Wall clock time and date at job start Sun Mar 29 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 C 1.53000 * 109.47410 * 240.00053 * 2 1 3 5 5 C 1.50700 * 109.47454 * 120.00103 * 2 1 3 6 6 C 1.29827 * 118.54758 * 359.97438 * 5 2 1 7 7 C 1.50145 * 123.28013 * 180.11419 * 6 5 2 8 8 N 1.46839 * 110.27883 * 343.21205 * 7 6 5 9 9 C 1.46909 * 110.99825 * 287.54159 * 8 7 6 10 10 C 1.52998 * 109.46672 * 293.94947 * 9 8 7 11 11 C 1.50699 * 109.46917 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99938 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00304 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99693 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00149 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47379 * 59.99781 * 15 13 11 17 17 H 1.48497 * 109.47159 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.47150 * 299.99936 * 15 13 11 19 19 C 1.47241 * 110.20324 * 50.92522 * 8 7 6 20 20 C 1.50297 * 118.55558 * 180.23718 * 5 2 1 21 21 H 1.09004 * 109.47141 * 300.00252 * 1 2 3 22 22 H 1.09005 * 109.46704 * 59.99563 * 1 2 3 23 23 H 1.08995 * 109.47451 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46684 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47061 * 299.99846 * 3 2 1 26 26 H 1.08994 * 109.47137 * 60.00363 * 3 2 1 27 27 H 1.09003 * 109.47048 * 300.00347 * 4 2 1 28 28 H 1.09002 * 109.46959 * 59.99539 * 4 2 1 29 29 H 1.08993 * 109.47856 * 180.02562 * 4 2 1 30 30 H 1.08002 * 118.36271 * 0.40391 * 6 5 2 31 31 H 1.08997 * 109.33533 * 103.46105 * 7 6 5 32 32 H 1.09004 * 109.33459 * 223.13055 * 7 6 5 33 33 H 1.08991 * 109.47507 * 53.94955 * 9 8 7 34 34 H 1.09000 * 109.46643 * 173.95350 * 9 8 7 35 35 H 1.09004 * 109.47193 * 300.00020 * 10 9 8 36 36 H 1.08993 * 109.47677 * 60.00267 * 10 9 8 37 37 H 0.96996 * 120.00034 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.63743 * 50.89287 * 19 8 7 39 39 H 1.09004 * 109.63640 * 171.50000 * 19 8 7 40 40 H 1.08995 * 109.56219 * 43.50653 * 20 5 2 41 41 H 1.09003 * 109.24817 * 283.69071 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1640 -1.1926 2.0665 7 6 1.5461 -1.9164 3.3253 8 7 2.9513 -2.3380 3.2633 9 6 3.1251 -3.4541 2.3239 10 6 2.3978 -4.6891 2.8592 11 6 2.5766 -5.8341 1.8959 12 1 3.1512 -5.6947 0.9921 13 6 2.0067 -7.0597 2.1684 14 7 1.3066 -7.2293 3.2687 15 14 2.2278 -8.4788 0.9740 16 1 3.6742 -8.7807 0.8261 17 1 1.5220 -9.6776 1.4935 18 1 1.6623 -8.1061 -0.3477 19 6 3.8081 -1.1990 2.8939 20 6 3.5165 -0.8243 1.4386 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1299 -0.7217 -1.2491 30 1 0.1144 -1.0709 1.8432 31 1 1.4053 -1.2540 4.1793 32 1 0.9127 -2.7958 3.4423 33 1 2.7106 -3.1803 1.3538 34 1 4.1868 -3.6760 2.2160 35 1 2.8124 -4.9629 3.8295 36 1 1.3362 -4.4672 2.9673 37 1 0.9060 -8.0916 3.4606 38 1 3.5885 -0.3502 3.5415 39 1 4.8562 -1.4805 2.9968 40 1 3.9917 0.1289 1.2072 41 1 3.9137 -1.5960 0.7792 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336691412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:50 Heat of formation + Delta-G solvation = -0.911681 kcal Electronic energy + Delta-G solvation = -17718.933290 eV Core-core repulsion = 15212.242983 eV Total energy + Delta-G solvation = -2506.690308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78446 -36.82125 -33.25765 -31.31454 -30.85498 -29.01974 -27.34198 -27.22444 -25.20827 -23.37580 -22.21262 -20.95628 -19.15477 -16.74514 -16.19123 -15.97325 -14.81720 -14.52034 -14.30006 -14.08415 -13.92097 -13.85755 -13.24312 -12.53045 -12.42287 -12.35800 -12.08059 -11.81751 -11.64878 -11.48410 -11.24612 -11.16082 -10.96272 -10.87478 -10.76993 -10.57453 -10.52349 -10.07952 -9.73171 -9.29346 -9.07961 -8.45244 -8.25484 -7.59207 -5.95503 -3.97308 2.53261 3.35442 3.39717 3.42148 4.44133 4.58431 4.80234 4.87041 5.02515 5.24455 5.39975 5.42046 5.43042 5.53486 5.60913 5.62862 5.74777 5.76455 5.85465 5.89829 5.93178 5.98250 6.06648 6.13811 6.16895 6.21389 6.27168 6.39396 6.42384 6.51534 6.61057 6.90350 7.06471 7.28129 7.58618 7.66708 7.85640 7.96989 8.14537 8.49299 9.09713 9.65758 11.15976 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.006284 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.354324 B = 4454.829477 C = 4840.437427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.117 4.117 6 C -0.184 4.184 7 C 0.076 3.924 8 N -0.530 5.530 9 C 0.060 3.940 10 C 0.028 3.972 11 C -0.519 4.519 12 H 0.052 0.948 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.053 3.947 20 C -0.116 4.116 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 16.150 -5.169 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.192 4.192 4 C -0.195 4.195 5 C -0.117 4.117 6 C -0.203 4.203 7 C -0.052 4.052 8 N -0.252 5.252 9 C -0.067 4.067 10 C -0.009 4.009 11 C -0.558 4.558 12 H 0.070 0.930 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.076 4.076 20 C -0.155 4.155 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.741 15.832 -4.582 16.499 hybrid contribution -0.222 -0.586 -1.550 1.672 sum 0.519 15.246 -6.133 16.441 Atomic orbital electron populations 1.21963 0.94726 1.02082 1.01257 1.19571 0.95157 0.94780 0.93814 1.21836 1.00997 0.95144 1.01265 1.21833 1.01041 1.00604 0.96020 1.20678 0.94935 1.00166 0.95915 1.23031 0.99822 0.99537 0.97934 1.21156 0.90616 0.99252 0.94136 1.62810 1.05225 1.06676 1.50443 1.22337 1.00277 0.91220 0.92865 1.19093 0.95192 0.89914 0.96695 1.21153 1.32569 0.95690 1.06413 0.92993 1.24978 0.95308 0.98637 0.95326 1.69961 1.34496 1.24161 1.24704 0.86688 0.78277 0.81858 0.81339 1.20250 1.21276 1.20363 1.22222 0.98077 0.94019 0.93288 1.21003 0.93422 1.01536 0.99528 0.92474 0.92906 0.92065 0.92588 0.92924 0.92798 0.92275 0.92970 0.92646 0.87141 0.90791 0.88747 0.95394 0.92573 0.95930 0.96516 0.93001 0.91522 0.90939 0.91418 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.09 37.15 0.26 -1.40 16 2 C -0.03 -0.41 0.85 -155.66 -0.13 -0.54 16 3 C -0.14 -1.41 8.24 37.16 0.31 -1.11 16 4 C -0.14 -1.69 8.30 37.16 0.31 -1.38 16 5 C -0.12 -1.69 4.08 -100.93 -0.41 -2.10 16 6 C -0.18 -2.88 8.43 -35.96 -0.30 -3.19 16 7 C 0.08 1.33 5.83 -5.28 -0.03 1.30 16 8 N -0.53 -9.95 5.03 -236.11 -1.19 -11.14 16 9 C 0.06 1.30 4.00 -3.82 -0.02 1.29 16 10 C 0.03 0.75 4.92 -27.88 -0.14 0.62 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.05 0.80 6.03 -3.60 -0.02 0.78 16 20 C -0.12 -1.65 4.52 -28.04 -0.13 -1.78 16 21 H 0.06 0.63 7.42 -51.93 -0.39 0.25 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.78 7.41 -51.93 -0.38 0.39 16 24 H 0.06 0.57 6.81 -51.93 -0.35 0.21 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.67 7.58 -51.93 -0.39 0.27 16 30 H 0.11 1.62 5.26 -52.49 -0.28 1.34 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.86 6.00 -51.93 -0.31 1.55 16 33 H 0.03 0.61 5.99 -51.93 -0.31 0.30 16 34 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.47 6.32 -51.93 -0.33 0.14 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.82 6.63 -51.93 -0.34 0.48 16 41 H 0.07 1.13 7.01 -51.93 -0.36 0.77 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -30.02 309.83 -8.73 -38.75 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.22 Total: -1.55 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.71 Total: -21.18 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.45 Total: -37.62 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.02 -8.73 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336691412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.841 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds