Wall clock time and date at job start Sun Mar 29 2020 21:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99595 * 2 1 4 4 H 1.48501 * 109.47401 * 269.99611 * 3 2 1 5 5 H 1.48497 * 109.47516 * 29.99845 * 3 2 1 6 6 H 1.48503 * 109.46878 * 149.99764 * 3 2 1 7 7 C 1.37876 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99653 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46887 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.47904 * 111.00312 * 49.26868 * 11 10 9 13 13 C 1.54924 * 104.80950 * 146.24533 * 12 11 10 14 14 C 1.55184 * 101.67514 * 323.04866 * 13 12 11 15 15 C 1.47216 * 110.99800 * 170.00164 * 11 10 9 16 16 C 1.52774 * 110.03261 * 117.59396 * 15 11 10 17 17 C 1.53052 * 109.46241 * 179.13052 * 16 15 11 18 18 C 1.52996 * 109.44901 * 59.54047 * 17 16 15 19 19 C 1.53000 * 109.54339 * 299.76641 * 18 17 16 20 20 C 1.52762 * 110.05994 * 355.99808 * 15 11 10 21 21 H 0.96998 * 120.00497 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46982 * 60.00421 * 9 7 2 23 23 H 1.09002 * 109.47360 * 300.00061 * 9 7 2 24 24 H 1.08998 * 109.47151 * 60.00297 * 10 9 7 25 25 H 1.08998 * 109.47131 * 300.00572 * 10 9 7 26 26 H 1.09004 * 110.36786 * 265.07550 * 12 11 10 27 27 H 1.08995 * 110.37418 * 27.41244 * 12 11 10 28 28 H 1.09000 * 110.98519 * 81.14677 * 13 12 11 29 29 H 1.09002 * 110.98714 * 204.91664 * 13 12 11 30 30 H 1.09000 * 110.71752 * 277.13144 * 14 13 12 31 31 H 1.09002 * 110.71405 * 153.86036 * 14 13 12 32 32 H 1.09004 * 109.46908 * 299.11809 * 16 15 11 33 33 H 1.08990 * 109.47990 * 59.12998 * 16 15 11 34 34 H 1.09007 * 109.47319 * 299.55426 * 17 16 15 35 35 H 1.08996 * 109.48135 * 179.53944 * 17 16 15 36 36 H 1.09002 * 109.45740 * 179.74244 * 18 17 16 37 37 H 1.09005 * 109.45572 * 59.78775 * 18 17 16 38 38 H 1.09001 * 109.47349 * 300.24749 * 19 18 17 39 39 H 1.08991 * 109.48029 * 180.22929 * 19 18 17 40 40 H 1.09003 * 109.47435 * 300.84745 * 20 15 11 41 41 H 1.08996 * 109.47399 * 60.86024 * 20 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5108 -4.9342 0.0033 12 6 0.4659 -4.9434 -1.0434 13 6 0.4033 -6.4138 -1.5275 14 6 1.8979 -6.8271 -1.4704 15 6 2.4193 -6.0680 -0.2344 16 6 2.4196 -7.0009 0.9755 17 6 3.3509 -8.1852 0.7060 18 6 4.7680 -7.6702 0.4464 19 6 4.7613 -6.7459 -0.7728 20 6 3.8334 -5.5581 -0.5068 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8720 -3.6051 -0.8872 26 1 -0.4937 -4.6408 -0.6241 27 1 0.7464 -4.2850 -1.8655 28 1 -0.1963 -7.0224 -0.8506 29 1 0.0198 -6.4734 -2.5461 30 1 2.4218 -6.5048 -2.3702 31 1 1.9951 -7.9038 -1.3309 32 1 2.7682 -6.4571 1.8535 33 1 1.4083 -7.3668 1.1524 34 1 2.9979 -8.7336 -0.1675 35 1 3.3576 -8.8467 1.5722 36 1 5.4323 -8.5138 0.2590 37 1 5.1191 -7.1184 1.3185 38 1 4.4063 -7.2963 -1.6441 39 1 5.7719 -6.3829 -0.9592 40 1 3.8221 -4.9037 -1.3784 41 1 4.1928 -5.0033 0.3597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336511303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:14 Heat of formation + Delta-G solvation = -36.131372 kcal Electronic energy + Delta-G solvation = -17977.566561 eV Core-core repulsion = 15469.349013 eV Total energy + Delta-G solvation = -2508.217548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.49136 -37.37385 -35.47452 -33.66606 -31.66734 -31.19546 -29.97888 -26.43463 -25.78636 -23.93970 -23.09865 -22.23490 -20.70974 -18.97719 -18.48228 -17.11946 -16.74253 -16.47391 -15.78002 -15.63884 -15.23238 -14.70571 -14.42048 -14.16747 -13.74786 -13.52659 -13.42104 -13.13324 -13.02770 -12.77646 -12.51274 -12.41334 -12.18851 -12.06985 -11.80892 -11.77212 -11.53099 -11.37642 -11.26456 -11.14583 -10.96225 -10.85581 -10.57238 -9.04731 -8.22523 -6.34349 1.37291 1.39288 1.50516 2.38085 3.09113 3.10568 3.64072 3.80365 3.89787 4.07552 4.16672 4.22037 4.34197 4.42099 4.48834 4.55551 4.60785 4.61788 4.67769 4.74823 4.81941 4.94252 4.98140 5.02153 5.03683 5.12261 5.20184 5.25724 5.30551 5.31811 5.33120 5.40958 5.43740 5.56041 5.62891 5.68077 5.78108 6.09488 6.35001 6.40153 6.82453 7.34812 8.89688 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033705 B = 0.006123 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.538476 B = 4572.113877 C = 5049.110914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.032 3.968 10 C 0.077 3.923 11 N -0.537 5.537 12 C 0.044 3.956 13 C -0.121 4.121 14 C -0.125 4.125 15 C 0.096 3.904 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.128 4.128 21 H 0.264 0.736 22 H -0.004 1.004 23 H -0.014 1.014 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 -17.700 -2.449 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.050 4.050 11 N -0.260 5.260 12 C -0.084 4.084 13 C -0.159 4.159 14 C -0.163 4.163 15 C 0.007 3.993 16 C -0.129 4.129 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.166 4.166 21 H 0.073 0.927 22 H 0.014 0.986 23 H 0.005 0.995 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.896 -17.626 -1.943 19.026 hybrid contribution 0.285 1.716 -0.571 1.831 sum 7.182 -15.910 -2.515 17.636 Atomic orbital electron populations 1.70110 1.07844 1.27812 1.51394 1.25974 0.95767 1.03347 0.94530 0.85424 0.78637 0.78263 0.78586 1.19591 1.20536 1.18781 1.21603 0.93406 0.92327 1.51012 0.92402 1.19026 0.94287 0.92432 0.94811 1.22118 0.95712 0.88507 0.98675 1.63605 1.13040 1.02823 1.46575 1.22941 0.95384 0.97563 0.92484 1.22712 0.97332 0.93954 1.01867 1.22926 0.95017 1.01626 0.96738 1.21680 0.90854 0.90843 0.95886 1.21379 0.99823 0.95613 0.96101 1.21621 0.94466 0.96588 1.02440 1.21528 0.97213 0.99158 0.97531 1.21526 0.98700 0.95599 0.99049 1.22017 0.95597 0.98472 1.00561 0.92712 0.98560 0.99540 0.92909 0.95284 0.92641 0.95553 0.90127 0.89636 0.91641 0.88142 0.93807 0.92105 0.90485 0.90809 0.90207 0.92982 0.90853 0.91705 0.93382 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.79 4.64 29.85 0.14 1.92 16 10 C 0.08 3.52 3.85 86.31 0.33 3.85 16 11 N -0.54 -20.76 4.95 -838.06 -4.15 -24.91 16 12 C 0.04 1.64 5.31 86.77 0.46 2.10 16 13 C -0.12 -3.18 7.08 32.00 0.23 -2.95 16 14 C -0.13 -3.02 4.72 31.73 0.15 -2.87 16 15 C 0.10 2.83 0.86 3.70 0.00 2.84 16 16 C -0.09 -2.35 5.06 30.54 0.15 -2.19 16 17 C -0.11 -2.09 5.70 30.61 0.17 -1.92 16 18 C -0.12 -2.15 5.91 30.59 0.18 -1.97 16 19 C -0.11 -2.32 5.71 30.61 0.17 -2.15 16 20 C -0.13 -3.71 3.30 30.53 0.10 -3.61 16 21 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 22 H 0.00 -0.23 6.48 -2.39 -0.02 -0.25 16 23 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 24 H 0.05 2.43 7.35 -2.39 -0.02 2.42 16 25 H 0.03 1.31 5.84 -2.39 -0.01 1.29 16 26 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.03 1.07 7.03 -2.39 -0.02 1.06 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.58 7.60 -2.39 -0.02 1.56 16 31 H 0.10 1.89 5.81 -2.39 -0.01 1.88 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.22 6.16 -2.38 -0.01 1.21 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.37 7.11 -2.39 -0.02 1.35 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.54 6.52 -2.39 -0.02 1.53 16 41 H 0.05 1.62 6.93 -2.39 -0.02 1.61 16 Total: -1.00 -66.49 300.09 1.93 -64.56 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.97 Total: 9.54 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 2.79 Total: -38.52 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -3.86 Total: -82.96 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -66.49 1.93 -64.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336511303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.429 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds