Wall clock time and date at job start Sun Mar 29 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46696 * 2 1 4 4 C 1.31012 * 119.99459 * 127.15300 * 3 2 1 5 5 C 1.50697 * 119.99813 * 7.65442 * 4 3 2 6 6 C 1.52995 * 109.47082 * 127.15333 * 5 4 3 7 7 N 1.46904 * 109.47326 * 174.83679 * 6 5 4 8 8 C 1.46907 * 110.99684 * 71.71791 * 7 6 5 9 9 C 1.50697 * 109.46730 * 190.00186 * 8 7 6 10 10 H 1.08003 * 120.00203 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99844 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00031 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99975 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47515 * 59.99439 * 13 11 9 15 15 H 1.48499 * 109.47104 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47012 * 299.99506 * 13 11 9 17 17 C 1.46896 * 111.00107 * 195.67105 * 7 6 5 18 18 C 1.53003 * 109.46782 * 75.35678 * 17 7 6 19 19 C 1.52996 * 117.49764 * 245.48051 * 18 17 7 20 20 C 1.52999 * 60.00385 * 252.51209 * 19 18 17 21 21 H 1.08994 * 109.47687 * 59.99578 * 1 2 3 22 22 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46953 * 299.99516 * 1 2 3 24 24 H 1.09004 * 109.46953 * 240.00484 * 2 1 3 25 25 H 1.08994 * 109.47687 * 120.00422 * 2 1 3 26 26 H 1.07994 * 120.00828 * 307.15608 * 3 2 1 27 27 H 1.07994 * 119.99704 * 187.64988 * 4 3 2 28 28 H 1.08996 * 109.47368 * 7.14639 * 5 4 3 29 29 H 1.09001 * 109.46475 * 247.14552 * 5 4 3 30 30 H 1.09001 * 109.47663 * 54.83071 * 6 5 4 31 31 H 1.09001 * 109.46965 * 294.83534 * 6 5 4 32 32 H 1.08991 * 109.47139 * 310.00241 * 8 7 6 33 33 H 1.08997 * 109.46912 * 70.00242 * 8 7 6 34 34 H 0.97003 * 120.00392 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47741 * 315.35714 * 17 7 6 36 36 H 1.09000 * 109.47466 * 195.35659 * 17 7 6 37 37 H 1.08996 * 115.55061 * 31.19436 * 18 17 7 38 38 H 1.08997 * 117.50266 * 0.02562 * 19 18 17 39 39 H 1.08999 * 117.50023 * 145.02563 * 19 18 17 40 40 H 1.08996 * 117.50121 * 252.51073 * 20 19 18 41 41 H 1.09000 * 117.49764 * 107.48358 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.8966 1.8100 0.9044 5 6 3.5192 0.8013 1.8348 6 6 5.0426 0.9331 1.7844 7 7 5.6450 0.0371 2.7805 8 6 5.5218 -1.3675 2.3679 9 6 5.9226 -2.2638 3.5110 10 1 6.2378 -1.8332 4.4500 11 6 5.8880 -3.6336 3.3579 12 7 5.5047 -4.1579 2.2144 13 14 6.3841 -4.7447 4.7751 14 1 5.4955 -4.4911 5.9376 15 1 6.2597 -6.1645 4.3580 16 1 7.7911 -4.4619 5.1566 17 6 7.0489 0.3920 3.0272 18 6 7.1117 1.6532 3.8912 19 6 7.7061 2.9135 3.2593 20 6 8.4946 2.1460 4.3224 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6797 2.1183 -0.7453 27 1 3.1629 2.8536 0.9829 28 1 3.2310 -0.2037 1.5266 29 1 3.1723 0.9829 2.8521 30 1 5.3257 1.9627 2.0035 31 1 5.3980 0.6624 0.7901 32 1 4.4889 -1.5748 2.0885 33 1 6.1734 -1.5538 1.5142 34 1 5.4799 -5.1216 2.1067 35 1 7.5493 0.5774 2.0769 36 1 7.5455 -0.4284 3.5453 37 1 6.2895 1.7824 4.5949 38 1 8.0520 2.8443 2.2280 39 1 7.2748 3.8722 3.5471 40 1 8.5820 2.5998 5.3095 41 1 9.3595 1.5716 3.9905 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342204969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:29 Heat of formation + Delta-G solvation = 28.714502 kcal Electronic energy + Delta-G solvation = -16941.987780 eV Core-core repulsion = 14436.582160 eV Total energy + Delta-G solvation = -2505.405620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.99144 -36.59440 -35.15858 -32.59073 -31.42170 -28.41957 -27.35626 -24.88867 -23.05425 -22.66131 -22.01046 -20.48302 -19.55459 -17.96685 -16.51749 -15.48727 -15.33614 -14.90256 -14.22937 -14.11846 -13.87081 -13.65839 -13.19462 -12.83464 -12.27635 -11.98184 -11.79996 -11.68161 -11.61223 -11.31549 -11.16030 -10.87793 -10.78006 -10.66179 -10.52771 -10.47361 -10.06080 -9.97497 -9.50130 -9.41075 -9.12223 -8.61831 -8.39753 -7.19346 -6.00021 -4.00902 2.49398 3.35050 3.39038 3.42215 4.16165 4.44874 4.81293 5.05280 5.20623 5.28917 5.30095 5.35497 5.42846 5.51700 5.58486 5.69722 5.81904 5.85184 5.91948 5.97552 6.00387 6.10169 6.15087 6.20491 6.30862 6.35872 6.37668 6.43722 6.52316 6.60379 6.72485 6.85697 7.01084 7.18537 7.36289 7.40345 7.84888 8.15067 8.27365 8.60580 9.07091 9.63056 11.10690 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.008250 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.497047 B = 3393.266931 C = 5425.611658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.170 4.170 4 C -0.148 4.148 5 C -0.097 4.097 6 C 0.065 3.935 7 N -0.535 5.535 8 C 0.192 3.808 9 C -0.507 4.507 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.091 3.909 18 C -0.130 4.130 19 C -0.191 4.191 20 C -0.185 4.185 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.020 0.980 32 H 0.033 0.967 33 H -0.012 1.012 34 H 0.261 0.739 35 H 0.019 0.981 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 11.575 -1.947 12.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.188 4.188 4 C -0.166 4.166 5 C -0.134 4.134 6 C -0.063 4.063 7 N -0.259 5.259 8 C 0.067 3.933 9 C -0.546 4.546 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.037 4.037 18 C -0.149 4.149 19 C -0.229 4.229 20 C -0.222 4.222 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.996 11.433 -1.604 11.927 hybrid contribution 0.718 -0.647 -0.152 0.978 sum -2.279 10.786 -1.756 11.163 Atomic orbital electron populations 1.21673 0.95621 1.01411 1.01324 1.20826 0.95589 0.94814 1.03402 1.22724 0.99634 0.97483 0.98948 1.22887 0.97411 0.99099 0.97220 1.20864 0.95089 0.98529 0.98936 1.21905 0.93827 0.96927 0.93661 1.62039 1.14796 1.05447 1.43657 1.19747 0.96941 0.81551 0.95048 1.21157 1.44028 0.90413 0.99009 0.91882 1.24976 0.95600 0.98170 0.95805 1.69947 1.48060 1.11726 1.24080 0.86596 0.79070 0.79382 0.82574 1.20186 1.21414 1.20310 1.21562 0.90464 0.95413 0.96272 1.22457 0.95975 0.94543 1.01947 1.23003 1.05524 0.96394 0.97930 1.22893 0.96008 1.04435 0.98900 0.93243 0.92698 0.92855 0.91555 0.89843 0.88035 0.87925 0.90079 0.90718 0.92141 0.96159 0.94859 0.99424 0.92937 0.96264 0.89215 0.87397 0.89456 0.89581 0.89338 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.32 16 2 C -0.11 -1.53 6.02 -27.88 -0.17 -1.69 16 3 C -0.17 -2.30 9.51 -36.03 -0.34 -2.64 16 4 C -0.15 -2.12 9.51 -36.03 -0.34 -2.46 16 5 C -0.10 -1.66 5.26 -27.89 -0.15 -1.81 16 6 C 0.07 1.20 4.78 -3.82 -0.02 1.19 16 7 N -0.54 -11.50 4.39 -236.07 -1.04 -12.54 16 8 C 0.19 4.98 4.57 -4.97 -0.02 4.96 16 9 C -0.51 -14.18 8.24 -34.44 -0.28 -14.46 16 10 H 0.06 1.75 7.30 -52.48 -0.38 1.36 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -26.62 13.28 55.43 0.74 -25.88 16 13 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.09 1.79 5.08 -3.82 -0.02 1.77 16 18 C -0.13 -2.12 5.16 -90.62 -0.47 -2.59 16 19 C -0.19 -2.60 10.04 -26.73 -0.27 -2.87 16 20 C -0.18 -2.55 10.25 -26.73 -0.27 -2.82 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 1.32 5.30 -51.93 -0.28 1.05 16 26 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.10 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.08 1.54 3.95 -51.93 -0.20 1.33 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.01 7.22 -51.93 -0.37 0.64 16 31 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.03 0.91 6.48 -51.93 -0.34 0.58 16 33 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 36 H 0.09 1.96 6.58 -51.93 -0.34 1.62 16 37 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -28.65 328.79 -9.81 -38.46 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.36 Total: 1.62 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -2.08 Total: -23.27 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.30 Total: -38.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.65 -9.81 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342204969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.177 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds