Wall clock time and date at job start Sun Mar 29 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00074 * 2 1 4 4 C 1.53000 * 109.47211 * 124.99648 * 3 2 1 5 5 C 1.53000 * 109.47246 * 182.28997 * 4 3 2 6 6 H 1.09001 * 109.46847 * 55.36821 * 5 4 3 7 7 C 1.52998 * 109.46920 * 175.36899 * 5 4 3 8 8 C 1.53001 * 109.46794 * 185.89655 * 7 5 4 9 9 N 1.46897 * 109.47046 * 295.36876 * 5 4 3 10 10 C 1.46901 * 110.99856 * 152.43393 * 9 5 4 11 11 C 1.52998 * 109.47230 * 269.45426 * 10 9 5 12 12 C 1.50705 * 115.54943 * 40.48974 * 11 10 9 13 13 H 1.07992 * 120.00119 * 269.35368 * 12 11 10 14 14 C 1.37882 * 119.99397 * 89.34818 * 12 11 10 15 15 N 1.31511 * 119.99255 * 181.97737 * 14 12 11 16 16 Si 1.86796 * 120.00206 * 1.98130 * 14 12 11 17 17 H 1.48495 * 109.47503 * 93.33670 * 16 14 12 18 18 H 1.48505 * 109.46964 * 213.33983 * 16 14 12 19 19 H 1.48501 * 109.47068 * 333.33318 * 16 14 12 20 20 C 1.52998 * 117.49980 * 254.79139 * 11 10 9 21 21 C 1.52992 * 117.50255 * 186.16583 * 11 10 9 22 22 H 1.07998 * 120.00052 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.99956 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00052 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46482 * 5.00558 * 3 2 1 26 26 H 1.08989 * 109.47232 * 245.00307 * 3 2 1 27 27 H 1.09004 * 109.46483 * 62.28909 * 4 3 2 28 28 H 1.09000 * 109.47228 * 302.29698 * 4 3 2 29 29 H 1.09000 * 109.47390 * 65.89625 * 7 5 4 30 30 H 1.09005 * 109.46850 * 305.89300 * 7 5 4 31 31 H 1.09005 * 109.46960 * 53.23576 * 8 7 5 32 32 H 1.09004 * 109.46932 * 173.23336 * 8 7 5 33 33 H 1.08990 * 109.47221 * 293.23377 * 8 7 5 34 34 H 1.00905 * 111.00043 * 276.38756 * 9 5 4 35 35 H 1.08997 * 109.47234 * 29.45427 * 10 9 5 36 36 H 1.09006 * 109.46937 * 149.45173 * 10 9 5 37 37 H 0.97007 * 119.99604 * 180.02562 * 15 14 12 38 38 H 1.09003 * 117.49764 * 359.97438 * 20 11 10 39 39 H 1.08997 * 117.50297 * 145.01641 * 20 11 10 40 40 H 1.08996 * 117.50421 * 214.97980 * 21 11 10 41 41 H 1.09007 * 117.49784 * 359.97205 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7588 2.6807 1.2151 6 1 3.0252 3.4865 1.2429 7 6 4.6439 2.7535 2.4609 8 6 5.2528 4.1526 2.5728 9 7 4.5924 2.8187 0.0134 10 6 4.7709 4.2323 -0.3440 11 6 3.6596 4.6596 -1.3050 12 6 2.2864 4.1247 -0.9897 13 1 1.9610 3.1874 -1.4162 14 6 1.4457 4.8321 -0.1568 15 7 0.2624 4.3466 0.1494 16 14 1.9872 6.4799 0.5366 17 1 1.5070 7.5713 -0.3483 18 1 1.4156 6.6569 1.8958 19 1 3.4696 6.5213 0.6140 20 6 4.0290 4.8337 -2.7795 21 6 3.7498 6.0617 -1.9106 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4027 -0.9313 27 1 3.7650 0.5312 1.0709 28 1 2.4815 1.1948 2.1104 29 1 5.4419 2.0150 2.3834 30 1 4.0425 2.5470 3.3463 31 1 4.4593 4.8987 2.5295 32 1 5.7848 4.2426 3.5200 33 1 5.9480 4.3133 1.7490 34 1 5.4835 2.3617 0.1371 35 1 4.7265 4.8434 0.5574 36 1 5.7394 4.3657 -0.8261 37 1 -0.3293 4.8444 0.7352 38 1 5.0638 4.6442 -3.0649 39 1 3.2788 4.5613 -3.5218 40 1 2.8159 6.5972 -2.0813 41 1 4.6006 6.6799 -1.6241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336661531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:28 Heat of formation + Delta-G solvation = 22.995934 kcal Electronic energy + Delta-G solvation = -18390.111886 eV Core-core repulsion = 15884.458290 eV Total energy + Delta-G solvation = -2505.653596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69330 -37.63750 -35.70701 -33.99058 -32.34299 -31.45341 -27.95973 -27.04317 -24.97248 -23.24666 -22.92337 -21.29718 -20.54051 -20.33973 -17.91745 -16.83680 -16.51647 -16.27517 -15.71478 -15.48308 -14.95138 -14.61814 -14.58666 -14.13070 -13.86874 -13.56129 -13.43089 -13.00418 -12.73540 -12.55037 -12.44296 -12.17687 -12.02742 -11.87781 -11.75456 -11.52159 -11.39667 -11.12592 -11.07764 -10.68898 -10.26753 -10.06329 -9.89318 -8.76879 -8.02410 -5.97303 1.34184 1.42097 1.49427 1.61066 2.49433 3.26860 3.31697 3.73961 3.96674 4.24173 4.27200 4.33288 4.38281 4.50931 4.54184 4.59496 4.72273 4.82982 4.85334 4.89524 4.92241 4.95878 5.01754 5.11671 5.14898 5.19843 5.24115 5.32630 5.40852 5.47115 5.55138 5.62381 5.71144 5.86916 5.93870 6.13605 6.34475 6.50513 6.71145 7.00721 7.13025 7.62378 9.09554 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.011942 C = 0.010053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.862261 B = 2344.183727 C = 2784.558477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.093 4.093 4 C -0.079 4.079 5 C 0.091 3.909 6 H 0.063 0.937 7 C -0.148 4.148 8 C -0.153 4.153 9 N -0.661 5.661 10 C 0.091 3.909 11 C -0.010 4.010 12 C -0.429 4.429 13 H 0.061 0.939 14 C 0.033 3.967 15 N -0.937 5.937 16 Si 0.903 3.097 17 H -0.293 1.293 18 H -0.312 1.312 19 H -0.236 1.236 20 C -0.166 4.166 21 C -0.213 4.213 22 H 0.071 0.929 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.335 0.665 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.253 0.747 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -3.938 3.026 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.167 4.167 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.020 4.020 6 H 0.081 0.919 7 C -0.187 4.187 8 C -0.210 4.210 9 N -0.290 5.290 10 C -0.038 4.038 11 C -0.011 4.011 12 C -0.468 4.468 13 H 0.079 0.921 14 C -0.163 4.163 15 N -0.579 5.579 16 Si 0.733 3.267 17 H -0.220 1.220 18 H -0.241 1.241 19 H -0.159 1.159 20 C -0.203 4.203 21 C -0.251 4.251 22 H 0.089 0.911 23 H 0.129 0.871 24 H 0.137 0.863 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.531 -3.994 2.685 10.677 hybrid contribution -0.066 1.487 0.954 1.768 sum 9.465 -2.507 3.639 10.446 Atomic orbital electron populations 1.23862 0.96534 1.01101 1.03499 1.23353 0.96156 0.99228 0.97949 1.20898 0.98496 0.94886 0.98688 1.21252 0.97068 0.96661 0.96745 1.21622 0.94777 0.98258 0.87295 0.91917 1.22278 0.99899 0.97500 0.99037 1.21930 1.00168 0.96744 1.02156 1.59992 1.18793 1.13774 1.36465 1.21729 0.95694 0.89186 0.97215 1.19642 0.95934 0.93476 0.92077 1.20446 0.95174 1.05933 1.25231 0.92141 1.25299 0.94866 0.99039 0.97085 1.69958 1.09796 1.39494 1.38653 0.86496 0.80754 0.83245 0.76252 1.21991 1.24053 1.15935 1.22822 1.00597 1.01681 0.95248 1.22954 1.00959 0.92356 1.08832 0.91080 0.87054 0.86335 0.90497 0.91996 0.91663 0.93815 0.90145 0.92119 0.95246 0.91358 0.92029 0.84624 0.94415 0.91850 0.93767 0.88437 0.91273 0.91932 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.77 14.32 67.78 0.97 -6.80 16 2 C -0.15 -5.37 9.52 25.65 0.24 -5.13 16 3 C -0.09 -3.86 3.89 29.85 0.12 -3.74 16 4 C -0.08 -2.82 4.88 30.59 0.15 -2.67 16 5 C 0.09 3.27 1.56 44.92 0.07 3.34 16 6 H 0.06 2.87 5.37 -2.39 -0.01 2.86 16 7 C -0.15 -4.25 5.38 30.59 0.16 -4.08 16 8 C -0.15 -4.31 8.37 71.98 0.60 -3.71 16 9 N -0.66 -22.71 5.31 -491.57 -2.61 -25.32 16 10 C 0.09 3.32 4.80 86.30 0.41 3.73 16 11 C -0.01 -0.42 1.21 -52.93 -0.06 -0.48 16 12 C -0.43 -22.11 5.72 25.60 0.15 -21.96 16 13 H 0.06 3.49 5.47 -2.91 -0.02 3.47 16 14 C 0.03 1.79 4.26 84.66 0.36 2.16 16 15 N -0.94 -54.97 12.98 21.45 0.28 -54.69 16 16 Si 0.90 43.92 24.82 68.60 1.70 45.62 16 17 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 18 H -0.31 -15.68 7.11 99.48 0.71 -14.98 16 19 H -0.24 -10.47 5.46 99.48 0.54 -9.92 16 20 C -0.17 -6.44 9.88 30.59 0.30 -6.14 16 21 C -0.21 -8.66 7.27 30.59 0.22 -8.44 16 22 H 0.07 3.07 7.84 -2.91 -0.02 3.04 16 23 H 0.11 3.29 8.06 -2.91 -0.02 3.26 16 24 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 25 H 0.08 3.92 5.03 -2.38 -0.01 3.90 16 26 H 0.06 2.78 6.94 -2.39 -0.02 2.76 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.91 8.01 -2.39 -0.02 1.90 16 30 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.03 0.97 7.65 -2.38 -0.02 0.95 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.06 1.64 6.30 -2.39 -0.02 1.63 16 34 H 0.34 9.45 8.44 -89.69 -0.76 8.69 16 35 H 0.04 1.43 3.52 -2.39 -0.01 1.42 16 36 H 0.06 1.98 7.95 -2.38 -0.02 1.96 16 37 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 38 H 0.10 3.19 8.09 -2.39 -0.02 3.17 16 39 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.06 2.79 6.81 -2.39 -0.02 2.77 16 41 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -58.20 304.54 3.14 -55.06 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.07 Total: 33.25 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 3.70 Total: -53.92 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.33 Total: -80.00 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.70 Total: 45.62 kcal Total: -58.20 3.14 -55.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336661531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.053 kcal (2) G-P(sol) polarization free energy of solvation -58.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds