Wall clock time and date at job start Sun Mar 29 2020 21:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46769 * 2 1 4 4 C 1.50700 * 109.47248 * 119.99445 * 2 1 3 5 5 H 1.07999 * 119.99797 * 119.99935 * 4 2 1 6 6 C 1.37879 * 120.00058 * 300.00599 * 4 2 1 7 7 N 1.31517 * 119.99879 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99886 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47298 * 90.00286 * 8 6 4 10 10 H 1.48500 * 109.47083 * 210.00144 * 8 6 4 11 11 H 1.48497 * 109.47181 * 329.99818 * 8 6 4 12 12 N 1.46896 * 109.47362 * 240.00128 * 2 1 3 13 13 C 1.46902 * 110.99791 * 183.95272 * 12 2 1 14 14 C 1.46896 * 111.00290 * 59.99630 * 12 2 1 15 15 C 1.53003 * 109.47055 * 190.00170 * 14 12 2 16 16 C 1.50701 * 109.46869 * 180.02562 * 15 14 12 17 17 C 1.34669 * 126.58951 * 85.04552 * 16 15 14 18 18 N 1.34128 * 108.01780 * 179.97438 * 17 16 15 19 19 C 1.30495 * 109.25774 * 359.72199 * 18 17 16 20 20 N 1.35045 * 108.69990 * 0.44365 * 19 18 17 21 21 C 1.46499 * 126.39849 * 179.82112 * 20 19 18 22 22 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47387 * 300.00493 * 1 2 3 24 24 H 1.09005 * 109.47135 * 60.00496 * 1 2 3 25 25 H 0.97005 * 119.99607 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.47403 * 296.03871 * 13 12 2 27 27 H 1.09000 * 109.47010 * 56.04794 * 13 12 2 28 28 H 1.09007 * 109.46737 * 176.03964 * 13 12 2 29 29 H 1.08997 * 109.46906 * 70.00434 * 14 12 2 30 30 H 1.08994 * 109.47091 * 310.00393 * 14 12 2 31 31 H 1.08997 * 109.47048 * 60.00351 * 15 14 12 32 32 H 1.09000 * 109.47000 * 299.99857 * 15 14 12 33 33 H 1.08000 * 125.99191 * 359.95790 * 17 16 15 34 34 H 1.07997 * 125.65170 * 180.29145 * 19 18 17 35 35 H 1.09002 * 109.47391 * 269.69091 * 21 20 19 36 36 H 1.09001 * 109.46813 * 149.69147 * 21 20 19 37 37 H 1.09004 * 109.47041 * 29.69274 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8022 0.8745 2.6992 10 1 0.9769 1.9956 3.9069 11 1 0.8489 2.1774 1.4922 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1869 14 6 1.5486 -0.0264 -2.4210 15 6 1.8627 -0.9044 -3.6341 16 6 1.3801 -0.2208 -4.8874 17 6 2.0483 0.7003 -5.6075 18 7 1.2757 1.0566 -6.6445 19 6 0.1567 0.3869 -6.5976 20 7 0.1786 -0.4174 -5.5130 21 6 -0.8829 -1.3336 -5.0886 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.9030 -0.5277 4.4376 26 1 3.9192 0.2044 -1.2300 27 1 3.8069 -1.2914 -0.2718 28 1 3.8164 -1.3721 -2.0499 29 1 2.0519 0.9345 -2.5280 30 1 0.4723 0.1323 -2.3564 31 1 1.3595 -1.8653 -3.5271 32 1 2.9392 -1.0631 -3.6987 33 1 3.0334 1.0849 -5.3883 34 1 -0.6537 0.4648 -7.3071 35 1 -1.5641 -0.8135 -4.4151 36 1 -0.4419 -2.1861 -4.5720 37 1 -1.4324 -1.6829 -5.9628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347742886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:53 Heat of formation + Delta-G solvation = 52.987974 kcal Electronic energy + Delta-G solvation = -17047.930527 eV Core-core repulsion = 14440.037141 eV Total energy + Delta-G solvation = -2607.893387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.98223 -39.11265 -35.30172 -34.80354 -33.49898 -31.70488 -29.12980 -27.74731 -27.16643 -26.03966 -23.62595 -22.31532 -21.14646 -20.67346 -18.87967 -17.92077 -17.12416 -16.64253 -16.22640 -16.03422 -15.37161 -14.98906 -14.64238 -14.61617 -14.37910 -13.96533 -13.79154 -13.70913 -13.43726 -13.19975 -12.76492 -12.67008 -12.46417 -12.33624 -12.06219 -11.70843 -11.45245 -10.99954 -10.89090 -10.73519 -10.45264 -9.27432 -9.03634 -8.28691 -6.31390 1.11236 1.27937 1.34022 1.43105 1.97947 2.21068 2.30457 3.04552 3.18881 3.86261 3.97002 3.98602 4.07245 4.27085 4.40793 4.46085 4.48581 4.54779 4.60736 4.63871 4.71264 4.75063 4.86903 4.88784 4.91736 5.00975 5.15962 5.28331 5.42425 5.50741 5.63188 5.80620 6.01330 6.33666 6.38035 6.67815 6.75870 7.14615 7.33407 8.87372 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038925 B = 0.005592 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.165078 B = 5006.280546 C = 5218.388526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.183 3.817 3 H -0.016 1.016 4 C -0.506 4.506 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.944 3.056 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.257 1.257 12 N -0.535 5.535 13 C 0.036 3.964 14 C 0.061 3.939 15 C -0.027 4.027 16 C -0.019 4.019 17 C -0.052 4.052 18 N -0.537 5.537 19 C 0.178 3.822 20 N -0.459 5.459 21 C 0.063 3.937 22 H 0.060 0.940 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.266 0.734 26 H 0.012 0.988 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.167 0.833 34 H 0.240 0.760 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 0.195 -18.410 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.075 3.925 3 H 0.001 0.999 4 C -0.544 4.544 5 H 0.066 0.934 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.182 1.182 12 N -0.259 5.259 13 C -0.112 4.112 14 C -0.067 4.067 15 C -0.066 4.066 16 C -0.135 4.135 17 C -0.200 4.200 18 N -0.256 5.256 19 C -0.104 4.104 20 N -0.141 5.141 21 C -0.078 4.078 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.185 0.815 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.096 0.184 -18.771 20.068 hybrid contribution -0.041 0.862 1.379 1.627 sum -7.138 1.046 -17.391 18.828 Atomic orbital electron populations 1.22098 0.96816 1.01602 0.99250 1.19522 0.92796 0.91467 0.88765 0.99864 1.21233 1.30870 1.12451 0.89830 0.93427 1.25714 0.97375 0.99678 0.95486 1.70022 1.47754 1.42375 0.98516 0.85922 0.79602 0.80281 0.76975 1.18902 1.22654 1.18171 1.61901 1.10669 1.51955 1.01370 1.22277 0.87445 0.99310 1.02200 1.22114 1.00457 0.94846 0.89313 1.19901 1.02122 0.97715 0.86815 1.21290 0.88497 1.04237 0.99491 1.22240 1.01718 1.00978 0.95035 1.70210 1.04628 1.26687 1.24045 1.25604 0.99467 0.92746 0.92551 1.45544 1.14474 1.32946 1.21134 1.22351 0.88924 0.92980 1.03531 0.92107 0.94888 0.92200 0.92536 0.96896 0.92923 0.89814 0.96112 0.91007 0.89769 0.89153 0.81526 0.74391 0.89855 0.89227 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 8.47 71.98 0.61 -5.15 16 2 C 0.18 8.44 1.65 44.17 0.07 8.51 16 3 H -0.02 -0.78 7.20 -2.38 -0.02 -0.80 16 4 C -0.51 -28.31 8.46 25.60 0.22 -28.09 16 5 H 0.05 2.95 6.65 -2.91 -0.02 2.93 16 6 C 0.01 0.86 5.45 84.65 0.46 1.32 16 7 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 8 Si 0.94 44.76 24.37 68.60 1.67 46.44 16 9 H -0.26 -11.74 6.87 99.48 0.68 -11.06 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 11 H -0.26 -11.58 6.53 99.48 0.65 -10.93 16 12 N -0.53 -20.83 4.62 -901.49 -4.17 -25.00 16 13 C 0.04 1.33 9.04 127.69 1.15 2.48 16 14 C 0.06 1.90 4.76 86.30 0.41 2.32 16 15 C -0.03 -0.66 5.47 29.85 0.16 -0.50 16 16 C -0.02 -0.47 6.21 40.95 0.25 -0.21 16 17 C -0.05 -1.44 11.79 83.52 0.98 -0.46 16 18 N -0.54 -15.00 11.25 -200.32 -2.25 -17.25 16 19 C 0.18 3.65 12.56 180.26 2.26 5.91 16 20 N -0.46 -9.15 3.15 -537.89 -1.70 -10.85 16 21 C 0.06 0.75 11.00 127.77 1.41 2.16 16 22 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.03 1.40 3.27 -2.39 -0.01 1.39 16 24 H 0.06 2.06 6.20 -2.38 -0.01 2.04 16 25 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 2.28 6.10 -2.39 -0.01 2.27 16 28 H 0.08 2.49 6.47 -2.38 -0.02 2.47 16 29 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 30 H 0.07 2.21 5.83 -2.39 -0.01 2.19 16 31 H 0.08 1.97 7.09 -2.39 -0.02 1.95 16 32 H 0.09 2.16 6.55 -2.39 -0.02 2.14 16 33 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 34 H 0.24 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.09 7.12 -2.39 -0.02 1.07 16 37 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -70.56 290.33 2.83 -67.74 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.97 Total: 8.83 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 8.00 Total: -11.71 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -7.82 Total: -111.29 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.67 Total: 46.44 kcal Total: -70.56 2.83 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347742886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.723 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds