Wall clock time and date at job start Sun Mar 29 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 C 1.53000 * 109.47410 * 240.00053 * 2 1 3 5 5 C 1.50700 * 109.47454 * 120.00103 * 2 1 3 6 6 C 1.29827 * 118.54758 * 359.97438 * 5 2 1 7 7 C 1.50145 * 123.28013 * 180.11419 * 6 5 2 8 8 N 1.46839 * 110.27883 * 343.21205 * 7 6 5 9 9 C 1.46909 * 110.99825 * 287.54159 * 8 7 6 10 10 C 1.52998 * 109.46672 * 293.94947 * 9 8 7 11 11 C 1.50699 * 109.46917 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99938 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00304 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99693 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00149 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47379 * 59.99781 * 15 13 11 17 17 H 1.48497 * 109.47159 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.47150 * 299.99936 * 15 13 11 19 19 C 1.47241 * 110.20324 * 50.92522 * 8 7 6 20 20 C 1.50297 * 118.55558 * 180.23718 * 5 2 1 21 21 H 1.09004 * 109.47141 * 300.00252 * 1 2 3 22 22 H 1.09005 * 109.46704 * 59.99563 * 1 2 3 23 23 H 1.08995 * 109.47451 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46684 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47061 * 299.99846 * 3 2 1 26 26 H 1.08994 * 109.47137 * 60.00363 * 3 2 1 27 27 H 1.09003 * 109.47048 * 300.00347 * 4 2 1 28 28 H 1.09002 * 109.46959 * 59.99539 * 4 2 1 29 29 H 1.08993 * 109.47856 * 180.02562 * 4 2 1 30 30 H 1.08002 * 118.36271 * 0.40391 * 6 5 2 31 31 H 1.08997 * 109.33533 * 103.46105 * 7 6 5 32 32 H 1.09004 * 109.33459 * 223.13055 * 7 6 5 33 33 H 1.08991 * 109.47507 * 53.94955 * 9 8 7 34 34 H 1.09000 * 109.46643 * 173.95350 * 9 8 7 35 35 H 1.09004 * 109.47193 * 300.00020 * 10 9 8 36 36 H 1.08993 * 109.47677 * 60.00267 * 10 9 8 37 37 H 0.96996 * 120.00034 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.63743 * 50.89287 * 19 8 7 39 39 H 1.09004 * 109.63640 * 171.50000 * 19 8 7 40 40 H 1.08995 * 109.56219 * 43.50653 * 20 5 2 41 41 H 1.09003 * 109.24817 * 283.69071 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1640 -1.1926 2.0665 7 6 1.5461 -1.9164 3.3253 8 7 2.9513 -2.3380 3.2633 9 6 3.1251 -3.4541 2.3239 10 6 2.3978 -4.6891 2.8592 11 6 2.5766 -5.8341 1.8959 12 1 3.1512 -5.6947 0.9921 13 6 2.0067 -7.0597 2.1684 14 7 1.3066 -7.2293 3.2687 15 14 2.2278 -8.4788 0.9740 16 1 3.6742 -8.7807 0.8261 17 1 1.5220 -9.6776 1.4935 18 1 1.6623 -8.1061 -0.3477 19 6 3.8081 -1.1990 2.8939 20 6 3.5165 -0.8243 1.4386 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1299 -0.7217 -1.2491 30 1 0.1144 -1.0709 1.8432 31 1 1.4053 -1.2540 4.1793 32 1 0.9127 -2.7958 3.4423 33 1 2.7106 -3.1803 1.3538 34 1 4.1868 -3.6760 2.2160 35 1 2.8124 -4.9629 3.8295 36 1 1.3362 -4.4672 2.9673 37 1 0.9060 -8.0916 3.4606 38 1 3.5885 -0.3502 3.5415 39 1 4.8562 -1.4805 2.9968 40 1 3.9917 0.1289 1.2072 41 1 3.9137 -1.5960 0.7792 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336691412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:50 Heat of formation + Delta-G solvation = -18.495353 kcal Electronic energy + Delta-G solvation = -17719.695776 eV Core-core repulsion = 15212.242983 eV Total energy + Delta-G solvation = -2507.452793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.03884 -38.03748 -35.34794 -32.95365 -32.08645 -30.73615 -28.31268 -28.10973 -27.07455 -24.91291 -23.57859 -22.57832 -20.43730 -18.65841 -17.76224 -17.12662 -16.58309 -16.16412 -15.67371 -15.40777 -15.15615 -14.99065 -14.38408 -14.18079 -13.88979 -13.57478 -13.45307 -13.21930 -13.00859 -12.77082 -12.63934 -12.58133 -12.49433 -12.35824 -12.02892 -11.89845 -11.82906 -11.46631 -11.38822 -11.22381 -11.11485 -10.53519 -9.62584 -9.06992 -8.19743 -6.30913 1.34097 1.38548 1.41984 1.49914 2.39931 3.13287 3.18201 3.75109 3.77836 4.08692 4.14411 4.19106 4.34406 4.39244 4.44071 4.59503 4.67914 4.70876 4.75860 4.77706 4.85875 4.87923 4.89825 4.97867 5.02620 5.03376 5.06313 5.14217 5.17148 5.27429 5.39461 5.45440 5.47233 5.69477 5.71934 5.80983 6.05478 6.18654 6.33430 6.38185 6.85754 7.37733 8.92386 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.006284 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.354324 B = 4454.829477 C = 4840.437427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C -0.130 4.130 4 C -0.136 4.136 5 C -0.108 4.108 6 C -0.207 4.207 7 C 0.079 3.921 8 N -0.545 5.545 9 C 0.083 3.917 10 C 0.037 3.963 11 C -0.543 4.543 12 H 0.057 0.943 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.052 3.948 20 C -0.114 4.114 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.056 0.944 35 H -0.011 1.011 36 H -0.007 1.007 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 17.559 -6.864 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.035 4.035 3 C -0.187 4.187 4 C -0.194 4.194 5 C -0.108 4.108 6 C -0.226 4.226 7 C -0.049 4.049 8 N -0.267 5.267 9 C -0.044 4.044 10 C -0.001 4.001 11 C -0.582 4.582 12 H 0.075 0.925 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.076 4.076 20 C -0.152 4.152 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.007 0.993 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.544 17.264 -6.279 18.435 hybrid contribution -0.473 -0.981 -0.978 1.464 sum 1.071 16.282 -7.258 17.859 Atomic orbital electron populations 1.21945 0.94397 1.01195 1.02357 1.19651 0.95521 0.95898 0.92471 1.21796 1.01321 0.93423 1.02195 1.21824 1.01203 0.99407 0.96916 1.20998 0.95007 0.98734 0.96062 1.22955 1.00609 1.01046 0.98011 1.21046 0.89365 0.98333 0.96109 1.62712 1.06603 1.07594 1.49811 1.21885 0.99137 0.90562 0.92847 1.18925 0.94154 0.91991 0.94996 1.21567 1.32867 0.96784 1.06965 0.92494 1.25945 0.94672 1.01717 0.97190 1.70104 1.35297 1.25078 1.26670 0.85519 0.78777 0.77951 0.78916 1.19052 1.20641 1.19289 1.22340 0.97685 0.93076 0.94515 1.21005 0.93320 1.02605 0.98315 0.92074 0.91117 0.93961 0.92016 0.91323 0.92618 0.94712 0.90975 0.92364 0.86557 0.89095 0.92240 0.95789 0.92594 0.99267 0.98845 0.92755 0.89665 0.90156 0.88492 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 7.09 71.98 0.51 -2.55 16 2 C -0.04 -0.79 0.85 -52.93 -0.05 -0.84 16 3 C -0.13 -2.26 8.24 71.98 0.59 -1.67 16 4 C -0.14 -3.08 8.30 71.98 0.60 -2.49 16 5 C -0.11 -2.96 4.08 -15.41 -0.06 -3.03 16 6 C -0.21 -6.46 8.43 26.68 0.22 -6.24 16 7 C 0.08 2.83 5.83 85.39 0.50 3.33 16 8 N -0.54 -20.62 5.03 -900.92 -4.53 -25.15 16 9 C 0.08 3.70 4.00 86.30 0.35 4.05 16 10 C 0.04 2.04 4.92 29.85 0.15 2.19 16 11 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 12 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 13 C 0.00 0.16 5.46 84.66 0.46 0.62 16 14 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 15 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 C 0.05 1.49 6.03 86.26 0.52 2.01 16 20 C -0.11 -3.00 4.52 29.75 0.13 -2.86 16 21 H 0.06 1.26 7.42 -2.38 -0.02 1.24 16 22 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.04 1.06 7.41 -2.39 -0.02 1.04 16 24 H 0.06 1.01 6.81 -2.39 -0.02 0.99 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 30 H 0.12 3.44 5.26 -2.91 -0.02 3.42 16 31 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 2.51 6.00 -2.39 -0.01 2.50 16 33 H 0.02 1.08 5.99 -2.39 -0.01 1.06 16 34 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 35 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 36 H -0.01 -0.40 6.32 -2.39 -0.02 -0.41 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 39 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.10 2.01 6.63 -2.39 -0.02 1.99 16 41 H 0.06 1.81 7.01 -2.39 -0.02 1.79 16 Total: -1.00 -65.66 309.83 2.91 -62.75 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.97 Total: 12.34 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 4.16 Total: -39.27 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -4.25 Total: -83.03 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.66 2.91 -62.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336691412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.253 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds