057 * 18 17 4 20 20 C 1.54960 * 102.87189 * 37.21305 * 19 18 17 21 21 C 1.53087 * 115.49030 * 339.45614 * 17 4 2 22 22 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47002 * 299.99784 * 1 2 3 24 24 H 1.08992 * 109.47214 * 59.99877 * 1 2 3 25 25 H 1.09002 * 109.46931 * 239.99672 * 2 1 3 26 26 H 1.08996 * 109.47278 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47381 * 299.99793 * 3 2 1 28 28 H 1.09002 * 109.47572 * 60.00065 * 3 2 1 29 29 H 1.09002 * 109.46758 * 309.99911 * 7 6 4 30 30 H 1.09002 * 109.46872 * 69.99426 * 7 6 4 31 31 H 0.97000 * 120.00814 * 180.02562 * 11 10 8 32 32 H 1.08998 * 113.80492 * 221.68581 * 16 6 4 33 33 H 1.09000 * 113.79848 * 90.17943 * 16 6 4 34 34 H 1.09001 * 110.53238 * 325.21777 * 18 17 4 35 35 H 1.08998 * 110.53359 * 87.98146 * 18 17 4 36 36 H 1.09005 * 110.73112 * 278.87290 * 19 18 17 37 37 H 1.08994 * 110.89035 * 155.63036 * 19 18 17 38 38 H 1.09000 * 110.48289 * 203.81038 * 20 19 18 39 39 H 1.09001 * 110.58989 * 81.24100 * 20 19 18 40 40 H 1.09000 * 110.10176 * 249.15152 * 21 17 4 41 41 H 1.09000 * 110.10084 * 10.76016 * 21 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5515 -0.3873 2.1646 6 7 2.0995 -2.1944 1.1066 7 6 1.0561 -2.8438 1.9113 8 6 1.2962 -4.3313 1.9394 9 1 2.1393 -4.7521 1.4118 10 6 0.4388 -5.1548 2.6376 11 7 -0.5882 -4.6424 3.2796 12 14 0.7360 -6.9987 2.6718 13 1 2.0664 -7.2747 3.2713 14 1 -0.3187 -7.6552 3.4853 15 1 0.6971 -7.5322 1.2865 16 6 3.4069 -2.2328 1.8018 17 6 3.5664 -0.7785 1.3496 18 6 4.1901 0.1648 2.3873 19 6 5.6168 0.4316 1.8408 20 6 5.3923 0.5009 0.3091 21 6 4.3212 -0.5777 0.0329 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.0848 -2.4519 2.9280 30 1 0.0795 -2.6415 1.4714 31 1 -1.1912 -5.2217 3.7712 32 1 4.1258 -2.9158 1.3494 33 1 3.3271 -2.3508 2.8825 34 1 3.6241 1.0943 2.4480 35 1 4.2388 -0.3187 3.3630 36 1 6.2874 -0.3891 2.0957 37 1 6.0064 1.3775 2.2169 38 1 6.3148 0.2672 -0.2225 39 1 5.0254 1.4857 0.0196 40 1 4.7978 -1.5095 -0.2716 41 1 3.6364 -0.2356 -0.7430 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334672711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:15 Heat of formation + Delta-G solvation = -10.761535 kcal Electronic energy + Delta-G solvation = -18090.848860 eV Core-core repulsion = 15583.731431 eV Total energy + Delta-G solvation = -2507.117429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.94431 -37.12370 -35.71960 -34.75242 -31.07396 -29.66729 -28.15303 -27.44605 -26.61261 -24.93106 -22.18086 -21.98994 -20.79046 -18.91854 -18.45321 -17.14911 -16.62122 -16.43458 -15.96556 -15.48633 -14.95124 -14.53558 -14.23273 -14.04437 -13.75697 -13.49141 -13.27066 -13.03057 -12.93988 -12.83094 -12.69665 -12.32335 -12.19829 -11.94648 -11.87923 -11.84722 -11.63736 -11.40762 -11.23830 -11.16480 -10.81512 -10.72058 -10.65371 -9.41519 -8.25758 -6.36889 1.35377 1.39207 1.47336 2.35804 3.06295 3.20154 3.44716 3.67946 3.98570 4.09125 4.14521 4.35471 4.40538 4.44207 4.52653 4.61716 4.70891 4.77395 4.83452 4.84077 4.86600 4.91575 4.96928 5.02840 5.07007 5.12278 5.17308 5.21198 5.25087 5.32215 5.34479 5.40804 5.44825 5.50827 5.53664 5.61964 5.72190 5.84090 6.16579 6.51355 6.79388 7.33177 8.85678 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.007149 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.003439 B = 3915.530341 C = 4513.535460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.143 4.143 4 C 0.041 3.959 5 H 0.046 0.954 6 N -0.484 5.484 7 C 0.185 3.815 8 C -0.530 4.530 9 H 0.057 0.943 10 C 0.002 3.998 11 N -0.934 5.934 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.268 1.268 16 C 0.023 3.977 17 C -0.067 4.067 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.101 4.101 22 H 0.024 0.976 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.051 0.949 29 H -0.038 1.038 30 H -0.001 1.001 31 H 0.265 0.735 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.722 13.048 -5.504 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.069 4.069 5 H 0.064 0.936 6 N -0.206 5.206 7 C 0.057 3.943 8 C -0.568 4.568 9 H 0.075 0.925 10 C -0.196 4.196 11 N -0.574 5.574 12 Si 0.794 3.206 13 H -0.192 1.192 14 H -0.204 1.204 15 H -0.193 1.193 16 C -0.106 4.106 17 C -0.068 4.068 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.139 4.139 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.070 0.930 29 H -0.021 1.021 30 H 0.017 0.983 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.471 12.675 -6.036 17.514 hybrid contribution -0.752 -1.209 1.447 2.030 sum 9.719 11.466 -4.589 15.716 Atomic orbital electron populations 1.21788 0.96240 1.00230 1.01728 1.20905 0.94808 0.96726 0.96469 1.21935 1.02485 0.93562 1.02076 1.23440 0.95865 0.90174 0.97400 0.93644 1.68461 1.02533 1.05959 1.43696 1.19748 0.91141 0.94257 0.89127 1.21402 1.11565 0.92733 1.31095 0.92460 1.25944 0.94619 1.04315 0.94737 1.70079 1.16008 1.37430 1.33871 0.85434 0.78102 0.78586 0.78497 1.19202 1.20450 1.19313 1.23663 0.93331 0.97123 0.96448 1.22318 0.93500 0.93425 0.97543 1.22343 0.97218 0.98697 0.96990 1.22481 0.95257 1.01926 0.95701 1.22450 0.98326 0.98742 0.95866 1.21999 0.97330 0.99373 0.95152 0.95713 0.93484 0.90846 0.90914 0.90476 0.91249 0.93001 1.02058 0.98336 0.92599 0.90843 0.94093 0.90564 0.93006 0.91923 0.89978 0.90575 0.90206 0.92580 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.19 71.98 0.66 -3.96 16 2 C -0.07 -2.15 2.23 -10.79 -0.02 -2.18 16 3 C -0.14 -3.19 8.61 71.98 0.62 -2.57 16 4 C 0.04 1.50 2.30 44.70 0.10 1.60 16 5 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 6 N -0.48 -22.24 6.05 -899.63 -5.44 -27.68 16 7 C 0.18 10.46 4.58 85.56 0.39 10.85 16 8 C -0.53 -31.76 8.84 25.60 0.23 -31.53 16 9 H 0.06 3.38 7.80 -2.91 -0.02 3.36 16 10 C 0.00 0.12 5.46 84.66 0.46 0.58 16 11 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 12 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 16 C 0.02 0.95 6.67 86.11 0.57 1.52 16 17 C -0.07 -2.09 0.64 -51.89 -0.03 -2.13 16 18 C -0.11 -2.94 6.21 31.47 0.20 -2.75 16 19 C -0.12 -2.29 6.91 31.98 0.22 -2.07 16 20 C -0.12 -2.17 6.45 31.77 0.20 -1.97 16 21 C -0.10 -2.59 5.31 31.13 0.17 -2.42 16 22 H 0.02 0.96 7.49 -2.38 -0.02 0.94 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.32 6.78 -2.39 -0.02 2.30 16 26 H 0.08 1.54 4.06 -2.39 -0.01 1.54 16 27 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H -0.04 -2.35 7.70 -2.39 -0.02 -2.37 16 30 H 0.00 -0.09 7.49 -2.39 -0.02 -0.11 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 32 H 0.07 2.92 7.85 -2.39 -0.02 2.90 16 33 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 34 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.05 1.45 7.80 -2.39 -0.02 1.43 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.26 6.81 -2.39 -0.02 1.25 16 40 H 0.06 1.54 7.73 -2.39 -0.02 1.52 16 41 H 0.08 2.03 4.52 -2.39 -0.01 2.02 16 Total: -1.00 -66.97 308.43 1.61 -65.36 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.97 Total: 9.44 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.77 Total: -37.01 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -5.16 Total: -85.70 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -66.97 1.61 -65.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334672711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.599 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds