Wall clock time and date at job start Sun Mar 29 2020 22:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46696 * 2 1 4 4 C 1.31012 * 119.99459 * 127.15300 * 3 2 1 5 5 C 1.50697 * 119.99813 * 7.65442 * 4 3 2 6 6 C 1.52995 * 109.47082 * 127.15333 * 5 4 3 7 7 N 1.46904 * 109.47326 * 174.83679 * 6 5 4 8 8 C 1.46907 * 110.99684 * 71.71791 * 7 6 5 9 9 C 1.50697 * 109.46730 * 190.00186 * 8 7 6 10 10 H 1.08003 * 120.00203 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99844 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00031 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99975 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47515 * 59.99439 * 13 11 9 15 15 H 1.48499 * 109.47104 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47012 * 299.99506 * 13 11 9 17 17 C 1.46896 * 111.00107 * 195.67105 * 7 6 5 18 18 C 1.53003 * 109.46782 * 75.35678 * 17 7 6 19 19 C 1.52996 * 117.49764 * 245.48051 * 18 17 7 20 20 C 1.52999 * 60.00385 * 252.51209 * 19 18 17 21 21 H 1.08994 * 109.47687 * 59.99578 * 1 2 3 22 22 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46953 * 299.99516 * 1 2 3 24 24 H 1.09004 * 109.46953 * 240.00484 * 2 1 3 25 25 H 1.08994 * 109.47687 * 120.00422 * 2 1 3 26 26 H 1.07994 * 120.00828 * 307.15608 * 3 2 1 27 27 H 1.07994 * 119.99704 * 187.64988 * 4 3 2 28 28 H 1.08996 * 109.47368 * 7.14639 * 5 4 3 29 29 H 1.09001 * 109.46475 * 247.14552 * 5 4 3 30 30 H 1.09001 * 109.47663 * 54.83071 * 6 5 4 31 31 H 1.09001 * 109.46965 * 294.83534 * 6 5 4 32 32 H 1.08991 * 109.47139 * 310.00241 * 8 7 6 33 33 H 1.08997 * 109.46912 * 70.00242 * 8 7 6 34 34 H 0.97003 * 120.00392 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47741 * 315.35714 * 17 7 6 36 36 H 1.09000 * 109.47466 * 195.35659 * 17 7 6 37 37 H 1.08996 * 115.55061 * 31.19436 * 18 17 7 38 38 H 1.08997 * 117.50266 * 0.02562 * 19 18 17 39 39 H 1.08999 * 117.50023 * 145.02563 * 19 18 17 40 40 H 1.08996 * 117.50121 * 252.51073 * 20 19 18 41 41 H 1.09000 * 117.49764 * 107.48358 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.8966 1.8100 0.9044 5 6 3.5192 0.8013 1.8348 6 6 5.0426 0.9331 1.7844 7 7 5.6450 0.0371 2.7805 8 6 5.5218 -1.3675 2.3679 9 6 5.9226 -2.2638 3.5110 10 1 6.2378 -1.8332 4.4500 11 6 5.8880 -3.6336 3.3579 12 7 5.5047 -4.1579 2.2144 13 14 6.3841 -4.7447 4.7751 14 1 5.4955 -4.4911 5.9376 15 1 6.2597 -6.1645 4.3580 16 1 7.7911 -4.4619 5.1566 17 6 7.0489 0.3920 3.0272 18 6 7.1117 1.6532 3.8912 19 6 7.7061 2.9135 3.2593 20 6 8.4946 2.1460 4.3224 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6797 2.1183 -0.7453 27 1 3.1629 2.8536 0.9829 28 1 3.2310 -0.2037 1.5266 29 1 3.1723 0.9829 2.8521 30 1 5.3257 1.9627 2.0035 31 1 5.3980 0.6624 0.7901 32 1 4.4889 -1.5748 2.0885 33 1 6.1734 -1.5538 1.5142 34 1 5.4799 -5.1216 2.1067 35 1 7.5493 0.5774 2.0769 36 1 7.5455 -0.4284 3.5453 37 1 6.2895 1.7824 4.5949 38 1 8.0520 2.8443 2.2280 39 1 7.2748 3.8722 3.5471 40 1 8.5820 2.5998 5.3095 41 1 9.3595 1.5716 3.9905 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342204969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:28 Heat of formation + Delta-G solvation = 13.776161 kcal Electronic energy + Delta-G solvation = -16942.635555 eV Core-core repulsion = 14436.582160 eV Total energy + Delta-G solvation = -2506.053395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48791 -37.79179 -36.61775 -34.65097 -32.74102 -29.86442 -29.20968 -26.55410 -24.53058 -24.05171 -23.12906 -22.05702 -21.06461 -19.15094 -18.59496 -16.87100 -16.73475 -16.69767 -15.76658 -15.48832 -15.34404 -14.93282 -14.59891 -14.32213 -13.91916 -13.60386 -13.40940 -13.11544 -12.91119 -12.80316 -12.60819 -12.47556 -12.29687 -12.13752 -11.99662 -11.89600 -11.72056 -11.30813 -11.17398 -10.96901 -10.68218 -10.55423 -9.78518 -9.00437 -8.19472 -6.29075 1.36870 1.40245 1.43431 1.51293 2.40464 2.96629 3.12260 3.29659 3.88605 4.00731 4.13053 4.15495 4.22321 4.26231 4.40618 4.44409 4.52244 4.52831 4.75081 4.75699 4.78032 4.81519 4.91120 4.93129 5.05020 5.07644 5.13611 5.23870 5.27475 5.29756 5.31907 5.35821 5.37405 5.45670 5.66676 5.80033 6.05374 6.09355 6.39709 6.68417 6.87350 7.40190 8.91353 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.008250 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.497047 B = 3393.266931 C = 5425.611658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C -0.160 4.160 4 C -0.157 4.157 5 C -0.091 4.091 6 C 0.070 3.930 7 N -0.540 5.540 8 C 0.210 3.790 9 C -0.523 4.523 10 H 0.062 0.938 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.268 1.268 17 C 0.095 3.905 18 C -0.153 4.153 19 C -0.171 4.171 20 C -0.173 4.173 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.007 0.993 32 H 0.010 0.990 33 H -0.047 1.047 34 H 0.264 0.736 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 13.433 -1.311 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.178 4.178 4 C -0.176 4.176 5 C -0.128 4.128 6 C -0.058 4.058 7 N -0.263 5.263 8 C 0.083 3.917 9 C -0.561 4.561 10 H 0.080 0.920 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.033 4.033 18 C -0.172 4.172 19 C -0.208 4.208 20 C -0.211 4.211 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.028 0.972 33 H -0.029 1.029 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.914 13.315 -0.963 13.664 hybrid contribution 0.689 -1.214 -0.403 1.453 sum -2.225 12.101 -1.366 12.379 Atomic orbital electron populations 1.21638 0.93643 1.01879 1.02368 1.20862 0.97405 0.95234 1.01854 1.22953 0.98661 0.97319 0.98833 1.22843 0.98162 0.99441 0.97132 1.20738 0.94346 0.98322 0.99428 1.21962 0.94508 0.97273 0.92084 1.62021 1.16351 1.03557 1.44399 1.19368 0.94486 0.84425 0.93376 1.21443 1.44119 0.91227 0.99338 0.92017 1.25890 0.95362 0.99749 0.98556 1.70081 1.48950 1.12166 1.26203 0.85481 0.79110 0.77202 0.79112 1.19354 1.20804 1.19252 1.21496 0.88917 0.96362 0.96535 1.22187 0.97823 0.94374 1.02800 1.23082 1.03798 0.95815 0.98058 1.23003 0.94249 1.03622 1.00179 0.91280 0.92630 0.92632 0.91946 0.92680 0.85165 0.85428 0.92724 0.91406 0.89579 0.97469 0.97206 1.02907 0.92748 0.96441 0.92200 0.87968 0.89253 0.87272 0.87285 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.89 71.98 0.71 -2.40 16 2 C -0.12 -3.28 6.02 29.85 0.18 -3.10 16 3 C -0.16 -4.09 9.51 25.63 0.24 -3.84 16 4 C -0.16 -4.33 9.51 25.63 0.24 -4.08 16 5 C -0.09 -3.20 5.26 29.85 0.16 -3.04 16 6 C 0.07 2.61 4.78 86.30 0.41 3.02 16 7 N -0.54 -24.03 4.39 -900.80 -3.95 -27.98 16 8 C 0.21 11.51 4.57 85.55 0.39 11.90 16 9 C -0.52 -30.29 8.24 25.60 0.21 -30.08 16 10 H 0.06 3.51 7.30 -2.91 -0.02 3.49 16 11 C 0.00 0.14 5.46 84.66 0.46 0.60 16 12 N -0.93 -57.07 13.28 21.45 0.28 -56.79 16 13 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C 0.10 3.82 5.08 86.31 0.44 4.26 16 18 C -0.15 -4.80 5.16 -10.79 -0.06 -4.86 16 19 C -0.17 -4.14 10.04 30.59 0.31 -3.84 16 20 C -0.17 -4.36 10.25 30.60 0.31 -4.05 16 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.05 1.86 5.30 -2.39 -0.01 1.85 16 26 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 27 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 28 H 0.05 2.21 3.95 -2.39 -0.01 2.20 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 2.77 7.22 -2.39 -0.02 2.75 16 31 H 0.01 0.28 8.06 -2.39 -0.02 0.26 16 32 H 0.01 0.58 6.48 -2.39 -0.02 0.57 16 33 H -0.05 -2.82 8.12 -2.39 -0.02 -2.84 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.02 0.69 7.74 -2.39 -0.02 0.67 16 36 H 0.06 2.72 6.58 -2.39 -0.02 2.70 16 37 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.09 2.16 8.04 -2.39 -0.02 2.14 16 39 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -63.75 328.79 3.34 -60.42 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.96 Total: 16.85 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.02 Total: -39.50 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -3.67 Total: -84.77 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -63.75 3.34 -60.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342204969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.192 kcal (2) G-P(sol) polarization free energy of solvation -63.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds