Wall clock time and date at job start Sun Mar 29 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.73471 * 2 1 4 4 C 1.55811 * 110.67429 * 123.12395 * 2 1 3 5 5 N 1.50179 * 106.44507 * 124.55021 * 4 2 1 6 6 C 1.46897 * 111.00475 * 145.09076 * 5 4 2 7 7 C 1.52999 * 109.46854 * 290.12765 * 6 5 4 8 8 C 1.50706 * 109.47255 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99162 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00110 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00154 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99844 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47194 * 59.99765 * 12 10 8 14 14 H 1.48501 * 109.47012 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47179 * 299.99868 * 12 10 8 16 16 C 1.43883 * 102.88672 * 26.29557 * 5 4 2 17 17 H 1.09002 * 108.26960 * 65.37315 * 16 5 4 18 18 C 1.49904 * 127.92673 * 197.30240 * 16 5 4 19 19 C 1.55864 * 104.24173 * 149.59829 * 18 16 5 20 20 C 1.56200 * 105.85223 * 353.54593 * 19 18 16 21 21 C 1.51624 * 110.69565 * 236.81571 * 2 1 3 22 22 H 1.08998 * 111.47664 * 326.42777 * 21 2 1 23 23 H 1.09002 * 109.46976 * 298.33283 * 1 2 3 24 24 H 1.09003 * 109.47076 * 58.33098 * 1 2 3 25 25 H 1.08997 * 109.47513 * 178.33443 * 1 2 3 26 26 H 1.09005 * 109.46676 * 181.66612 * 3 2 1 27 27 H 1.08995 * 109.47531 * 301.66548 * 3 2 1 28 28 H 1.08995 * 109.47433 * 61.66964 * 3 2 1 29 29 H 1.09002 * 110.07347 * 5.28471 * 4 2 1 30 30 H 1.09001 * 110.06536 * 243.80706 * 4 2 1 31 31 H 1.09004 * 109.46633 * 50.12180 * 6 5 4 32 32 H 1.08995 * 109.47599 * 170.12260 * 6 5 4 33 33 H 1.09004 * 109.47022 * 299.99176 * 7 6 5 34 34 H 1.09000 * 109.47631 * 59.99814 * 7 6 5 35 35 H 0.96998 * 119.99791 * 180.02562 * 11 10 8 36 36 H 1.08997 * 110.47865 * 268.28226 * 18 16 5 37 37 H 1.09000 * 110.48344 * 30.90545 * 18 16 5 38 38 H 1.09004 * 110.17414 * 234.45500 * 19 18 16 39 39 H 1.08994 * 110.23670 * 112.67522 * 19 18 16 40 40 H 1.08996 * 110.92643 * 216.63246 * 20 19 18 41 41 H 1.08996 * 110.92545 * 92.97128 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0717 1.4309 0.0000 4 6 2.0801 -0.7966 1.2209 5 7 2.9945 -1.8499 0.6642 6 6 4.1317 -2.0884 1.5629 7 6 5.0602 -0.8725 1.5443 8 6 6.2266 -1.1168 2.4668 9 1 6.2981 -2.0463 3.0121 10 6 7.2016 -0.1534 2.6153 11 7 7.1141 0.9786 1.9516 12 14 8.6470 -0.4561 3.7593 13 1 9.3946 -1.6563 3.3056 14 1 9.5482 0.7240 3.7411 15 1 8.1475 -0.6769 5.1402 16 6 3.4318 -1.2711 -0.5784 17 1 4.0248 -0.3848 -0.3526 18 6 4.0661 -1.9657 -1.7456 19 6 3.6093 -1.1333 -2.9816 20 6 2.5849 -0.0875 -2.4368 21 6 2.0659 -0.7763 -1.1871 22 1 1.4163 -1.6136 -1.4425 23 1 -0.3633 0.4877 0.9046 24 1 -0.3633 0.5396 -0.8747 25 1 -0.3634 -1.0272 -0.0299 26 1 3.1611 1.4069 -0.0299 27 1 1.6959 1.9617 -0.8746 28 1 1.7443 1.9434 0.9045 29 1 1.2584 -1.2635 1.7639 30 1 2.6350 -0.1312 1.8823 31 1 3.7657 -2.2506 2.5768 32 1 4.6800 -2.9694 1.2294 33 1 5.4262 -0.7103 0.5304 34 1 4.5119 0.0085 1.8780 35 1 7.8003 1.6561 2.0559 36 1 5.1522 -1.9490 -1.6550 37 1 3.7045 -2.9912 -1.8217 38 1 3.1303 -1.7817 -3.7153 39 1 4.4628 -0.6250 -3.4301 40 1 1.7800 0.0784 -3.1527 41 1 3.0814 0.8501 -2.1869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336337871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:11 Heat of formation + Delta-G solvation = -3.389070 kcal Electronic energy + Delta-G solvation = -18244.166344 eV Core-core repulsion = 15737.368609 eV Total energy + Delta-G solvation = -2506.797735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58406 -35.33621 -34.61286 -32.67040 -29.35601 -27.77591 -27.11659 -26.68093 -25.45151 -23.19172 -21.34100 -20.58363 -18.53881 -18.08205 -16.55143 -15.86251 -14.75690 -14.53722 -14.18752 -14.10116 -13.45361 -13.10589 -12.99813 -12.76868 -12.41713 -12.28900 -11.82874 -11.57067 -11.35195 -11.14461 -11.10749 -10.90529 -10.82831 -10.65998 -10.54983 -10.24622 -10.07285 -9.98186 -9.78861 -9.62906 -9.41664 -9.08725 -8.34418 -7.47476 -6.01953 -4.04400 3.31915 3.36174 3.38944 4.32446 4.44464 4.76990 4.95650 5.14350 5.25039 5.30836 5.33351 5.38752 5.68921 5.73758 5.83568 5.86186 5.93234 5.96347 6.03691 6.08287 6.16075 6.20129 6.21718 6.26672 6.35187 6.39248 6.43640 6.47031 6.55555 6.62019 6.73070 6.80030 6.87476 6.96811 7.41730 7.61829 7.76688 7.86553 8.01348 8.42831 9.01973 9.59480 11.08981 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.007075 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.102867 B = 3956.549511 C = 4193.169688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.139 4.139 4 C 0.040 3.960 5 N -0.501 5.501 6 C 0.043 3.957 7 C -0.006 4.006 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.042 3.958 17 H 0.062 0.938 18 C -0.100 4.100 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.100 4.100 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.023 0.977 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.958 -1.309 -7.423 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.088 4.088 5 N -0.223 5.223 6 C -0.085 4.085 7 C -0.044 4.044 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.068 4.068 17 H 0.080 0.920 18 C -0.138 4.138 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.119 4.119 22 H 0.097 0.903 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.120 -1.679 -7.502 13.519 hybrid contribution 1.430 0.678 0.890 1.816 sum -9.690 -1.001 -6.611 11.773 Atomic orbital electron populations 1.21795 0.94546 1.01449 1.01111 1.20913 0.94983 0.95132 0.95233 1.21880 1.01845 0.94870 1.01025 1.23791 0.96255 0.92806 0.95936 1.64631 1.16577 1.38095 1.03018 1.22444 0.90725 1.00172 0.95139 1.19652 0.94261 0.93038 0.97484 1.21141 1.06837 1.02101 1.25805 0.92732 1.25004 0.98164 0.95155 0.95960 1.69951 1.34752 1.06702 1.41945 0.86668 0.82419 0.77599 0.81393 1.20222 1.21296 1.20245 1.22187 0.95675 0.98022 0.90880 0.92010 1.21315 1.00241 0.98991 0.93270 1.22824 0.98413 0.97092 0.97213 1.21959 0.98033 0.98455 0.96511 1.22358 0.97518 0.98376 0.93647 0.90297 0.92985 0.93004 0.92624 0.91742 0.92896 0.92898 0.91143 0.92183 0.92339 0.91900 0.95852 0.96609 0.92998 0.91566 0.91780 0.92042 0.91908 0.92225 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.41 37.16 0.31 -1.29 16 2 C -0.06 -0.92 0.90 -153.70 -0.14 -1.06 16 3 C -0.14 -2.09 7.21 37.16 0.27 -1.82 16 4 C 0.04 0.69 5.82 -0.48 0.00 0.69 16 5 N -0.50 -9.56 5.59 -223.14 -1.25 -10.81 16 6 C 0.04 0.93 5.46 -3.83 -0.02 0.91 16 7 C -0.01 -0.17 3.82 -27.88 -0.11 -0.27 16 8 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 12 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 16 C 0.04 0.76 1.49 -68.40 -0.10 0.66 16 17 H 0.06 1.31 4.13 -51.93 -0.21 1.10 16 18 C -0.10 -1.63 6.72 -26.74 -0.18 -1.81 16 19 C -0.12 -1.58 6.94 -23.49 -0.16 -1.75 16 20 C -0.11 -1.51 6.04 -25.60 -0.15 -1.67 16 21 C -0.10 -1.50 2.53 -89.44 -0.23 -1.73 16 22 H 0.08 1.19 7.97 -51.93 -0.41 0.77 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.06 1.15 6.67 -51.93 -0.35 0.80 16 27 H 0.05 0.69 7.73 -51.93 -0.40 0.29 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 30 H 0.06 1.18 5.84 -51.93 -0.30 0.87 16 31 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.02 0.64 6.24 -51.93 -0.32 0.32 16 34 H 0.02 0.43 6.55 -51.93 -0.34 0.09 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 LS Contribution 304.75 15.07 4.59 4.59 Total: -1.00 -29.25 304.75 -9.14 -38.40 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.28 Total: -0.23 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -0.92 Total: -22.69 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.51 Total: -36.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.25 -9.14 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336337871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.010 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds