Wall clock time and date at job start Sun Mar 29 2020 21:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99595 * 2 1 4 4 H 1.48501 * 109.47401 * 269.99611 * 3 2 1 5 5 H 1.48497 * 109.47516 * 29.99845 * 3 2 1 6 6 H 1.48503 * 109.46878 * 149.99764 * 3 2 1 7 7 C 1.37876 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99653 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46887 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.47904 * 111.00312 * 49.26868 * 11 10 9 13 13 C 1.54924 * 104.80950 * 146.24533 * 12 11 10 14 14 C 1.55184 * 101.67514 * 323.04866 * 13 12 11 15 15 C 1.47216 * 110.99800 * 170.00164 * 11 10 9 16 16 C 1.52774 * 110.03261 * 117.59396 * 15 11 10 17 17 C 1.53052 * 109.46241 * 179.13052 * 16 15 11 18 18 C 1.52996 * 109.44901 * 59.54047 * 17 16 15 19 19 C 1.53000 * 109.54339 * 299.76641 * 18 17 16 20 20 C 1.52762 * 110.05994 * 355.99808 * 15 11 10 21 21 H 0.96998 * 120.00497 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46982 * 60.00421 * 9 7 2 23 23 H 1.09002 * 109.47360 * 300.00061 * 9 7 2 24 24 H 1.08998 * 109.47151 * 60.00297 * 10 9 7 25 25 H 1.08998 * 109.47131 * 300.00572 * 10 9 7 26 26 H 1.09004 * 110.36786 * 265.07550 * 12 11 10 27 27 H 1.08995 * 110.37418 * 27.41244 * 12 11 10 28 28 H 1.09000 * 110.98519 * 81.14677 * 13 12 11 29 29 H 1.09002 * 110.98714 * 204.91664 * 13 12 11 30 30 H 1.09000 * 110.71752 * 277.13144 * 14 13 12 31 31 H 1.09002 * 110.71405 * 153.86036 * 14 13 12 32 32 H 1.09004 * 109.46908 * 299.11809 * 16 15 11 33 33 H 1.08990 * 109.47990 * 59.12998 * 16 15 11 34 34 H 1.09007 * 109.47319 * 299.55426 * 17 16 15 35 35 H 1.08996 * 109.48135 * 179.53944 * 17 16 15 36 36 H 1.09002 * 109.45740 * 179.74244 * 18 17 16 37 37 H 1.09005 * 109.45572 * 59.78775 * 18 17 16 38 38 H 1.09001 * 109.47349 * 300.24749 * 19 18 17 39 39 H 1.08991 * 109.48029 * 180.22929 * 19 18 17 40 40 H 1.09003 * 109.47435 * 300.84745 * 20 15 11 41 41 H 1.08996 * 109.47399 * 60.86024 * 20 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5108 -4.9342 0.0033 12 6 0.4659 -4.9434 -1.0434 13 6 0.4033 -6.4138 -1.5275 14 6 1.8979 -6.8271 -1.4704 15 6 2.4193 -6.0680 -0.2344 16 6 2.4196 -7.0009 0.9755 17 6 3.3509 -8.1852 0.7060 18 6 4.7680 -7.6702 0.4464 19 6 4.7613 -6.7459 -0.7728 20 6 3.8334 -5.5581 -0.5068 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8720 -3.6051 -0.8872 26 1 -0.4937 -4.6408 -0.6241 27 1 0.7464 -4.2850 -1.8655 28 1 -0.1963 -7.0224 -0.8506 29 1 0.0198 -6.4734 -2.5461 30 1 2.4218 -6.5048 -2.3702 31 1 1.9951 -7.9038 -1.3309 32 1 2.7682 -6.4571 1.8535 33 1 1.4083 -7.3668 1.1524 34 1 2.9979 -8.7336 -0.1675 35 1 3.3576 -8.8467 1.5722 36 1 5.4323 -8.5138 0.2590 37 1 5.1191 -7.1184 1.3185 38 1 4.4063 -7.2963 -1.6441 39 1 5.7719 -6.3829 -0.9592 40 1 3.8221 -4.9037 -1.3784 41 1 4.1928 -5.0033 0.3597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336511303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:14 Heat of formation + Delta-G solvation = -18.557346 kcal Electronic energy + Delta-G solvation = -17976.804494 eV Core-core repulsion = 15469.349013 eV Total energy + Delta-G solvation = -2507.455481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23885 -36.12786 -33.53102 -31.93024 -30.54414 -29.98230 -28.21165 -24.87009 -24.19040 -22.58854 -21.83044 -20.99663 -19.22123 -17.68160 -16.50814 -15.68627 -15.41420 -14.68237 -14.38295 -14.21635 -13.95259 -13.52949 -12.98821 -12.56254 -12.35898 -12.16828 -12.01252 -11.97346 -11.39976 -11.07254 -10.99790 -10.90136 -10.74708 -10.66792 -10.49606 -10.41754 -10.22509 -10.03923 -9.91109 -9.67697 -9.23349 -9.06687 -8.32627 -7.52162 -5.97338 -3.99450 3.33034 3.39280 3.42743 4.38191 4.52003 4.78820 4.89033 5.04403 5.13900 5.18304 5.28698 5.38554 5.41105 5.54298 5.65871 5.69255 5.70717 5.81751 5.84740 6.00140 6.05358 6.09456 6.15022 6.22316 6.27411 6.31835 6.35411 6.42379 6.43233 6.54682 6.59430 6.64966 6.77319 7.03019 7.61748 7.69052 7.84593 7.92433 8.11958 8.47368 9.07849 9.64032 11.14103 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033705 B = 0.006123 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.538476 B = 4572.113877 C = 5049.110914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.055 3.945 11 N -0.523 5.523 12 C 0.049 3.951 13 C -0.132 4.132 14 C -0.133 4.133 15 C 0.104 3.896 16 C -0.093 4.093 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.130 4.130 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.022 0.978 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 -16.012 -1.844 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.072 4.072 11 N -0.246 5.246 12 C -0.079 4.079 13 C -0.171 4.171 14 C -0.171 4.171 15 C 0.014 3.986 16 C -0.131 4.131 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.168 4.168 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.350 -15.915 -1.338 16.843 hybrid contribution 0.817 1.188 -0.785 1.642 sum 6.167 -14.727 -2.123 16.106 Atomic orbital electron populations 1.69970 1.06016 1.26513 1.50827 1.24990 0.94817 0.99136 0.95371 0.86613 0.79879 0.83584 0.78034 1.20741 1.21205 1.19895 1.21193 0.92949 0.91082 1.50632 0.92845 1.19204 0.94126 0.90556 0.97680 1.22539 0.97188 0.88388 0.99058 1.63665 1.12156 1.03086 1.45720 1.22971 0.96670 0.94732 0.93499 1.22747 0.96286 0.97344 1.00680 1.22935 0.96032 1.00306 0.97874 1.21473 0.91403 0.91823 0.93929 1.21394 0.99067 0.94992 0.97697 1.21649 0.95298 0.97827 1.01072 1.21520 0.96805 0.98735 0.98499 1.21554 0.99233 0.96748 0.97956 1.22077 0.94990 0.97387 1.02319 0.93045 0.96406 0.95968 0.92195 0.95376 0.90485 0.93321 0.91284 0.91598 0.91868 0.91027 0.91868 0.91925 0.92021 0.92366 0.92640 0.92087 0.92215 0.92417 0.91548 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.64 -27.88 -0.13 0.44 16 10 C 0.06 1.19 3.85 -3.82 -0.01 1.18 16 11 N -0.52 -9.79 4.95 -216.24 -1.07 -10.86 16 12 C 0.05 0.88 5.31 -2.26 -0.01 0.86 16 13 C -0.13 -1.85 7.08 -24.56 -0.17 -2.02 16 14 C -0.13 -1.77 4.72 -24.98 -0.12 -1.89 16 15 C 0.10 1.56 0.86 -131.07 -0.11 1.45 16 16 C -0.09 -1.27 5.06 -26.82 -0.14 -1.41 16 17 C -0.12 -1.32 5.70 -26.71 -0.15 -1.47 16 18 C -0.12 -1.27 5.91 -26.73 -0.16 -1.43 16 19 C -0.12 -1.37 5.71 -26.70 -0.15 -1.53 16 20 C -0.13 -1.90 3.30 -26.82 -0.09 -1.99 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.02 0.49 6.48 -51.93 -0.34 0.16 16 23 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.31 7.35 -51.93 -0.38 0.93 16 25 H 0.03 0.60 5.84 -51.93 -0.30 0.30 16 26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.05 0.94 7.03 -51.93 -0.36 0.58 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 31 H 0.07 0.84 5.81 -51.93 -0.30 0.53 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.64 6.16 -51.93 -0.32 0.32 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.67 7.11 -51.93 -0.37 0.30 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.06 6.52 -51.93 -0.34 0.72 16 41 H 0.07 1.12 6.93 -51.93 -0.36 0.76 16 LS Contribution 300.09 15.07 4.52 4.52 Total: -1.00 -29.77 300.09 -9.73 -39.50 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.24 Total: -2.11 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -1.66 Total: -21.48 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.33 Total: -37.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.77 -9.73 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336511303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.945 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds