Wall clock time and date at job start Sun Mar 29 2020 21:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47325 * 2 1 4 4 C 1.46901 * 111.00028 * 61.16106 * 3 2 1 5 5 C 1.50699 * 109.47281 * 66.04451 * 4 3 2 6 6 H 1.08000 * 120.00124 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99970 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00299 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47154 * 89.99555 * 9 7 5 11 11 H 1.48503 * 109.47423 * 209.99981 * 9 7 5 12 12 H 1.48503 * 109.46899 * 329.99878 * 9 7 5 13 13 C 1.46897 * 111.00070 * 297.20537 * 3 2 1 14 14 C 1.50692 * 109.47411 * 288.42955 * 13 3 2 15 15 C 1.39872 * 125.90115 * 95.36425 * 14 13 3 16 16 C 1.35321 * 107.91698 * 179.86452 * 15 14 13 17 17 C 1.50700 * 126.12426 * 180.14482 * 16 15 14 18 18 N 1.34944 * 107.75019 * 0.40335 * 16 15 14 19 19 C 1.46496 * 126.04186 * 179.74888 * 18 16 15 20 20 N 1.30841 * 125.89665 * 275.68407 * 14 13 3 21 21 H 1.08994 * 109.47311 * 180.43621 * 1 2 3 22 22 H 1.09000 * 109.47204 * 300.43625 * 1 2 3 23 23 H 1.09000 * 109.46972 * 60.43051 * 1 2 3 24 24 H 1.08992 * 109.47007 * 239.99640 * 2 1 3 25 25 H 1.09008 * 109.46590 * 119.99901 * 2 1 3 26 26 H 1.09004 * 109.47226 * 186.04867 * 4 3 2 27 27 H 1.08998 * 109.47110 * 306.04589 * 4 3 2 28 28 H 0.96998 * 120.00355 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46753 * 48.42648 * 13 3 2 30 30 H 1.09000 * 109.47535 * 168.42382 * 13 3 2 31 31 H 1.07996 * 126.04417 * 359.97438 * 15 14 13 32 32 H 1.09000 * 109.47397 * 270.29602 * 17 16 15 33 33 H 1.09002 * 109.46859 * 30.29992 * 17 16 15 34 34 H 1.09006 * 109.47165 * 150.29639 * 17 16 15 35 35 H 1.08998 * 109.47269 * 270.01952 * 19 18 16 36 36 H 1.09009 * 109.46934 * 30.02013 * 19 18 16 37 37 H 1.09004 * 109.47517 * 150.02004 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5716 2.1018 1.2013 5 6 2.2171 1.4933 2.4196 6 1 2.8930 0.6578 2.3121 7 6 1.9456 2.0038 3.6712 8 7 2.5093 1.4730 4.7343 9 14 0.7770 3.4492 3.8571 10 1 -0.6088 2.9458 4.0344 11 1 1.1676 4.2521 5.0437 12 1 0.8433 4.2988 2.6409 13 6 1.6041 2.0903 -1.2197 14 6 2.3830 1.5611 -2.3962 15 6 1.9584 0.5624 -3.2786 16 6 2.9353 0.3746 -4.1960 17 6 2.9029 -0.6054 -5.3404 18 7 3.9460 1.2179 -3.8991 19 6 5.2077 1.3434 -4.6331 20 7 3.5758 1.9524 -2.7652 21 1 -0.3633 -1.0276 0.0078 22 1 -0.3633 0.5206 0.8860 23 1 -0.3633 0.5071 -0.8938 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 1.8559 3.1514 1.1254 27 1 0.4878 2.0244 1.2875 28 1 2.3180 1.8319 5.6149 29 1 0.5391 1.9297 -1.3872 30 1 1.7972 3.1570 -1.1063 31 1 1.0165 0.0356 -3.2365 32 1 3.3170 -1.5593 -5.0138 33 1 1.8728 -0.7490 -5.6666 34 1 3.4954 -0.2165 -6.1686 35 1 5.9423 0.6566 -4.2129 36 1 5.0428 1.1013 -5.6831 37 1 5.5766 2.3657 -4.5495 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336649307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:39 Heat of formation + Delta-G solvation = 59.076957 kcal Electronic energy + Delta-G solvation = -16980.978746 eV Core-core repulsion = 14373.349397 eV Total energy + Delta-G solvation = -2607.629348 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.15678 -38.96406 -34.93977 -34.28220 -32.80189 -31.30334 -30.41857 -27.87778 -27.64729 -25.75225 -24.58111 -21.68479 -21.05866 -19.81560 -18.85571 -17.42014 -16.86492 -16.68843 -16.27419 -15.99690 -15.17288 -14.76776 -14.61837 -14.46422 -14.04768 -13.90974 -13.44380 -13.37570 -13.24189 -13.13974 -12.94684 -12.71201 -12.66647 -12.41774 -12.10583 -11.81276 -11.57979 -11.41862 -11.26480 -10.75491 -10.00591 -9.35681 -8.91083 -8.25921 -6.28542 0.98647 1.35144 1.38070 1.49063 1.73008 1.82863 2.36566 3.07390 3.42924 3.63007 3.83440 4.16347 4.22409 4.32316 4.38791 4.44345 4.49020 4.59256 4.65894 4.67465 4.78386 4.80852 4.83377 4.92844 5.01987 5.11003 5.11587 5.29094 5.35342 5.47165 5.58305 5.72884 6.02279 6.28122 6.42423 6.68253 6.76614 6.89867 7.34457 8.91196 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038120 B = 0.005649 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.353902 B = 4955.856787 C = 5178.667629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.066 3.934 3 N -0.541 5.541 4 C 0.171 3.829 5 C -0.511 4.511 6 H 0.032 0.968 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.947 3.053 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.250 1.250 13 C 0.128 3.872 14 C 0.080 3.920 15 C -0.287 4.287 16 C 0.082 3.918 17 C -0.084 4.084 18 N -0.383 5.383 19 C 0.092 3.908 20 N -0.332 5.332 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.022 0.978 27 H 0.005 0.995 28 H 0.266 0.734 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.158 0.842 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 -2.644 -23.214 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.062 4.062 3 N -0.265 5.265 4 C 0.044 3.956 5 C -0.549 4.549 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.770 3.230 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.174 1.174 13 C -0.002 4.002 14 C -0.086 4.086 15 C -0.316 4.316 16 C -0.046 4.046 17 C -0.142 4.142 18 N -0.166 5.166 19 C -0.047 4.047 20 N -0.155 5.155 21 H 0.092 0.908 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.645 -1.834 -22.871 22.953 hybrid contribution -1.459 0.073 0.837 1.684 sum -2.104 -1.762 -22.033 22.203 Atomic orbital electron populations 1.22274 0.97038 1.02798 1.01581 1.21898 0.93914 0.89675 1.00756 1.61915 1.60571 1.02894 1.01116 1.19985 0.93826 0.93845 0.87912 1.21218 1.26577 1.16302 0.90839 0.94989 1.25830 0.97925 0.99965 0.95176 1.70057 1.46108 1.43958 0.99061 0.85722 0.79306 0.79493 0.78496 1.18728 1.20799 1.17388 1.20406 0.96143 0.97514 0.86092 1.22197 0.92647 0.97019 0.96761 1.21360 1.03894 1.06305 1.00057 1.21754 0.88440 0.95082 0.99335 1.20582 1.05545 0.95601 0.92516 1.48832 1.15805 1.29694 1.22296 1.22133 0.81300 1.04542 0.96766 1.77320 1.15637 1.20746 1.01844 0.90823 0.93874 0.91155 0.90969 0.93569 0.95973 0.97784 0.92488 0.90950 0.91225 0.82456 0.89260 0.88247 0.89111 0.90275 0.86097 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.97 9.28 71.98 0.67 -5.30 16 2 C 0.07 2.65 5.73 86.30 0.49 3.15 16 3 N -0.54 -24.31 4.65 -905.38 -4.21 -28.52 16 4 C 0.17 8.59 3.56 85.56 0.30 8.89 16 5 C -0.51 -30.84 9.05 25.60 0.23 -30.61 16 6 H 0.03 2.17 7.35 -2.91 -0.02 2.15 16 7 C 0.01 0.47 5.47 84.65 0.46 0.93 16 8 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 9 Si 0.95 45.19 27.47 68.60 1.88 47.08 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 13 C 0.13 4.77 5.40 85.55 0.46 5.23 16 14 C 0.08 2.83 6.11 43.10 0.26 3.09 16 15 C -0.29 -8.12 9.74 21.99 0.21 -7.91 16 16 C 0.08 1.94 6.93 41.41 0.29 2.22 16 17 C -0.08 -1.01 10.12 71.24 0.72 -0.29 16 18 N -0.38 -10.49 4.01 -356.03 -1.43 -11.92 16 19 C 0.09 1.54 11.27 127.77 1.44 2.98 16 20 N -0.33 -12.39 12.58 -47.39 -0.60 -12.99 16 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.04 1.63 6.28 -2.39 -0.01 1.62 16 23 H 0.07 2.01 6.26 -2.39 -0.01 1.99 16 24 H 0.07 2.67 6.66 -2.39 -0.02 2.66 16 25 H 0.05 2.19 6.83 -2.38 -0.02 2.17 16 26 H 0.02 1.13 6.92 -2.38 -0.02 1.11 16 27 H 0.00 0.22 5.45 -2.39 -0.01 0.21 16 28 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.07 2.34 5.89 -2.38 -0.01 2.32 16 30 H 0.07 2.67 7.82 -2.39 -0.02 2.65 16 31 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.67 7.08 -2.38 -0.02 0.65 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 1.02 7.05 -2.38 -0.02 1.00 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -77.61 296.76 2.49 -75.12 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.99 Total: 9.73 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 5.55 Total: -17.60 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -5.94 Total: -114.32 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -77.61 2.49 -75.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336649307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.198 kcal (2) G-P(sol) polarization free energy of solvation -77.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds