Wall clock time and date at job start Sun Mar 29 2020 21:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47084 * 2 1 4 4 C 1.46898 * 111.00228 * 301.68599 * 3 2 1 5 5 C 1.50700 * 109.47057 * 293.95437 * 4 3 2 6 6 H 1.08002 * 120.00117 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99842 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99716 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47176 * 89.99892 * 9 7 5 11 11 H 1.48504 * 109.46626 * 209.99775 * 9 7 5 12 12 H 1.48503 * 109.47248 * 329.99330 * 9 7 5 13 13 C 1.46900 * 110.99899 * 65.64175 * 3 2 1 14 14 C 1.50706 * 109.47097 * 75.60913 * 13 3 2 15 15 N 1.30496 * 125.65126 * 267.23372 * 14 13 3 16 16 C 1.34132 * 109.25500 * 179.89610 * 15 14 13 17 17 C 1.34667 * 108.01752 * 0.36470 * 16 15 14 18 18 C 1.50707 * 126.58902 * 179.81691 * 17 16 15 19 19 N 1.35042 * 125.64799 * 87.53986 * 14 13 3 20 20 C 1.46509 * 126.39660 * 359.97438 * 19 14 13 21 21 H 1.08996 * 109.47415 * 182.03030 * 1 2 3 22 22 H 1.09003 * 109.46911 * 302.02752 * 1 2 3 23 23 H 1.08997 * 109.47239 * 62.02294 * 1 2 3 24 24 H 1.08997 * 109.47690 * 120.00028 * 2 1 3 25 25 H 1.09002 * 109.47288 * 240.00627 * 2 1 3 26 26 H 1.09001 * 109.47003 * 53.95158 * 4 3 2 27 27 H 1.08994 * 109.47173 * 173.95619 * 4 3 2 28 28 H 0.97003 * 119.99757 * 179.97438 * 8 7 5 29 29 H 1.08991 * 109.46984 * 195.60987 * 13 3 2 30 30 H 1.08997 * 109.46913 * 315.61208 * 13 3 2 31 31 H 1.08001 * 125.99170 * 180.19150 * 16 15 14 32 32 H 1.09008 * 109.47031 * 269.96196 * 18 17 16 33 33 H 1.08998 * 109.47111 * 29.95711 * 18 17 16 34 34 H 1.08989 * 109.47181 * 149.96180 * 18 17 16 35 35 H 1.09001 * 109.47032 * 90.00043 * 20 19 14 36 36 H 1.08999 * 109.46736 * 209.99987 * 20 19 14 37 37 H 1.08995 * 109.46710 * 329.99500 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5160 2.1215 -1.1670 5 6 2.1036 1.5335 -2.4240 6 1 2.7835 0.6967 -2.3621 7 6 1.7731 2.0639 -3.6531 8 7 2.2863 1.5511 -4.7500 9 14 0.5977 3.5118 -3.7599 10 1 1.3675 4.7801 -3.6972 11 1 -0.1495 3.4490 -5.0418 12 1 -0.3596 3.4570 -2.6259 13 6 1.6618 2.0699 1.2494 14 6 2.5624 1.5927 2.3595 15 7 2.3046 0.6104 3.1790 16 6 3.3289 0.4663 4.0329 17 6 4.2531 1.3998 3.7361 18 6 5.5695 1.6154 4.4374 19 7 3.7674 2.1147 2.6748 20 6 4.4307 3.2367 2.0058 21 1 -0.3634 -1.0270 0.0364 22 1 -0.3633 0.5450 0.8713 23 1 -0.3633 0.4821 -0.9075 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 0.4293 2.0450 -1.2036 27 1 1.8040 3.1697 -1.0871 28 1 2.0535 1.9240 -5.6147 29 1 1.7817 3.1456 1.1212 30 1 0.6251 1.8473 1.5016 31 1 3.3989 -0.2677 4.8220 32 1 5.4338 2.3230 5.2555 33 1 5.9296 0.6662 4.8342 34 1 6.2971 2.0130 3.7301 35 1 4.1416 4.1701 2.4889 36 1 5.5115 3.1122 2.0731 37 1 4.1325 3.2624 0.9577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342793680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:54 Heat of formation + Delta-G solvation = 66.108367 kcal Electronic energy + Delta-G solvation = -17261.922828 eV Core-core repulsion = 14654.598384 eV Total energy + Delta-G solvation = -2607.324444 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85934 -37.31540 -33.81237 -32.67361 -31.97951 -29.70517 -28.78370 -26.77788 -26.16390 -24.32280 -22.72658 -20.63082 -19.76703 -18.87797 -16.80101 -16.33105 -15.82778 -15.09405 -14.60922 -14.32657 -14.06788 -13.61278 -13.18355 -13.07051 -12.84257 -12.51735 -12.50050 -12.26914 -12.21200 -11.77946 -11.56167 -11.39051 -10.97763 -10.59506 -10.51480 -9.94670 -9.89592 -9.63130 -9.30683 -9.27867 -8.59048 -7.94971 -7.36485 -6.06872 -4.04117 2.24864 3.03469 3.24975 3.33459 3.34584 3.39658 4.39227 4.69852 4.86324 4.92806 5.07655 5.15451 5.23826 5.26764 5.41286 5.47491 5.61887 5.68254 5.80356 5.82690 5.94268 6.00483 6.13484 6.20414 6.49855 6.58825 6.65591 6.86284 6.97660 7.03400 7.11113 7.44230 7.55791 7.88282 8.00767 8.42956 8.63632 9.02620 9.54436 11.06291 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.006513 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.570662 B = 4298.190131 C = 4650.467679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.062 3.938 3 N -0.523 5.523 4 C 0.158 3.842 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.125 3.875 14 C 0.236 3.764 15 N -0.492 5.492 16 C -0.031 4.031 17 C -0.043 4.043 18 C -0.071 4.071 19 N -0.446 5.446 20 C 0.070 3.930 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.000 1.000 27 H 0.020 0.980 28 H 0.263 0.737 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 3.112 15.693 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.066 4.066 3 N -0.247 5.247 4 C 0.032 3.968 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.005 4.005 14 C -0.027 4.027 15 N -0.211 5.211 16 C -0.179 4.179 17 C -0.158 4.158 18 C -0.129 4.129 19 N -0.128 5.128 20 C -0.073 4.073 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.017 0.983 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.180 0.820 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.958 2.779 15.364 15.891 hybrid contribution -0.657 1.313 -0.173 1.478 sum 2.301 4.092 15.192 15.900 Atomic orbital electron populations 1.22331 0.99188 1.01285 1.01540 1.21985 0.92301 0.90123 1.02174 1.62132 1.59640 1.02621 1.00275 1.20276 0.94107 0.93503 0.88897 1.20986 1.27744 1.17572 0.88091 0.90189 1.24883 0.95913 0.96781 0.95676 1.69892 1.44389 1.41801 0.97825 0.86909 0.81862 0.83516 0.77756 1.20243 1.21200 1.19179 1.20441 0.94829 0.97879 0.87381 1.23212 0.86387 0.94290 0.98858 1.70228 1.27637 1.16569 1.06640 1.21969 0.91915 1.01582 1.02451 1.21153 0.99954 0.99304 0.95363 1.20137 0.91089 1.02758 0.98894 1.45082 1.16261 1.26535 1.24926 1.22059 0.98379 0.87140 0.99718 0.93070 0.93489 0.91727 0.91765 0.89905 0.98275 0.96184 0.92671 0.90347 0.91661 0.81969 0.91515 0.90346 0.91995 0.91123 0.90033 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 9.25 37.16 0.34 -3.09 16 2 C 0.06 1.27 5.74 -3.82 -0.02 1.25 16 3 N -0.52 -10.88 4.62 -237.52 -1.10 -11.98 16 4 C 0.16 3.69 3.50 -4.98 -0.02 3.67 16 5 C -0.51 -14.01 9.09 -34.44 -0.31 -14.32 16 6 H 0.08 2.45 7.34 -52.49 -0.39 2.07 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 9 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.12 2.22 4.94 -4.97 -0.02 2.19 16 14 C 0.24 4.13 6.83 -155.42 -1.06 3.07 16 15 N -0.49 -8.94 10.74 -10.81 -0.12 -9.06 16 16 C -0.03 -0.47 11.79 -17.81 -0.21 -0.68 16 17 C -0.04 -0.60 6.95 -81.60 -0.57 -1.16 16 18 C -0.07 -0.67 10.17 36.01 0.37 -0.30 16 19 N -0.45 -6.75 3.15 -116.67 -0.37 -7.12 16 20 C 0.07 0.83 10.64 59.85 0.64 1.47 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.82 6.19 -51.93 -0.32 0.50 16 23 H 0.06 1.30 6.36 -51.93 -0.33 0.97 16 24 H 0.06 1.30 7.09 -51.93 -0.37 0.93 16 25 H 0.08 1.87 6.90 -51.93 -0.36 1.51 16 26 H 0.00 -0.01 5.05 -51.93 -0.26 -0.27 16 27 H 0.02 0.46 7.26 -51.93 -0.38 0.08 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.08 1.26 7.42 -51.93 -0.39 0.88 16 30 H 0.07 1.15 5.89 -51.93 -0.31 0.85 16 31 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.54 7.22 -51.93 -0.38 0.16 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.81 7.20 -51.93 -0.37 0.43 16 37 H 0.10 1.36 7.71 -51.93 -0.40 0.96 16 LS Contribution 295.64 15.07 4.46 4.46 Total: -1.00 -31.94 295.64 -7.51 -39.45 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.52 Total: 0.45 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.97 Total: -6.05 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.81 Total: -54.61 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.94 -7.51 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342793680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.563 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds