Wall clock time and date at job start Sun Mar 29 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 110.27286 * 2 1 4 4 C 1.54335 * 110.30704 * 237.81786 * 2 1 3 5 5 N 1.48444 * 104.58129 * 216.32972 * 4 2 1 6 6 C 1.46900 * 111.00036 * 159.16720 * 5 4 2 7 7 C 1.53003 * 109.46901 * 54.09416 * 6 5 4 8 8 C 1.50705 * 109.46949 * 179.97438 * 7 6 5 9 9 H 1.07993 * 119.99993 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99517 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00403 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99781 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47216 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47076 * 300.00576 * 12 10 8 15 15 H 1.48505 * 109.46651 * 60.00201 * 12 10 8 16 16 C 1.48428 * 104.61967 * 39.37927 * 5 4 2 17 17 H 1.09000 * 111.90218 * 83.20687 * 16 5 4 18 18 C 1.53770 * 108.80743 * 207.33156 * 16 5 4 19 19 C 1.56360 * 105.68204 * 112.98798 * 18 16 5 20 20 C 1.54823 * 104.54586 * 336.40672 * 19 18 16 21 21 C 1.54059 * 110.30503 * 122.07639 * 2 1 3 22 22 H 1.08992 * 112.94300 * 357.39760 * 21 2 1 23 23 H 1.09001 * 109.47453 * 297.92065 * 1 2 3 24 24 H 1.08999 * 109.47224 * 57.92119 * 1 2 3 25 25 H 1.09004 * 109.47119 * 177.92391 * 1 2 3 26 26 H 1.08995 * 109.47450 * 190.13933 * 3 2 1 27 27 H 1.09003 * 109.46763 * 310.13963 * 3 2 1 28 28 H 1.09006 * 109.46786 * 70.13386 * 3 2 1 29 29 H 1.08994 * 110.41636 * 97.55473 * 4 2 1 30 30 H 1.09001 * 110.41086 * 335.10273 * 4 2 1 31 31 H 1.08999 * 109.47232 * 294.09919 * 6 5 4 32 32 H 1.09004 * 109.47341 * 174.09211 * 6 5 4 33 33 H 1.08999 * 109.46767 * 60.00218 * 7 6 5 34 34 H 1.08997 * 109.47206 * 300.00274 * 7 6 5 35 35 H 0.97003 * 119.99437 * 359.97438 * 11 10 8 36 36 H 1.08997 * 110.00300 * 232.47779 * 18 16 5 37 37 H 1.09004 * 109.99862 * 353.83062 * 18 16 5 38 38 H 1.09006 * 110.51768 * 217.51450 * 19 18 16 39 39 H 1.09000 * 110.22548 * 95.15760 * 19 18 16 40 40 H 1.09005 * 110.71203 * 279.41530 * 20 19 18 41 41 H 1.08993 * 110.86788 * 156.22951 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0655 -0.7709 -1.2250 5 7 3.2807 -1.4640 -0.7284 6 6 3.6273 -2.6016 -1.5907 7 6 3.7498 -2.1248 -3.0394 8 6 4.1061 -3.2918 -3.9239 9 1 4.2321 -4.2752 -3.4957 10 6 4.2701 -3.1040 -5.2799 11 7 4.1161 -1.9065 -5.8014 12 14 4.7110 -4.5507 -6.3765 13 1 4.8287 -4.0881 -7.7827 14 1 6.0052 -5.1299 -5.9353 15 1 3.6486 -5.5842 -6.2833 16 6 2.9194 -1.9218 0.6365 17 1 2.3731 -2.8649 0.6177 18 6 4.2000 -2.0185 1.4822 19 6 4.0703 -0.9069 2.5741 20 6 3.0890 0.1241 1.9648 21 6 2.0645 -0.7673 1.2243 22 1 1.2716 -1.1251 1.8809 23 1 -0.3634 0.4812 0.9080 24 1 -0.3633 0.5458 -0.8707 25 1 -0.3633 -1.0270 -0.0372 26 1 3.1349 1.4256 -0.1809 27 1 1.5645 2.0056 -0.7857 28 1 1.8583 1.8970 0.9666 29 1 2.3234 -0.0790 -2.0267 30 1 1.3284 -1.4961 -1.5699 31 1 2.8474 -3.3601 -1.5226 32 1 4.5772 -3.0270 -1.2667 33 1 4.5297 -1.3664 -3.1074 34 1 2.8000 -1.6994 -3.3634 35 1 3.8868 -1.1555 -5.2320 36 1 4.2691 -3.0039 1.9428 37 1 5.0742 -1.8365 0.8570 38 1 5.0388 -0.4448 2.7658 39 1 3.6606 -1.3270 3.4927 40 1 3.6056 0.7810 1.2649 41 1 2.6005 0.7046 2.7473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336337869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:07 Heat of formation + Delta-G solvation = -19.145693 kcal Electronic energy + Delta-G solvation = -17925.550347 eV Core-core repulsion = 15418.069353 eV Total energy + Delta-G solvation = -2507.480994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25755 -35.22900 -34.60447 -32.96435 -29.47403 -28.06944 -27.21670 -26.60074 -25.33424 -23.16144 -20.82147 -20.27983 -19.48670 -18.46494 -16.57337 -15.96475 -15.48406 -14.34713 -14.03698 -13.85458 -13.70425 -13.44297 -13.20218 -13.01854 -12.58035 -12.22139 -11.92503 -11.56545 -11.48697 -11.37758 -10.99187 -10.84966 -10.79856 -10.64254 -10.51400 -10.27059 -10.11043 -10.08758 -10.01671 -9.97194 -9.55690 -8.54768 -8.29618 -7.87336 -6.33533 -4.01958 3.45153 3.47420 3.66107 4.43750 4.55472 4.60213 4.64341 4.93360 5.14970 5.21704 5.26911 5.44422 5.51601 5.59419 5.65065 5.69026 5.72080 5.81974 5.88102 5.92407 5.99344 6.01888 6.07653 6.12818 6.14734 6.20027 6.28600 6.30287 6.36777 6.39656 6.51598 6.57811 6.67123 6.84719 7.34250 7.41331 7.59881 7.76535 8.27397 8.49244 8.91669 9.70268 11.07506 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.006069 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.319222 B = 4612.487412 C = 5076.797681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.133 4.133 4 C 0.048 3.952 5 N -0.504 5.504 6 C 0.060 3.940 7 C 0.013 3.987 8 C -0.603 4.603 9 H 0.047 0.953 10 C 0.015 3.985 11 N -0.913 5.913 12 Si 1.069 2.931 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.289 1.289 16 C 0.057 3.943 17 H 0.050 0.950 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.084 4.084 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.008 0.992 35 H 0.269 0.731 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 4.117 15.711 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.189 4.189 4 C -0.080 4.080 5 N -0.228 5.228 6 C -0.068 4.068 7 C -0.024 4.024 8 C -0.642 4.642 9 H 0.065 0.935 10 C -0.188 4.188 11 N -0.549 5.549 12 Si 0.897 3.103 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.215 1.215 16 C -0.052 4.052 17 H 0.068 0.932 18 C -0.148 4.148 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.103 4.103 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.004 4.023 14.125 15.223 hybrid contribution -1.060 -0.351 1.517 1.883 sum -5.064 3.672 15.642 16.846 Atomic orbital electron populations 1.21878 0.94707 1.01498 1.01429 1.21294 0.94693 0.95809 0.94992 1.21953 1.01635 0.94561 1.00800 1.23112 0.91421 0.97197 0.96285 1.65481 1.31322 1.24792 1.01159 1.22324 0.98968 0.90388 0.95094 1.19250 0.96357 0.97138 0.89668 1.22016 1.52279 0.95169 0.94695 0.93503 1.25826 0.94537 1.01825 0.96635 1.70775 1.44613 1.00202 1.39303 0.83552 0.76371 0.74305 0.76073 1.20744 1.21434 1.21541 1.23221 0.94988 0.96021 0.90980 0.93219 1.22451 0.98312 0.97655 0.96419 1.22670 0.99206 0.96404 0.97563 1.22730 0.96434 0.97477 0.99039 1.22702 0.96740 0.95106 0.95754 0.90308 0.92837 0.92588 0.92914 0.91391 0.93247 0.92856 0.90186 0.94160 0.96128 0.91855 0.96749 0.97416 0.92072 0.92576 0.90425 0.92083 0.92517 0.89530 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.32 37.15 0.31 -1.34 16 2 C -0.07 -0.92 1.01 -153.26 -0.15 -1.08 16 3 C -0.13 -1.66 7.08 37.16 0.26 -1.40 16 4 C 0.05 0.84 4.16 -2.27 -0.01 0.83 16 5 N -0.50 -9.37 4.90 -221.37 -1.09 -10.45 16 6 C 0.06 1.32 4.94 -3.82 -0.02 1.30 16 7 C 0.01 0.35 3.98 -27.88 -0.11 0.24 16 8 C -0.60 -17.66 9.11 -34.44 -0.31 -17.97 16 9 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 10 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 11 N -0.91 -28.54 13.65 55.43 0.76 -27.79 16 12 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.06 0.88 3.07 -65.29 -0.20 0.68 16 17 H 0.05 0.80 7.84 -51.93 -0.41 0.40 16 18 C -0.11 -1.55 6.65 -24.53 -0.16 -1.71 16 19 C -0.12 -1.41 6.88 -23.97 -0.16 -1.58 16 20 C -0.12 -1.42 4.96 -24.89 -0.12 -1.55 16 21 C -0.08 -1.10 3.47 -88.01 -0.31 -1.41 16 22 H 0.08 0.95 7.85 -51.93 -0.41 0.55 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.07 0.94 6.64 -51.93 -0.34 0.59 16 27 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.05 0.57 7.21 -51.93 -0.37 0.20 16 29 H 0.08 1.53 7.39 -51.93 -0.38 1.14 16 30 H 0.04 0.75 7.69 -51.93 -0.40 0.35 16 31 H 0.02 0.46 7.90 -51.93 -0.41 0.05 16 32 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.01 0.40 8.01 -51.93 -0.42 -0.01 16 34 H 0.01 0.21 6.69 -51.93 -0.35 -0.14 16 35 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.23 7.88 -51.93 -0.41 0.82 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.12 5.25 -51.93 -0.27 0.85 16 41 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -30.54 307.34 -9.34 -39.88 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.47 Total: -2.36 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -1.09 Total: -24.61 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.33 Total: -38.24 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.54 -9.34 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336337869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.730 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds