Wall clock time and date at job start Sun Mar 29 2020 21:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47084 * 2 1 4 4 C 1.46898 * 111.00228 * 301.68599 * 3 2 1 5 5 C 1.50700 * 109.47057 * 293.95437 * 4 3 2 6 6 H 1.08002 * 120.00117 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99842 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99716 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47176 * 89.99892 * 9 7 5 11 11 H 1.48504 * 109.46626 * 209.99775 * 9 7 5 12 12 H 1.48503 * 109.47248 * 329.99330 * 9 7 5 13 13 C 1.46900 * 110.99899 * 65.64175 * 3 2 1 14 14 C 1.50706 * 109.47097 * 75.60913 * 13 3 2 15 15 N 1.30496 * 125.65126 * 267.23372 * 14 13 3 16 16 C 1.34132 * 109.25500 * 179.89610 * 15 14 13 17 17 C 1.34667 * 108.01752 * 0.36470 * 16 15 14 18 18 C 1.50707 * 126.58902 * 179.81691 * 17 16 15 19 19 N 1.35042 * 125.64799 * 87.53986 * 14 13 3 20 20 C 1.46509 * 126.39660 * 359.97438 * 19 14 13 21 21 H 1.08996 * 109.47415 * 182.03030 * 1 2 3 22 22 H 1.09003 * 109.46911 * 302.02752 * 1 2 3 23 23 H 1.08997 * 109.47239 * 62.02294 * 1 2 3 24 24 H 1.08997 * 109.47690 * 120.00028 * 2 1 3 25 25 H 1.09002 * 109.47288 * 240.00627 * 2 1 3 26 26 H 1.09001 * 109.47003 * 53.95158 * 4 3 2 27 27 H 1.08994 * 109.47173 * 173.95619 * 4 3 2 28 28 H 0.97003 * 119.99757 * 179.97438 * 8 7 5 29 29 H 1.08991 * 109.46984 * 195.60987 * 13 3 2 30 30 H 1.08997 * 109.46913 * 315.61208 * 13 3 2 31 31 H 1.08001 * 125.99170 * 180.19150 * 16 15 14 32 32 H 1.09008 * 109.47031 * 269.96196 * 18 17 16 33 33 H 1.08998 * 109.47111 * 29.95711 * 18 17 16 34 34 H 1.08989 * 109.47181 * 149.96180 * 18 17 16 35 35 H 1.09001 * 109.47032 * 90.00043 * 20 19 14 36 36 H 1.08999 * 109.46736 * 209.99987 * 20 19 14 37 37 H 1.08995 * 109.46710 * 329.99500 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5160 2.1215 -1.1670 5 6 2.1036 1.5335 -2.4240 6 1 2.7835 0.6967 -2.3621 7 6 1.7731 2.0639 -3.6531 8 7 2.2863 1.5511 -4.7500 9 14 0.5977 3.5118 -3.7599 10 1 1.3675 4.7801 -3.6972 11 1 -0.1495 3.4490 -5.0418 12 1 -0.3596 3.4570 -2.6259 13 6 1.6618 2.0699 1.2494 14 6 2.5624 1.5927 2.3595 15 7 2.3046 0.6104 3.1790 16 6 3.3289 0.4663 4.0329 17 6 4.2531 1.3998 3.7361 18 6 5.5695 1.6154 4.4374 19 7 3.7674 2.1147 2.6748 20 6 4.4307 3.2367 2.0058 21 1 -0.3634 -1.0270 0.0364 22 1 -0.3633 0.5450 0.8713 23 1 -0.3633 0.4821 -0.9075 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 0.4293 2.0450 -1.2036 27 1 1.8040 3.1697 -1.0871 28 1 2.0535 1.9240 -5.6147 29 1 1.7817 3.1456 1.1212 30 1 0.6251 1.8473 1.5016 31 1 3.3989 -0.2677 4.8220 32 1 5.4338 2.3230 5.2555 33 1 5.9296 0.6662 4.8342 34 1 6.2971 2.0130 3.7301 35 1 4.1416 4.1701 2.4889 36 1 5.5115 3.1122 2.0731 37 1 4.1325 3.2624 0.9577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342793680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:54 Heat of formation + Delta-G solvation = 44.477803 kcal Electronic energy + Delta-G solvation = -17262.860800 eV Core-core repulsion = 14654.598384 eV Total energy + Delta-G solvation = -2608.262415 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.01549 -38.95904 -34.93036 -34.72206 -33.14457 -31.29757 -30.39095 -27.79314 -27.64545 -25.64540 -24.56891 -21.92854 -21.18815 -20.21810 -18.87175 -17.54907 -17.11661 -16.67050 -16.25188 -15.99213 -15.25501 -15.01105 -14.53145 -14.44434 -14.07237 -13.95827 -13.56103 -13.43969 -13.27413 -13.13539 -13.02964 -12.89364 -12.70523 -12.38139 -12.23926 -11.87205 -11.57684 -11.41662 -10.84427 -10.74865 -10.42674 -9.15578 -8.95048 -8.25167 -6.28321 1.10520 1.36792 1.39289 1.49335 1.97354 2.16712 2.36702 3.08424 3.28467 3.69597 3.85316 4.00176 4.15798 4.27009 4.35636 4.41027 4.43495 4.47482 4.61501 4.64153 4.69111 4.76949 4.83941 4.96483 5.02909 5.09605 5.11431 5.23718 5.41677 5.54150 5.58690 5.93571 5.98271 6.28210 6.33567 6.64373 6.77621 7.23353 7.34770 8.91706 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.006513 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.570662 B = 4298.190131 C = 4650.467679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 N -0.534 5.534 4 C 0.169 3.831 5 C -0.510 4.510 6 H 0.032 0.968 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.945 3.055 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.132 3.868 14 C 0.205 3.795 15 N -0.520 5.520 16 C -0.060 4.060 17 C -0.030 4.030 18 C -0.068 4.068 19 N -0.449 5.449 20 C 0.065 3.935 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.003 0.997 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.183 0.817 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 4.971 17.708 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.059 4.059 3 N -0.258 5.258 4 C 0.043 3.957 5 C -0.548 4.548 6 H 0.050 0.950 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.768 3.232 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.171 1.171 13 C 0.002 3.998 14 C -0.058 4.058 15 N -0.239 5.239 16 C -0.208 4.208 17 C -0.146 4.146 18 C -0.126 4.126 19 N -0.131 5.131 20 C -0.076 4.076 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.021 0.979 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.200 0.800 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.858 4.644 17.404 18.239 hybrid contribution -0.491 0.634 -0.721 1.078 sum 2.368 5.278 16.683 17.658 Atomic orbital electron populations 1.22217 0.97453 1.02441 1.01210 1.21814 0.93665 0.89975 1.00443 1.61983 1.60140 1.02658 1.01061 1.20040 0.93792 0.93900 0.87984 1.21175 1.26853 1.16281 0.90488 0.94988 1.25816 0.97888 1.00100 0.95001 1.70060 1.46501 1.43971 0.98629 0.85751 0.79628 0.79578 0.78236 1.18713 1.21222 1.17055 1.20383 0.95128 0.98425 0.85818 1.23013 0.87760 0.95515 0.99503 1.70129 1.29229 1.17083 1.07481 1.22454 0.92022 1.03096 1.03213 1.21875 1.00877 0.97660 0.94202 1.20303 0.88739 1.04306 0.99260 1.45316 1.15683 1.26990 1.25115 1.22256 0.99478 0.87291 0.98597 0.91435 0.92038 0.93409 0.91663 0.93291 0.97925 0.94813 0.92538 0.88685 0.91532 0.79991 0.89536 0.88794 0.90937 0.88517 0.87871 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.40 9.25 71.98 0.67 -5.74 16 2 C 0.07 2.88 5.74 86.30 0.50 3.38 16 3 N -0.53 -22.28 4.62 -905.38 -4.18 -26.46 16 4 C 0.17 7.82 3.50 85.56 0.30 8.12 16 5 C -0.51 -29.02 9.09 25.60 0.23 -28.78 16 6 H 0.03 2.08 7.34 -2.91 -0.02 2.05 16 7 C 0.01 0.51 5.47 84.66 0.46 0.97 16 8 N -0.95 -59.15 13.96 21.45 0.30 -58.86 16 9 Si 0.94 42.79 27.47 68.60 1.88 44.67 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 13 C 0.13 4.54 4.94 85.56 0.42 4.96 16 14 C 0.20 6.97 6.83 138.13 0.94 7.91 16 15 N -0.52 -18.49 10.74 -188.13 -2.02 -20.51 16 16 C -0.06 -1.76 11.79 83.52 0.98 -0.78 16 17 C -0.03 -0.77 6.95 40.95 0.28 -0.49 16 18 C -0.07 -1.04 10.17 71.24 0.72 -0.31 16 19 N -0.45 -12.75 3.15 -523.03 -1.65 -14.40 16 20 C 0.07 1.40 10.64 127.77 1.36 2.76 16 21 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.06 2.07 6.19 -2.39 -0.01 2.05 16 23 H 0.05 1.90 6.36 -2.39 -0.02 1.89 16 24 H 0.06 2.69 7.09 -2.39 -0.02 2.67 16 25 H 0.05 2.33 6.90 -2.39 -0.02 2.32 16 26 H 0.00 0.14 5.05 -2.39 -0.01 0.13 16 27 H 0.03 1.48 7.26 -2.39 -0.02 1.46 16 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.09 2.88 7.42 -2.39 -0.02 2.87 16 30 H 0.07 2.26 5.89 -2.39 -0.01 2.24 16 31 H 0.18 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 0.98 7.22 -2.39 -0.02 0.96 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.73 7.20 -2.39 -0.02 1.71 16 37 H 0.08 2.08 7.71 -2.39 -0.02 2.06 16 Total: -1.00 -70.95 295.64 2.20 -68.75 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.99 Total: 14.80 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 6.88 Total: -7.99 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -7.55 Total: -120.24 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -70.95 2.20 -68.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342793680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.229 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds