Wall clock time and date at job start Sun Mar 29 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00074 * 2 1 4 4 C 1.53000 * 109.47211 * 124.99648 * 3 2 1 5 5 C 1.53000 * 109.47246 * 182.28997 * 4 3 2 6 6 H 1.09001 * 109.46847 * 55.36821 * 5 4 3 7 7 C 1.52998 * 109.46920 * 175.36899 * 5 4 3 8 8 C 1.53001 * 109.46794 * 185.89655 * 7 5 4 9 9 N 1.46897 * 109.47046 * 295.36876 * 5 4 3 10 10 C 1.46901 * 110.99856 * 152.43393 * 9 5 4 11 11 C 1.52998 * 109.47230 * 269.45426 * 10 9 5 12 12 C 1.50705 * 115.54943 * 40.48974 * 11 10 9 13 13 H 1.07992 * 120.00119 * 269.35368 * 12 11 10 14 14 C 1.37882 * 119.99397 * 89.34818 * 12 11 10 15 15 N 1.31511 * 119.99255 * 181.97737 * 14 12 11 16 16 Si 1.86796 * 120.00206 * 1.98130 * 14 12 11 17 17 H 1.48495 * 109.47503 * 93.33670 * 16 14 12 18 18 H 1.48505 * 109.46964 * 213.33983 * 16 14 12 19 19 H 1.48501 * 109.47068 * 333.33318 * 16 14 12 20 20 C 1.52998 * 117.49980 * 254.79139 * 11 10 9 21 21 C 1.52992 * 117.50255 * 186.16583 * 11 10 9 22 22 H 1.07998 * 120.00052 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.99956 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00052 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46482 * 5.00558 * 3 2 1 26 26 H 1.08989 * 109.47232 * 245.00307 * 3 2 1 27 27 H 1.09004 * 109.46483 * 62.28909 * 4 3 2 28 28 H 1.09000 * 109.47228 * 302.29698 * 4 3 2 29 29 H 1.09000 * 109.47390 * 65.89625 * 7 5 4 30 30 H 1.09005 * 109.46850 * 305.89300 * 7 5 4 31 31 H 1.09005 * 109.46960 * 53.23576 * 8 7 5 32 32 H 1.09004 * 109.46932 * 173.23336 * 8 7 5 33 33 H 1.08990 * 109.47221 * 293.23377 * 8 7 5 34 34 H 1.00905 * 111.00043 * 276.38756 * 9 5 4 35 35 H 1.08997 * 109.47234 * 29.45427 * 10 9 5 36 36 H 1.09006 * 109.46937 * 149.45173 * 10 9 5 37 37 H 0.97007 * 119.99604 * 180.02562 * 15 14 12 38 38 H 1.09003 * 117.49764 * 359.97438 * 20 11 10 39 39 H 1.08997 * 117.50297 * 145.01641 * 20 11 10 40 40 H 1.08996 * 117.50421 * 214.97980 * 21 11 10 41 41 H 1.09007 * 117.49784 * 359.97205 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7588 2.6807 1.2151 6 1 3.0252 3.4865 1.2429 7 6 4.6439 2.7535 2.4609 8 6 5.2528 4.1526 2.5728 9 7 4.5924 2.8187 0.0134 10 6 4.7709 4.2323 -0.3440 11 6 3.6596 4.6596 -1.3050 12 6 2.2864 4.1247 -0.9897 13 1 1.9610 3.1874 -1.4162 14 6 1.4457 4.8321 -0.1568 15 7 0.2624 4.3466 0.1494 16 14 1.9872 6.4799 0.5366 17 1 1.5070 7.5713 -0.3483 18 1 1.4156 6.6569 1.8958 19 1 3.4696 6.5213 0.6140 20 6 4.0290 4.8337 -2.7795 21 6 3.7498 6.0617 -1.9106 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4027 -0.9313 27 1 3.7650 0.5312 1.0709 28 1 2.4815 1.1948 2.1104 29 1 5.4419 2.0150 2.3834 30 1 4.0425 2.5470 3.3463 31 1 4.4593 4.8987 2.5295 32 1 5.7848 4.2426 3.5200 33 1 5.9480 4.3133 1.7490 34 1 5.4835 2.3617 0.1371 35 1 4.7265 4.8434 0.5574 36 1 5.7394 4.3657 -0.8261 37 1 -0.3293 4.8444 0.7352 38 1 5.0638 4.6442 -3.0649 39 1 3.2788 4.5613 -3.5218 40 1 2.8159 6.5972 -2.0813 41 1 4.6006 6.6799 -1.6241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336661531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:28 Heat of formation + Delta-G solvation = 37.701197 kcal Electronic energy + Delta-G solvation = -18389.474218 eV Core-core repulsion = 15884.458290 eV Total energy + Delta-G solvation = -2505.015928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.14365 -36.03648 -34.19946 -31.99115 -30.97249 -30.00359 -26.25225 -25.30519 -23.41844 -21.66991 -21.46229 -19.80449 -18.83263 -18.73577 -16.03625 -15.20248 -14.90778 -14.80940 -14.11796 -13.92509 -13.46869 -13.14378 -12.69871 -12.56873 -12.18707 -12.06193 -11.98239 -11.29757 -11.18485 -11.02878 -10.75650 -10.67480 -10.37253 -10.33208 -10.11011 -9.99675 -9.73815 -9.55381 -9.35908 -8.85311 -8.51031 -8.35214 -8.18082 -7.31706 -5.97415 -3.92162 3.09273 3.31610 3.42916 3.47161 4.50648 4.86411 5.23158 5.31507 5.32296 5.50590 5.59096 5.79149 5.86016 5.97619 6.05907 6.15506 6.18178 6.20949 6.31063 6.32214 6.37962 6.41673 6.53620 6.57674 6.58286 6.65980 6.78213 6.83574 6.89688 7.04081 7.19359 7.24953 7.29543 7.41074 7.68625 7.82655 8.02343 8.04138 8.38694 8.72986 9.11245 9.66361 11.12469 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.011942 C = 0.010053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.862261 B = 2344.183727 C = 2784.558477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.099 4.099 4 C -0.085 4.085 5 C 0.088 3.912 6 H 0.107 0.893 7 C -0.155 4.155 8 C -0.155 4.155 9 N -0.655 5.655 10 C 0.084 3.916 11 C 0.015 3.985 12 C -0.453 4.453 13 H 0.094 0.906 14 C 0.072 3.928 15 N -0.900 5.900 16 Si 0.863 3.137 17 H -0.285 1.285 18 H -0.300 1.300 19 H -0.259 1.259 20 C -0.180 4.180 21 C -0.213 4.213 22 H 0.104 0.896 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.317 0.683 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.260 0.740 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 -3.135 2.736 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.022 4.022 6 H 0.125 0.875 7 C -0.194 4.194 8 C -0.212 4.212 9 N -0.283 5.283 10 C -0.045 4.045 11 C 0.014 3.986 12 C -0.491 4.491 13 H 0.111 0.889 14 C -0.128 4.128 15 N -0.539 5.539 16 Si 0.693 3.307 17 H -0.212 1.212 18 H -0.227 1.227 19 H -0.184 1.184 20 C -0.218 4.218 21 C -0.251 4.251 22 H 0.123 0.877 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.137 0.863 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.562 -3.192 2.405 7.683 hybrid contribution 0.877 1.294 1.122 1.924 sum 7.439 -1.898 3.526 8.449 Atomic orbital electron populations 1.23834 0.96368 1.01122 1.03574 1.23264 0.96099 0.99086 0.97967 1.21133 0.98896 0.94950 0.98576 1.21301 0.97148 0.95831 0.98013 1.21817 0.94981 0.99835 0.85538 0.87522 1.22376 0.99787 0.96477 1.00804 1.21963 1.00823 0.97866 1.00578 1.60128 1.17736 1.14114 1.36311 1.21860 0.95822 0.88784 0.98077 1.19527 0.96612 0.92443 0.90037 1.20453 0.93741 1.07749 1.27126 0.88873 1.24873 0.94815 0.96867 0.96265 1.69811 1.08501 1.38445 1.37133 0.87142 0.79811 0.86046 0.77730 1.21154 1.22697 1.18392 1.22804 0.99252 1.02973 0.96736 1.22957 1.00893 0.92456 1.08772 0.87723 0.90334 0.89546 0.86335 0.90028 0.94127 0.93620 0.92751 0.92209 0.92549 0.93702 0.92627 0.86687 0.93835 0.94499 0.92967 0.91518 0.89986 0.89916 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.86 14.32 29.02 0.42 -3.44 16 2 C -0.15 -2.68 9.52 -36.02 -0.34 -3.02 16 3 C -0.10 -2.03 3.89 -27.88 -0.11 -2.14 16 4 C -0.08 -1.55 4.88 -26.73 -0.13 -1.68 16 5 C 0.09 1.64 1.56 -67.72 -0.11 1.54 16 6 H 0.11 2.41 5.37 -51.93 -0.28 2.13 16 7 C -0.16 -2.43 5.38 -26.73 -0.14 -2.57 16 8 C -0.16 -2.40 8.37 37.16 0.31 -2.09 16 9 N -0.65 -11.97 5.31 -106.73 -0.57 -12.54 16 10 C 0.08 1.64 4.80 -3.82 -0.02 1.62 16 11 C 0.02 0.34 1.21 -155.66 -0.19 0.15 16 12 C -0.45 -11.38 5.72 -34.44 -0.20 -11.58 16 13 H 0.09 2.57 5.47 -52.49 -0.29 2.28 16 14 C 0.07 1.88 4.26 -17.82 -0.08 1.81 16 15 N -0.90 -24.99 12.98 55.43 0.72 -24.27 16 16 Si 0.86 20.94 24.82 -169.99 -4.22 16.72 16 17 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 19 H -0.26 -5.99 5.46 56.52 0.31 -5.68 16 20 C -0.18 -3.68 9.88 -26.73 -0.26 -3.95 16 21 C -0.21 -4.53 7.27 -26.74 -0.19 -4.73 16 22 H 0.10 2.13 7.84 -52.49 -0.41 1.72 16 23 H 0.08 1.22 8.06 -52.49 -0.42 0.80 16 24 H 0.09 1.41 8.06 -52.49 -0.42 0.99 16 25 H 0.12 2.87 5.03 -51.93 -0.26 2.61 16 26 H 0.08 1.80 6.94 -51.94 -0.36 1.44 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.76 8.01 -51.93 -0.42 0.35 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.98 7.65 -51.93 -0.40 0.58 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.84 6.30 -51.93 -0.33 0.51 16 34 H 0.32 5.05 8.44 -39.29 -0.33 4.72 16 35 H 0.04 0.88 3.52 -51.93 -0.18 0.69 16 36 H 0.04 0.66 7.95 -51.93 -0.41 0.24 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 39 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.08 1.87 6.81 -51.93 -0.35 1.52 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -25.81 304.54 -7.57 -33.38 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.05 Total: 12.21 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -1.04 Total: -30.08 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.15 Total: -36.81 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.22 Total: 16.72 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.81 -7.57 -33.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336661531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.077 kcal (2) G-P(sol) polarization free energy of solvation -25.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds