Wall clock time and date at job start Sun Mar 29 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.73471 * 2 1 4 4 C 1.55811 * 110.67429 * 123.12395 * 2 1 3 5 5 N 1.50179 * 106.44507 * 124.55021 * 4 2 1 6 6 C 1.46897 * 111.00475 * 145.09076 * 5 4 2 7 7 C 1.52999 * 109.46854 * 290.12765 * 6 5 4 8 8 C 1.50706 * 109.47255 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99162 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00110 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00154 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99844 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47194 * 59.99765 * 12 10 8 14 14 H 1.48501 * 109.47012 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47179 * 299.99868 * 12 10 8 16 16 C 1.43883 * 102.88672 * 26.29557 * 5 4 2 17 17 H 1.09002 * 108.26960 * 65.37315 * 16 5 4 18 18 C 1.49904 * 127.92673 * 197.30240 * 16 5 4 19 19 C 1.55864 * 104.24173 * 149.59829 * 18 16 5 20 20 C 1.56200 * 105.85223 * 353.54593 * 19 18 16 21 21 C 1.51624 * 110.69565 * 236.81571 * 2 1 3 22 22 H 1.08998 * 111.47664 * 326.42777 * 21 2 1 23 23 H 1.09002 * 109.46976 * 298.33283 * 1 2 3 24 24 H 1.09003 * 109.47076 * 58.33098 * 1 2 3 25 25 H 1.08997 * 109.47513 * 178.33443 * 1 2 3 26 26 H 1.09005 * 109.46676 * 181.66612 * 3 2 1 27 27 H 1.08995 * 109.47531 * 301.66548 * 3 2 1 28 28 H 1.08995 * 109.47433 * 61.66964 * 3 2 1 29 29 H 1.09002 * 110.07347 * 5.28471 * 4 2 1 30 30 H 1.09001 * 110.06536 * 243.80706 * 4 2 1 31 31 H 1.09004 * 109.46633 * 50.12180 * 6 5 4 32 32 H 1.08995 * 109.47599 * 170.12260 * 6 5 4 33 33 H 1.09004 * 109.47022 * 299.99176 * 7 6 5 34 34 H 1.09000 * 109.47631 * 59.99814 * 7 6 5 35 35 H 0.96998 * 119.99791 * 180.02562 * 11 10 8 36 36 H 1.08997 * 110.47865 * 268.28226 * 18 16 5 37 37 H 1.09000 * 110.48344 * 30.90545 * 18 16 5 38 38 H 1.09004 * 110.17414 * 234.45500 * 19 18 16 39 39 H 1.08994 * 110.23670 * 112.67522 * 19 18 16 40 40 H 1.08996 * 110.92643 * 216.63246 * 20 19 18 41 41 H 1.08996 * 110.92545 * 92.97128 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0717 1.4309 0.0000 4 6 2.0801 -0.7966 1.2209 5 7 2.9945 -1.8499 0.6642 6 6 4.1317 -2.0884 1.5629 7 6 5.0602 -0.8725 1.5443 8 6 6.2266 -1.1168 2.4668 9 1 6.2981 -2.0463 3.0121 10 6 7.2016 -0.1534 2.6153 11 7 7.1141 0.9786 1.9516 12 14 8.6470 -0.4561 3.7593 13 1 9.3946 -1.6563 3.3056 14 1 9.5482 0.7240 3.7411 15 1 8.1475 -0.6769 5.1402 16 6 3.4318 -1.2711 -0.5784 17 1 4.0248 -0.3848 -0.3526 18 6 4.0661 -1.9657 -1.7456 19 6 3.6093 -1.1333 -2.9816 20 6 2.5849 -0.0875 -2.4368 21 6 2.0659 -0.7763 -1.1871 22 1 1.4163 -1.6136 -1.4425 23 1 -0.3633 0.4877 0.9046 24 1 -0.3633 0.5396 -0.8747 25 1 -0.3634 -1.0272 -0.0299 26 1 3.1611 1.4069 -0.0299 27 1 1.6959 1.9617 -0.8746 28 1 1.7443 1.9434 0.9045 29 1 1.2584 -1.2635 1.7639 30 1 2.6350 -0.1312 1.8823 31 1 3.7657 -2.2506 2.5768 32 1 4.6800 -2.9694 1.2294 33 1 5.4262 -0.7103 0.5304 34 1 4.5119 0.0085 1.8780 35 1 7.8003 1.6561 2.0559 36 1 5.1522 -1.9490 -1.6550 37 1 3.7045 -2.9912 -1.8217 38 1 3.1303 -1.7817 -3.7153 39 1 4.4628 -0.6250 -3.4301 40 1 1.7800 0.0784 -3.1527 41 1 3.0814 0.8501 -2.1869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336337871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:11 Heat of formation + Delta-G solvation = -20.987588 kcal Electronic energy + Delta-G solvation = -18244.929473 eV Core-core repulsion = 15737.368609 eV Total energy + Delta-G solvation = -2507.560864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.95320 -36.89534 -35.94353 -34.72368 -31.25904 -28.95615 -28.30132 -28.10015 -27.12270 -25.02500 -23.00096 -21.82687 -20.06662 -19.35802 -18.66773 -17.26512 -16.61854 -16.11856 -15.70625 -15.54598 -14.78274 -14.53701 -14.33344 -14.29997 -14.18306 -13.50050 -13.39473 -13.14514 -12.91781 -12.68211 -12.60966 -12.48896 -12.26402 -12.05757 -11.95912 -11.89104 -11.56358 -11.46671 -11.24283 -11.19354 -11.13416 -10.73835 -10.56003 -9.15582 -8.24377 -6.36717 1.35267 1.38437 1.46411 2.36139 2.95681 3.07647 3.38725 3.70940 3.91625 4.05219 4.12305 4.17781 4.37951 4.52494 4.52786 4.60791 4.62516 4.68965 4.71497 4.81579 4.83252 4.89025 4.97235 4.97844 5.06994 5.10587 5.12291 5.13002 5.20706 5.25834 5.37232 5.42805 5.44637 5.49639 5.54844 5.68346 5.73678 5.99055 6.15016 6.37584 6.79524 7.32273 8.86249 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.007075 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.102867 B = 3956.549511 C = 4193.169688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 C -0.133 4.133 4 C 0.035 3.965 5 N -0.496 5.496 6 C 0.056 3.944 7 C 0.012 3.988 8 C -0.548 4.548 9 H 0.058 0.942 10 C 0.003 3.997 11 N -0.929 5.929 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.031 3.969 17 H 0.021 0.979 18 C -0.103 4.103 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.084 4.084 22 H 0.092 0.908 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.059 0.941 33 H -0.003 1.003 34 H -0.012 1.012 35 H 0.263 0.737 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -1.944 -8.179 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.092 4.092 5 N -0.217 5.217 6 C -0.072 4.072 7 C -0.026 4.026 8 C -0.586 4.586 9 H 0.077 0.923 10 C -0.195 4.195 11 N -0.569 5.569 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.191 1.191 16 C -0.079 4.079 17 H 0.039 0.961 18 C -0.141 4.141 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.103 4.103 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.015 0.985 34 H 0.006 0.994 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.589 -2.323 -8.260 15.235 hybrid contribution 1.889 0.898 1.131 2.378 sum -10.700 -1.425 -7.130 12.937 Atomic orbital electron populations 1.21741 0.91521 1.02431 1.02473 1.20938 0.97195 0.94132 0.93700 1.21819 0.99223 0.95787 1.02222 1.23905 0.95939 0.92349 0.97003 1.64676 1.15235 1.38864 1.02974 1.22180 0.91035 0.97981 0.95982 1.19413 0.94183 0.93715 0.95301 1.21600 1.08015 1.02508 1.26513 0.92342 1.25956 1.01242 0.94717 0.97561 1.70097 1.35837 1.07631 1.43326 0.85516 0.78518 0.77854 0.79275 1.19162 1.20647 1.19147 1.22283 0.97696 0.96794 0.91124 0.96137 1.21369 0.98596 1.00096 0.94068 1.22814 0.98705 0.97090 0.96220 1.21974 0.98719 0.97559 0.96374 1.22376 0.95282 0.98660 0.93938 0.89024 0.92286 0.91033 0.91845 0.95784 0.90428 0.92812 0.89360 0.95429 0.92270 0.92204 0.98474 0.99425 0.92805 0.94257 0.90732 0.89130 0.91914 0.88924 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 8.41 71.98 0.61 -2.02 16 2 C -0.06 -1.69 0.90 -51.66 -0.05 -1.74 16 3 C -0.13 -4.04 7.21 71.98 0.52 -3.52 16 4 C 0.04 1.24 5.82 86.63 0.50 1.75 16 5 N -0.50 -19.27 5.59 -859.89 -4.81 -24.07 16 6 C 0.06 2.56 5.46 86.30 0.47 3.03 16 7 C 0.01 0.65 3.82 29.85 0.11 0.77 16 8 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 10 C 0.00 0.21 5.46 84.65 0.46 0.67 16 11 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 12 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.03 1.15 1.49 46.08 0.07 1.21 16 17 H 0.02 0.94 4.13 -2.39 -0.01 0.93 16 18 C -0.10 -3.40 6.72 30.59 0.21 -3.19 16 19 C -0.11 -2.80 6.94 32.70 0.23 -2.57 16 20 C -0.11 -2.71 6.04 31.33 0.19 -2.52 16 21 C -0.08 -2.37 2.53 -10.03 -0.03 -2.40 16 22 H 0.09 2.43 7.97 -2.39 -0.02 2.41 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 26 H 0.02 0.90 6.67 -2.38 -0.02 0.88 16 27 H 0.08 1.93 7.73 -2.39 -0.02 1.91 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 2.75 7.75 -2.39 -0.02 2.73 16 30 H 0.03 1.14 5.84 -2.39 -0.01 1.13 16 31 H 0.06 2.64 8.09 -2.39 -0.02 2.62 16 32 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.00 -0.18 6.24 -2.39 -0.01 -0.19 16 34 H -0.01 -0.75 6.55 -2.39 -0.02 -0.76 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.57 6.71 -2.39 -0.02 1.55 16 Total: -1.00 -65.70 304.75 2.01 -63.69 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.97 Total: 13.04 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 3.53 Total: -42.60 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -4.52 Total: -81.39 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.70 2.01 -63.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336337871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.704 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds