Wall clock time and date at job start Sun Mar 29 2020 21:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46769 * 2 1 4 4 C 1.50700 * 109.47248 * 119.99445 * 2 1 3 5 5 H 1.07999 * 119.99797 * 119.99935 * 4 2 1 6 6 C 1.37879 * 120.00058 * 300.00599 * 4 2 1 7 7 N 1.31517 * 119.99879 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99886 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47298 * 90.00286 * 8 6 4 10 10 H 1.48500 * 109.47083 * 210.00144 * 8 6 4 11 11 H 1.48497 * 109.47181 * 329.99818 * 8 6 4 12 12 N 1.46896 * 109.47362 * 240.00128 * 2 1 3 13 13 C 1.46902 * 110.99791 * 183.95272 * 12 2 1 14 14 C 1.46896 * 111.00290 * 59.99630 * 12 2 1 15 15 C 1.53003 * 109.47055 * 190.00170 * 14 12 2 16 16 C 1.50701 * 109.46869 * 180.02562 * 15 14 12 17 17 C 1.34669 * 126.58951 * 85.04552 * 16 15 14 18 18 N 1.34128 * 108.01780 * 179.97438 * 17 16 15 19 19 C 1.30495 * 109.25774 * 359.72199 * 18 17 16 20 20 N 1.35045 * 108.69990 * 0.44365 * 19 18 17 21 21 C 1.46499 * 126.39849 * 179.82112 * 20 19 18 22 22 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47387 * 300.00493 * 1 2 3 24 24 H 1.09005 * 109.47135 * 60.00496 * 1 2 3 25 25 H 0.97005 * 119.99607 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.47403 * 296.03871 * 13 12 2 27 27 H 1.09000 * 109.47010 * 56.04794 * 13 12 2 28 28 H 1.09007 * 109.46737 * 176.03964 * 13 12 2 29 29 H 1.08997 * 109.46906 * 70.00434 * 14 12 2 30 30 H 1.08994 * 109.47091 * 310.00393 * 14 12 2 31 31 H 1.08997 * 109.47048 * 60.00351 * 15 14 12 32 32 H 1.09000 * 109.47000 * 299.99857 * 15 14 12 33 33 H 1.08000 * 125.99191 * 359.95790 * 17 16 15 34 34 H 1.07997 * 125.65170 * 180.29145 * 19 18 17 35 35 H 1.09002 * 109.47391 * 269.69091 * 21 20 19 36 36 H 1.09001 * 109.46813 * 149.69147 * 21 20 19 37 37 H 1.09004 * 109.47041 * 29.69274 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8022 0.8745 2.6992 10 1 0.9769 1.9956 3.9069 11 1 0.8489 2.1774 1.4922 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1869 14 6 1.5486 -0.0264 -2.4210 15 6 1.8627 -0.9044 -3.6341 16 6 1.3801 -0.2208 -4.8874 17 6 2.0483 0.7003 -5.6075 18 7 1.2757 1.0566 -6.6445 19 6 0.1567 0.3869 -6.5976 20 7 0.1786 -0.4174 -5.5130 21 6 -0.8829 -1.3336 -5.0886 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.9030 -0.5277 4.4376 26 1 3.9192 0.2044 -1.2300 27 1 3.8069 -1.2914 -0.2718 28 1 3.8164 -1.3721 -2.0499 29 1 2.0519 0.9345 -2.5280 30 1 0.4723 0.1323 -2.3564 31 1 1.3595 -1.8653 -3.5271 32 1 2.9392 -1.0631 -3.6987 33 1 3.0334 1.0849 -5.3883 34 1 -0.6537 0.4648 -7.3071 35 1 -1.5641 -0.8135 -4.4151 36 1 -0.4419 -2.1861 -4.5720 37 1 -1.4324 -1.6829 -5.9628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347742886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:53 Heat of formation + Delta-G solvation = 74.553928 kcal Electronic energy + Delta-G solvation = -17046.995357 eV Core-core repulsion = 14440.037141 eV Total energy + Delta-G solvation = -2606.958217 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.05626 -37.50927 -34.11368 -33.38774 -31.87993 -30.03797 -27.86365 -27.02239 -25.46448 -24.39266 -22.13664 -21.38395 -19.72062 -19.39935 -17.02597 -16.83892 -15.73424 -15.35197 -14.89437 -14.58326 -14.01449 -13.55092 -13.32432 -13.20416 -12.95050 -12.90782 -12.67099 -12.31841 -12.28468 -11.74719 -11.37430 -10.96129 -10.74179 -10.55902 -10.33557 -10.14758 -9.88327 -9.57855 -9.51326 -9.05038 -8.59525 -8.26649 -7.40947 -6.10110 -4.08813 2.05084 2.77334 3.19448 3.23400 3.34346 3.36114 4.36714 4.54997 4.61449 4.69377 4.96962 5.02882 5.14819 5.22334 5.28598 5.47014 5.55969 5.76021 5.84989 5.97568 6.08897 6.20847 6.30824 6.35160 6.43151 6.52115 6.55586 6.75554 6.78870 6.90265 7.18102 7.24156 7.55154 7.89773 8.04513 8.08827 8.61653 8.95992 9.51895 11.02534 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038925 B = 0.005592 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.165078 B = 5006.280546 C = 5218.388526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.506 4.506 5 H 0.084 0.916 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.528 5.528 13 C 0.032 3.968 14 C 0.055 3.945 15 C -0.041 4.041 16 C -0.009 4.009 17 C -0.033 4.033 18 N -0.496 5.496 19 C 0.168 3.832 20 N -0.459 5.459 21 C 0.070 3.930 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.027 0.973 25 H 0.264 0.736 26 H 0.013 0.987 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.201 0.799 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -0.265 -16.371 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.074 3.926 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.102 0.898 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.252 5.252 13 C -0.116 4.116 14 C -0.074 4.074 15 C -0.080 4.080 16 C -0.124 4.124 17 C -0.180 4.180 18 N -0.214 5.214 19 C -0.113 4.113 20 N -0.142 5.142 21 C -0.072 4.072 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.218 0.782 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.125 -0.260 -16.710 17.480 hybrid contribution -0.691 1.076 0.835 1.528 sum -5.817 0.816 -15.875 16.927 Atomic orbital electron populations 1.22213 0.98716 1.01210 0.98149 1.19674 0.91343 0.92701 0.88850 0.98496 1.20984 1.31971 1.13604 0.87870 0.89815 1.24918 0.95815 0.96561 0.95827 1.69879 1.45697 1.40243 0.97884 0.86895 0.80740 0.83891 0.76887 1.20572 1.22420 1.19479 1.61949 1.10121 1.51949 1.01221 1.22318 0.87876 0.99142 1.02243 1.22106 1.00671 0.94735 0.89882 1.20101 1.01682 0.98147 0.88082 1.21430 0.87448 1.04045 0.99466 1.22042 1.01169 1.00331 0.94493 1.70229 1.03122 1.24869 1.23173 1.24836 0.99624 0.94331 0.92537 1.45319 1.14514 1.32824 1.21578 1.22060 0.89686 0.93645 1.01848 0.92084 0.94028 0.95388 0.92595 0.96855 0.89731 0.93309 0.95460 0.91221 0.90577 0.89578 0.81609 0.78190 0.90350 0.89247 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.47 37.15 0.31 -2.84 16 2 C 0.18 4.27 1.65 -68.87 -0.11 4.15 16 3 H 0.00 -0.06 7.20 -51.92 -0.37 -0.43 16 4 C -0.51 -13.91 8.46 -34.44 -0.29 -14.20 16 5 H 0.08 2.48 6.65 -52.49 -0.35 2.13 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 8 Si 0.89 21.85 24.37 -169.99 -4.14 17.71 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 11 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.53 -10.57 4.62 -236.29 -1.09 -11.66 16 13 C 0.03 0.61 9.04 60.07 0.54 1.15 16 14 C 0.05 0.92 4.76 -3.82 -0.02 0.90 16 15 C -0.04 -0.56 5.47 -27.88 -0.15 -0.71 16 16 C -0.01 -0.12 6.21 -81.60 -0.51 -0.62 16 17 C -0.03 -0.47 11.79 -17.81 -0.21 -0.68 16 18 N -0.50 -7.35 11.25 -14.67 -0.17 -7.52 16 19 C 0.17 1.98 12.56 -90.38 -1.14 0.84 16 20 N -0.46 -5.29 3.15 -121.36 -0.38 -5.68 16 21 C 0.07 0.55 11.00 59.85 0.66 1.21 16 22 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.04 0.94 3.27 -51.93 -0.17 0.77 16 24 H 0.03 0.52 6.20 -51.93 -0.32 0.20 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 1.78 6.10 -51.93 -0.32 1.46 16 28 H 0.05 0.76 6.47 -51.93 -0.34 0.42 16 29 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.07 1.17 5.83 -51.93 -0.30 0.87 16 31 H 0.08 1.00 7.09 -51.93 -0.37 0.63 16 32 H 0.09 1.13 6.55 -51.93 -0.34 0.79 16 33 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.20 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.69 7.12 -51.93 -0.37 0.32 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 290.33 15.07 4.38 4.38 Total: -1.00 -32.19 290.33 -7.03 -39.22 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.39 Total: -1.26 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.01 Total: -8.89 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.87 Total: -51.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.19 -7.03 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347742886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.772 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds