Wall clock time and date at job start Sun Mar 29 2020 22:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 110.27286 * 2 1 4 4 C 1.54335 * 110.30704 * 237.81786 * 2 1 3 5 5 N 1.48444 * 104.58129 * 216.32972 * 4 2 1 6 6 C 1.46900 * 111.00036 * 159.16720 * 5 4 2 7 7 C 1.53003 * 109.46901 * 54.09416 * 6 5 4 8 8 C 1.50705 * 109.46949 * 179.97438 * 7 6 5 9 9 H 1.07993 * 119.99993 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99517 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00403 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99781 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47216 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47076 * 300.00576 * 12 10 8 15 15 H 1.48505 * 109.46651 * 60.00201 * 12 10 8 16 16 C 1.48428 * 104.61967 * 39.37927 * 5 4 2 17 17 H 1.09000 * 111.90218 * 83.20687 * 16 5 4 18 18 C 1.53770 * 108.80743 * 207.33156 * 16 5 4 19 19 C 1.56360 * 105.68204 * 112.98798 * 18 16 5 20 20 C 1.54823 * 104.54586 * 336.40672 * 19 18 16 21 21 C 1.54059 * 110.30503 * 122.07639 * 2 1 3 22 22 H 1.08992 * 112.94300 * 357.39760 * 21 2 1 23 23 H 1.09001 * 109.47453 * 297.92065 * 1 2 3 24 24 H 1.08999 * 109.47224 * 57.92119 * 1 2 3 25 25 H 1.09004 * 109.47119 * 177.92391 * 1 2 3 26 26 H 1.08995 * 109.47450 * 190.13933 * 3 2 1 27 27 H 1.09003 * 109.46763 * 310.13963 * 3 2 1 28 28 H 1.09006 * 109.46786 * 70.13386 * 3 2 1 29 29 H 1.08994 * 110.41636 * 97.55473 * 4 2 1 30 30 H 1.09001 * 110.41086 * 335.10273 * 4 2 1 31 31 H 1.08999 * 109.47232 * 294.09919 * 6 5 4 32 32 H 1.09004 * 109.47341 * 174.09211 * 6 5 4 33 33 H 1.08999 * 109.46767 * 60.00218 * 7 6 5 34 34 H 1.08997 * 109.47206 * 300.00274 * 7 6 5 35 35 H 0.97003 * 119.99437 * 359.97438 * 11 10 8 36 36 H 1.08997 * 110.00300 * 232.47779 * 18 16 5 37 37 H 1.09004 * 109.99862 * 353.83062 * 18 16 5 38 38 H 1.09006 * 110.51768 * 217.51450 * 19 18 16 39 39 H 1.09000 * 110.22548 * 95.15760 * 19 18 16 40 40 H 1.09005 * 110.71203 * 279.41530 * 20 19 18 41 41 H 1.08993 * 110.86788 * 156.22951 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0655 -0.7709 -1.2250 5 7 3.2807 -1.4640 -0.7284 6 6 3.6273 -2.6016 -1.5907 7 6 3.7498 -2.1248 -3.0394 8 6 4.1061 -3.2918 -3.9239 9 1 4.2321 -4.2752 -3.4957 10 6 4.2701 -3.1040 -5.2799 11 7 4.1161 -1.9065 -5.8014 12 14 4.7110 -4.5507 -6.3765 13 1 4.8287 -4.0881 -7.7827 14 1 6.0052 -5.1299 -5.9353 15 1 3.6486 -5.5842 -6.2833 16 6 2.9194 -1.9218 0.6365 17 1 2.3731 -2.8649 0.6177 18 6 4.2000 -2.0185 1.4822 19 6 4.0703 -0.9069 2.5741 20 6 3.0890 0.1241 1.9648 21 6 2.0645 -0.7673 1.2243 22 1 1.2716 -1.1251 1.8809 23 1 -0.3634 0.4812 0.9080 24 1 -0.3633 0.5458 -0.8707 25 1 -0.3633 -1.0270 -0.0372 26 1 3.1349 1.4256 -0.1809 27 1 1.5645 2.0056 -0.7857 28 1 1.8583 1.8970 0.9666 29 1 2.3234 -0.0790 -2.0267 30 1 1.3284 -1.4961 -1.5699 31 1 2.8474 -3.3601 -1.5226 32 1 4.5772 -3.0270 -1.2667 33 1 4.5297 -1.3664 -3.1074 34 1 2.8000 -1.6994 -3.3634 35 1 3.8868 -1.1555 -5.2320 36 1 4.2691 -3.0039 1.9428 37 1 5.0742 -1.8365 0.8570 38 1 5.0388 -0.4448 2.7658 39 1 3.6606 -1.3270 3.4927 40 1 3.6056 0.7810 1.2649 41 1 2.6005 0.7046 2.7473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336337869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:06 Heat of formation + Delta-G solvation = -37.202653 kcal Electronic energy + Delta-G solvation = -17926.333355 eV Core-core repulsion = 15418.069353 eV Total energy + Delta-G solvation = -2508.264002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.49088 -36.92544 -35.70740 -34.98476 -31.30921 -29.12252 -28.39758 -27.74668 -27.03025 -25.11984 -22.47457 -21.43983 -20.81059 -19.74322 -18.72263 -17.20057 -16.74321 -15.76774 -15.63934 -15.51007 -15.28685 -14.68019 -14.55599 -14.31125 -14.06606 -13.73547 -13.56876 -13.04457 -12.74684 -12.56950 -12.46980 -12.37955 -12.02064 -11.96252 -11.92102 -11.78333 -11.65404 -11.49427 -11.33211 -11.09928 -11.04110 -10.75063 -10.58363 -9.43555 -8.74621 -6.45020 1.49391 1.58538 1.78253 2.53111 3.06972 3.11466 3.42070 3.50565 3.79470 4.04338 4.14701 4.22481 4.25985 4.32033 4.44990 4.49106 4.58829 4.61245 4.71993 4.73318 4.77621 4.81968 4.89421 4.90912 4.98916 5.06436 5.11636 5.15344 5.16683 5.22138 5.26051 5.29435 5.35954 5.40538 5.47627 5.66549 5.82421 6.06708 6.11008 6.19445 6.51835 7.37848 8.66208 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.006069 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.319222 B = 4612.487412 C = 5076.797681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.128 4.128 4 C 0.045 3.955 5 N -0.510 5.510 6 C 0.077 3.923 7 C 0.022 3.978 8 C -0.624 4.624 9 H 0.049 0.951 10 C -0.037 4.037 11 N -0.934 5.934 12 Si 1.120 2.880 13 H -0.281 1.281 14 H -0.268 1.268 15 H -0.268 1.268 16 C 0.049 3.951 17 H 0.043 0.957 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.077 4.077 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.015 0.985 32 H 0.059 0.941 33 H -0.013 1.013 34 H -0.010 1.010 35 H 0.254 0.746 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 3.809 17.830 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.083 4.083 5 N -0.234 5.234 6 C -0.051 4.051 7 C -0.015 4.015 8 C -0.662 4.662 9 H 0.068 0.932 10 C -0.235 4.235 11 N -0.571 5.571 12 Si 0.940 3.060 13 H -0.206 1.206 14 H -0.193 1.193 15 H -0.193 1.193 16 C -0.059 4.059 17 H 0.061 0.939 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.096 4.096 22 H 0.120 0.880 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.005 0.995 34 H 0.008 0.992 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.612 3.727 16.282 17.328 hybrid contribution -0.872 -0.235 0.862 1.249 sum -5.485 3.493 17.144 18.336 Atomic orbital electron populations 1.21855 0.92979 1.01572 1.02733 1.21298 0.96015 0.95922 0.93023 1.21918 1.00373 0.93872 1.02339 1.23122 0.90701 0.96682 0.97800 1.65443 1.32328 1.23356 1.02295 1.21960 0.98682 0.91303 0.93153 1.19085 0.94245 0.95706 0.92474 1.22447 1.52181 0.95941 0.95606 0.93229 1.27523 0.93517 1.03640 0.98785 1.70916 1.46344 1.00736 1.39143 0.82916 0.77584 0.71386 0.74088 1.20590 1.19260 1.19347 1.23414 0.96477 0.96876 0.89171 0.93894 1.22463 0.96304 0.99489 0.96760 1.22654 0.99802 0.95338 0.97279 1.22728 0.96039 0.97304 0.99338 1.22757 0.97190 0.94008 0.95600 0.88047 0.90092 0.92842 0.93374 0.93180 0.93292 0.90075 0.92893 0.95972 0.96702 0.92238 0.99501 0.99169 0.93689 0.91495 0.92880 0.91410 0.90344 0.90885 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.32 71.98 0.60 -2.33 16 2 C -0.06 -1.62 1.01 -51.37 -0.05 -1.68 16 3 C -0.13 -3.03 7.08 71.98 0.51 -2.52 16 4 C 0.05 1.66 4.16 86.46 0.36 2.01 16 5 N -0.51 -19.61 4.90 -854.29 -4.19 -23.80 16 6 C 0.08 3.55 4.94 86.30 0.43 3.98 16 7 C 0.02 1.24 3.98 29.85 0.12 1.36 16 8 C -0.62 -37.51 9.11 25.60 0.23 -37.28 16 9 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 10 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 11 N -0.93 -60.14 13.65 21.45 0.29 -59.84 16 12 Si 1.12 51.67 29.90 68.60 2.05 53.72 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 16 C 0.05 1.49 3.07 45.64 0.14 1.63 16 17 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 18 C -0.11 -3.01 6.65 32.02 0.21 -2.80 16 19 C -0.11 -2.30 6.88 32.39 0.22 -2.08 16 20 C -0.12 -2.40 4.96 31.79 0.16 -2.24 16 21 C -0.08 -1.83 3.47 -9.10 -0.03 -1.86 16 22 H 0.10 2.03 7.85 -2.39 -0.02 2.01 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.09 8.10 -2.38 -0.02 1.08 16 26 H 0.05 1.37 6.64 -2.39 -0.02 1.35 16 27 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.08 1.48 7.21 -2.38 -0.02 1.46 16 29 H 0.05 2.18 7.39 -2.39 -0.02 2.16 16 30 H 0.02 0.87 7.69 -2.39 -0.02 0.85 16 31 H 0.01 0.69 7.90 -2.39 -0.02 0.67 16 32 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 33 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 34 H -0.01 -0.58 6.69 -2.39 -0.02 -0.60 16 35 H 0.25 16.67 7.22 -92.71 -0.67 16.00 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.68 7.88 -2.39 -0.02 1.66 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.73 5.25 -2.38 -0.01 1.72 16 41 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -68.05 307.34 2.57 -65.47 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.06 Total: 10.04 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 3.36 Total: -45.59 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -3.90 Total: -83.65 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -68.05 2.57 -65.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336337869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.269 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds