Wall clock time and date at job start Sun Mar 29 2020 21:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00172 * 2 1 4 4 H 1.48501 * 109.46843 * 269.99811 * 3 2 1 5 5 H 1.48496 * 109.46830 * 29.99656 * 3 2 1 6 6 H 1.48502 * 109.47150 * 149.99784 * 3 2 1 7 7 C 1.37874 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47237 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46949 * 180.02562 * 10 9 7 12 12 C 1.46892 * 110.99866 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.11098 * 41.80273 * 12 11 10 14 14 C 1.54443 * 110.08328 * 163.34705 * 12 11 10 15 15 C 1.54945 * 104.21414 * 142.73089 * 14 12 11 16 16 C 1.55035 * 102.83001 * 322.41164 * 15 14 12 17 17 C 1.53239 * 110.07911 * 280.26253 * 12 11 10 18 18 C 1.53237 * 110.83083 * 1.42896 * 17 12 11 19 19 C 1.54442 * 106.34962 * 120.63012 * 18 17 12 20 20 C 1.54948 * 104.21369 * 23.52279 * 19 18 17 21 21 C 1.53652 * 110.58507 * 120.24518 * 17 12 11 22 22 H 0.97001 * 119.99657 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47282 * 60.00303 * 9 7 2 24 24 H 1.09001 * 109.47497 * 300.00203 * 9 7 2 25 25 H 1.09003 * 109.46571 * 60.00071 * 10 9 7 26 26 H 1.08993 * 109.47097 * 299.99946 * 10 9 7 27 27 H 1.00900 * 110.99739 * 56.04997 * 11 10 9 28 28 H 1.08999 * 110.47844 * 24.04363 * 14 12 11 29 29 H 1.08999 * 110.48054 * 261.41994 * 14 12 11 30 30 H 1.09004 * 110.73611 * 80.74948 * 15 14 12 31 31 H 1.09003 * 110.73799 * 204.07380 * 15 14 12 32 32 H 1.09003 * 110.51205 * 156.03973 * 16 15 14 33 33 H 1.08992 * 110.51797 * 278.62618 * 16 15 14 34 34 H 1.08998 * 110.07495 * 239.85349 * 18 17 12 35 35 H 1.09005 * 110.07524 * 1.40551 * 18 17 12 36 36 H 1.08998 * 110.47975 * 264.83793 * 19 18 17 37 37 H 1.09006 * 110.48052 * 142.20773 * 19 18 17 38 38 H 1.08994 * 110.74287 * 204.06891 * 20 19 18 39 39 H 1.09000 * 110.73580 * 80.73657 * 20 19 18 40 40 H 1.09001 * 110.51330 * 334.47000 * 21 17 12 41 41 H 1.09002 * 110.51825 * 97.19176 * 21 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 2.4351 -6.0759 0.0005 13 1 3.2634 -5.8871 0.6834 14 6 1.6885 -7.3626 0.4156 15 6 2.3148 -8.4686 -0.4707 16 6 2.5382 -7.7417 -1.8217 17 6 2.9665 -6.3233 -1.4153 18 6 2.4049 -5.2890 -2.3966 19 6 3.6230 -4.5549 -2.9988 20 6 4.7934 -5.5556 -2.8271 21 6 4.4975 -6.1978 -1.4474 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8906 26 1 2.8719 -3.6044 -0.8894 27 1 0.8746 -4.9841 -0.7817 28 1 0.6222 -7.2678 0.2106 29 1 1.8573 -7.5780 1.4706 30 1 3.2631 -8.8070 -0.0530 31 1 1.6247 -9.3037 -0.5910 32 1 3.3279 -8.2304 -2.3924 33 1 1.6134 -7.7135 -2.3978 34 1 1.8416 -5.7883 -3.1849 35 1 1.7649 -4.5817 -1.8691 36 1 3.8238 -3.6351 -2.4495 37 1 3.4557 -4.3410 -4.0546 38 1 5.7495 -5.0326 -2.8124 39 1 4.7761 -6.3086 -3.6150 40 1 4.8446 -5.5502 -0.6422 41 1 4.9630 -7.1809 -1.3758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340360679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:56 Heat of formation + Delta-G solvation = -13.398966 kcal Electronic energy + Delta-G solvation = -17904.371653 eV Core-core repulsion = 15397.139856 eV Total energy + Delta-G solvation = -2507.231797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33727 -35.20754 -34.79524 -32.66544 -29.46841 -28.59462 -28.46790 -26.36182 -23.86311 -22.45681 -21.41610 -20.14844 -19.79787 -18.10573 -16.50594 -16.28121 -15.62293 -14.73787 -14.45604 -14.17374 -13.73004 -13.54883 -13.03839 -12.60853 -12.32643 -12.20258 -11.86727 -11.22632 -11.08259 -10.97080 -10.92048 -10.89288 -10.80381 -10.64257 -10.47185 -10.43268 -10.27096 -10.22351 -10.02934 -9.87330 -9.28002 -9.10473 -8.32599 -7.61311 -5.97273 -3.99456 3.33144 3.39474 3.42804 4.44970 4.59296 4.61031 4.65920 4.97381 5.15149 5.21166 5.28538 5.38787 5.54235 5.61275 5.65509 5.67957 5.75834 5.78572 5.86023 5.95113 6.00514 6.01587 6.07427 6.18819 6.23384 6.28767 6.38823 6.42238 6.46005 6.48571 6.50382 6.61067 6.73935 7.06143 7.58353 7.77523 7.88568 8.03571 8.13469 8.47429 9.07988 9.64192 11.14195 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032032 B = 0.006219 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.908846 B = 4501.198178 C = 5011.001096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.054 3.946 11 N -0.686 5.686 12 C 0.093 3.907 13 H 0.076 0.924 14 C -0.114 4.114 15 C -0.126 4.126 16 C -0.108 4.108 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.109 4.109 22 H 0.260 0.740 23 H 0.012 0.988 24 H 0.023 0.977 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.339 0.661 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -15.246 -4.298 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.074 4.074 11 N -0.319 5.319 12 C -0.018 4.018 13 H 0.094 0.906 14 C -0.152 4.152 15 C -0.164 4.164 16 C -0.146 4.146 17 C -0.096 4.096 18 C -0.181 4.181 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.147 4.147 22 H 0.070 0.930 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.162 0.838 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.257 -15.107 -3.598 16.743 hybrid contribution 0.794 1.006 -0.953 1.597 sum 7.050 -14.101 -4.551 16.409 Atomic orbital electron populations 1.69974 1.06015 1.26504 1.50796 1.24993 0.94812 0.99142 0.95386 0.86619 0.79871 0.83616 0.78036 1.20732 1.21226 1.19910 1.21164 0.92918 0.91014 1.50636 0.92841 1.19065 0.94053 0.90586 0.97508 1.22367 0.97336 0.88294 0.99379 1.60777 1.19397 1.02167 1.49548 1.22223 0.94630 0.91209 0.93733 0.90582 1.22413 1.00226 0.93567 0.98959 1.22526 1.00328 0.97591 0.95952 1.22423 1.00661 0.94621 0.96861 1.21992 0.95499 0.95055 0.97056 1.22782 0.98755 0.98423 0.98148 1.22433 0.94625 0.98723 1.00410 1.22525 0.98311 0.98219 0.97054 1.22448 0.94654 1.00104 0.97449 0.93047 0.96993 0.95865 0.92772 0.94832 0.83760 0.91126 0.91874 0.91917 0.92000 0.92158 0.91806 0.92338 0.88670 0.90723 0.92255 0.92097 0.92164 0.91634 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.05 1.13 4.54 -3.82 -0.02 1.11 16 11 N -0.69 -12.28 6.05 -105.79 -0.64 -12.92 16 12 C 0.09 1.38 2.84 -66.84 -0.19 1.19 16 13 H 0.08 1.18 7.14 -51.93 -0.37 0.81 16 14 C -0.11 -1.45 6.55 -24.95 -0.16 -1.61 16 15 C -0.13 -1.35 6.91 -24.63 -0.17 -1.52 16 16 C -0.11 -1.23 5.74 -25.33 -0.15 -1.37 16 17 C -0.09 -1.23 0.74 -153.59 -0.11 -1.35 16 18 C -0.14 -2.08 4.85 -25.85 -0.13 -2.21 16 19 C -0.12 -1.78 6.52 -24.95 -0.16 -1.94 16 20 C -0.12 -1.52 6.91 -24.63 -0.17 -1.69 16 21 C -0.11 -1.36 5.74 -25.32 -0.15 -1.51 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 1.17 8.09 -51.93 -0.42 0.75 16 26 H 0.03 0.68 4.27 -51.93 -0.22 0.46 16 27 H 0.34 5.98 6.40 -39.29 -0.25 5.73 16 28 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.64 7.64 -51.93 -0.40 0.24 16 33 H 0.06 0.73 7.49 -51.93 -0.39 0.34 16 34 H 0.06 0.79 7.33 -51.93 -0.38 0.41 16 35 H 0.10 1.62 3.30 -51.93 -0.17 1.45 16 36 H 0.07 1.23 6.61 -51.93 -0.34 0.88 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.89 7.49 -51.93 -0.39 0.50 16 41 H 0.06 0.68 7.64 -51.93 -0.40 0.28 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -29.17 304.00 -9.38 -38.54 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.07 Total: 3.24 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -1.96 Total: -23.87 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.10 Total: -39.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.17 -9.38 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340360679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.145 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds