Wall clock time and date at job start Sun Mar 29 2020 21:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47325 * 2 1 4 4 C 1.46901 * 111.00028 * 61.16106 * 3 2 1 5 5 C 1.50699 * 109.47281 * 66.04451 * 4 3 2 6 6 H 1.08000 * 120.00124 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99970 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00299 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47154 * 89.99555 * 9 7 5 11 11 H 1.48503 * 109.47423 * 209.99981 * 9 7 5 12 12 H 1.48503 * 109.46899 * 329.99878 * 9 7 5 13 13 C 1.46897 * 111.00070 * 297.20537 * 3 2 1 14 14 C 1.50692 * 109.47411 * 288.42955 * 13 3 2 15 15 C 1.39872 * 125.90115 * 95.36425 * 14 13 3 16 16 C 1.35321 * 107.91698 * 179.86452 * 15 14 13 17 17 C 1.50700 * 126.12426 * 180.14482 * 16 15 14 18 18 N 1.34944 * 107.75019 * 0.40335 * 16 15 14 19 19 C 1.46496 * 126.04186 * 179.74888 * 18 16 15 20 20 N 1.30841 * 125.89665 * 275.68407 * 14 13 3 21 21 H 1.08994 * 109.47311 * 180.43621 * 1 2 3 22 22 H 1.09000 * 109.47204 * 300.43625 * 1 2 3 23 23 H 1.09000 * 109.46972 * 60.43051 * 1 2 3 24 24 H 1.08992 * 109.47007 * 239.99640 * 2 1 3 25 25 H 1.09008 * 109.46590 * 119.99901 * 2 1 3 26 26 H 1.09004 * 109.47226 * 186.04867 * 4 3 2 27 27 H 1.08998 * 109.47110 * 306.04589 * 4 3 2 28 28 H 0.96998 * 120.00355 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46753 * 48.42648 * 13 3 2 30 30 H 1.09000 * 109.47535 * 168.42382 * 13 3 2 31 31 H 1.07996 * 126.04417 * 359.97438 * 15 14 13 32 32 H 1.09000 * 109.47397 * 270.29602 * 17 16 15 33 33 H 1.09002 * 109.46859 * 30.29992 * 17 16 15 34 34 H 1.09006 * 109.47165 * 150.29639 * 17 16 15 35 35 H 1.08998 * 109.47269 * 270.01952 * 19 18 16 36 36 H 1.09009 * 109.46934 * 30.02013 * 19 18 16 37 37 H 1.09004 * 109.47517 * 150.02004 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5716 2.1018 1.2013 5 6 2.2171 1.4933 2.4196 6 1 2.8930 0.6578 2.3121 7 6 1.9456 2.0038 3.6712 8 7 2.5093 1.4730 4.7343 9 14 0.7770 3.4492 3.8571 10 1 -0.6088 2.9458 4.0344 11 1 1.1676 4.2521 5.0437 12 1 0.8433 4.2988 2.6409 13 6 1.6041 2.0903 -1.2197 14 6 2.3830 1.5611 -2.3962 15 6 1.9584 0.5624 -3.2786 16 6 2.9353 0.3746 -4.1960 17 6 2.9029 -0.6054 -5.3404 18 7 3.9460 1.2179 -3.8991 19 6 5.2077 1.3434 -4.6331 20 7 3.5758 1.9524 -2.7652 21 1 -0.3633 -1.0276 0.0078 22 1 -0.3633 0.5206 0.8860 23 1 -0.3633 0.5071 -0.8938 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 1.8559 3.1514 1.1254 27 1 0.4878 2.0244 1.2875 28 1 2.3180 1.8319 5.6149 29 1 0.5391 1.9297 -1.3872 30 1 1.7972 3.1570 -1.1063 31 1 1.0165 0.0356 -3.2365 32 1 3.3170 -1.5593 -5.0138 33 1 1.8728 -0.7490 -5.6666 34 1 3.4954 -0.2165 -6.1686 35 1 5.9423 0.6566 -4.2129 36 1 5.0428 1.1013 -5.6831 37 1 5.5766 2.3657 -4.5495 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336649307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:39 Heat of formation + Delta-G solvation = 83.965483 kcal Electronic energy + Delta-G solvation = -16979.899498 eV Core-core repulsion = 14373.349397 eV Total energy + Delta-G solvation = -2606.550101 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03496 -37.31044 -33.52272 -32.36838 -31.89866 -29.71525 -28.72540 -26.89419 -26.26987 -24.42498 -22.70596 -20.26891 -19.73142 -18.50516 -16.69146 -16.35773 -15.61201 -15.02277 -14.70710 -14.29946 -13.96915 -13.52582 -13.29929 -13.17538 -12.86716 -12.47232 -12.43452 -12.22728 -12.13408 -11.66126 -11.53047 -11.32862 -10.93999 -10.66375 -10.31931 -10.21330 -9.84401 -9.77604 -9.20576 -8.83933 -8.50157 -8.25737 -7.22630 -5.98036 -3.94260 2.06627 2.68872 3.05033 3.32898 3.40825 3.43563 4.48281 4.58822 4.66247 4.95078 5.05856 5.09505 5.21647 5.34273 5.35412 5.37952 5.61330 5.68937 5.83107 5.86294 5.96811 6.03295 6.11300 6.16990 6.40126 6.50441 6.59026 6.90140 6.93369 7.05051 7.13793 7.21561 7.68844 7.99990 8.04323 8.18119 8.74560 9.11617 9.63970 11.15373 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038120 B = 0.005649 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.353902 B = 4955.856787 C = 5178.667629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 N -0.517 5.517 4 C 0.159 3.841 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.123 3.877 14 C 0.101 3.899 15 C -0.266 4.266 16 C 0.070 3.930 17 C -0.087 4.087 18 N -0.382 5.382 19 C 0.104 3.896 20 N -0.278 5.278 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.027 0.973 27 H -0.008 1.008 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -2.708 -20.383 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.068 4.068 3 N -0.241 5.241 4 C 0.033 3.967 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.007 4.007 14 C -0.067 4.067 15 C -0.295 4.295 16 C -0.057 4.057 17 C -0.146 4.146 18 N -0.165 5.165 19 C -0.038 4.038 20 N -0.100 5.100 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.010 0.990 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.734 -1.892 -20.012 20.114 hybrid contribution -2.046 0.205 0.066 2.058 sum -1.312 -1.688 -19.945 20.060 Atomic orbital electron populations 1.22391 0.99502 1.01253 1.01613 1.22013 0.91911 0.90922 1.01990 1.62081 1.59309 1.01974 1.00730 1.20263 0.93743 0.94427 0.88278 1.21021 1.27169 1.17386 0.88546 0.90218 1.24880 0.95960 0.96675 0.95824 1.69896 1.44105 1.41898 0.98308 0.86889 0.81545 0.83538 0.77956 1.20374 1.21240 1.19106 1.20457 0.94714 0.98420 0.87135 1.22265 0.92344 0.95636 0.96424 1.21112 1.02385 1.06270 0.99761 1.20979 0.89889 0.95768 0.99052 1.20392 1.03734 0.96617 0.93837 1.48468 1.14344 1.30327 1.23314 1.21734 0.82817 1.04182 0.95046 1.77453 1.14776 1.18398 0.99340 0.93110 0.91638 0.93553 0.92461 0.89727 0.95459 0.99046 0.92770 0.93071 0.90223 0.84076 0.90441 0.89930 0.91566 0.91027 0.90090 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 9.28 37.16 0.34 -2.96 16 2 C 0.06 1.20 5.73 -3.82 -0.02 1.18 16 3 N -0.52 -11.44 4.65 -237.52 -1.10 -12.55 16 4 C 0.16 3.94 3.56 -4.98 -0.02 3.93 16 5 C -0.50 -14.59 9.05 -34.44 -0.31 -14.90 16 6 H 0.08 2.54 7.35 -52.49 -0.39 2.15 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 9 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.12 2.31 5.40 -4.98 -0.03 2.29 16 14 C 0.10 1.82 6.11 -82.41 -0.50 1.31 16 15 C -0.27 -4.02 9.74 -40.01 -0.39 -4.41 16 16 C 0.07 0.92 6.93 -82.26 -0.57 0.35 16 17 C -0.09 -0.71 10.12 36.01 0.36 -0.35 16 18 N -0.38 -5.55 4.01 -63.88 -0.26 -5.81 16 19 C 0.10 0.99 11.27 59.84 0.67 1.66 16 20 N -0.28 -5.20 12.58 33.67 0.42 -4.77 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 1.28 6.28 -51.93 -0.33 0.95 16 23 H 0.05 0.72 6.26 -51.93 -0.33 0.40 16 24 H 0.06 1.07 6.66 -51.93 -0.35 0.72 16 25 H 0.08 1.90 6.83 -51.92 -0.35 1.55 16 26 H 0.03 0.70 6.92 -51.93 -0.36 0.34 16 27 H -0.01 -0.19 5.45 -51.93 -0.28 -0.48 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.05 0.87 5.89 -51.93 -0.31 0.57 16 30 H 0.08 1.52 7.82 -51.93 -0.41 1.11 16 31 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.42 7.08 -51.93 -0.37 0.05 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.51 7.05 -51.92 -0.37 0.14 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -34.06 296.76 -6.45 -40.50 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.53 Total: -1.65 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.56 Total: -10.01 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.16 Total: -50.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.06 -6.45 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336649307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.467 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds