Wall clock time and date at job start Sun Mar 29 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47124 * 2 1 4 4 C 1.50697 * 109.47377 * 240.00103 * 2 1 3 5 5 H 1.08006 * 119.99700 * 239.99887 * 4 2 1 6 6 C 1.37881 * 120.00387 * 60.00046 * 4 2 1 7 7 N 1.31509 * 119.99473 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00162 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47062 * 90.00128 * 8 6 4 10 10 H 1.48500 * 109.47197 * 210.00000 * 8 6 4 11 11 H 1.48504 * 109.47426 * 329.99837 * 8 6 4 12 12 N 1.46900 * 109.47008 * 119.99721 * 2 1 3 13 13 C 1.46905 * 111.00175 * 176.04565 * 12 2 1 14 14 C 1.46903 * 111.00106 * 300.00246 * 12 2 1 15 15 C 1.52997 * 109.46857 * 170.00014 * 14 12 2 16 16 C 1.50697 * 109.47050 * 180.02562 * 15 14 12 17 17 C 1.34669 * 126.59585 * 85.16185 * 16 15 14 18 18 N 1.34133 * 108.02235 * 180.28483 * 17 16 15 19 19 C 1.30502 * 109.25197 * 359.73051 * 18 17 16 20 20 N 1.35041 * 108.70384 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.39764 * 180.02562 * 20 19 18 22 22 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47367 * 300.00060 * 1 2 3 24 24 H 1.09008 * 109.47249 * 60.00332 * 1 2 3 25 25 H 0.97003 * 120.00058 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47011 * 183.95493 * 13 12 2 27 27 H 1.09000 * 109.47077 * 303.95758 * 13 12 2 28 28 H 1.09004 * 109.46534 * 63.95470 * 13 12 2 29 29 H 1.08997 * 109.46664 * 49.99892 * 14 12 2 30 30 H 1.08995 * 109.46703 * 289.99729 * 14 12 2 31 31 H 1.08994 * 109.47561 * 59.99911 * 15 14 12 32 32 H 1.09007 * 109.47427 * 299.99787 * 15 14 12 33 33 H 1.07993 * 125.98713 * 0.05405 * 17 16 15 34 34 H 1.08005 * 125.64657 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47391 * 90.01916 * 21 20 19 36 36 H 1.09001 * 109.46813 * 330.01972 * 21 20 19 37 37 H 1.09004 * 109.47041 * 210.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3450 -2.1615 -4.4123 10 1 2.4875 -0.1402 -5.1119 11 1 3.6311 -1.7565 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5485 -0.0263 2.4211 15 6 1.8625 -0.9042 3.6341 16 6 1.3787 -0.2212 4.8873 17 6 0.1349 -0.2731 5.4008 18 7 0.1147 0.4726 6.5156 19 6 1.3004 0.9799 6.7154 20 7 2.1199 0.5692 5.7238 21 6 3.5364 0.9097 5.5695 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 0.7088 1.1613 -3.4844 26 1 3.8162 -1.3721 2.0501 27 1 3.8069 -1.2915 0.2720 28 1 3.9191 0.2044 1.2301 29 1 0.4721 0.1324 2.3563 30 1 2.0517 0.9346 2.5280 31 1 2.9389 -1.0630 3.6989 32 1 1.3593 -1.8653 3.5272 33 1 -0.7009 -0.8165 4.9856 34 1 1.5799 1.6219 7.5377 35 1 4.1466 0.1691 6.0865 36 1 3.7216 1.8953 5.9966 37 1 3.7948 0.9182 4.5106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347742900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:55 Heat of formation + Delta-G solvation = 66.067084 kcal Electronic energy + Delta-G solvation = -16974.566903 eV Core-core repulsion = 14367.240669 eV Total energy + Delta-G solvation = -2607.326234 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.98681 -37.27597 -34.06167 -33.34660 -31.78233 -29.19030 -27.74589 -26.99045 -25.41282 -24.25226 -22.02471 -21.32412 -19.68932 -19.30998 -16.97949 -16.29904 -15.66562 -15.35432 -14.67025 -14.33650 -13.96977 -13.56223 -13.39720 -12.95909 -12.85823 -12.84104 -12.29735 -12.25209 -11.83347 -11.33203 -11.09564 -10.92951 -10.66979 -10.36577 -10.11999 -10.04534 -9.84504 -9.81200 -9.49700 -8.88779 -8.42884 -8.18873 -7.21982 -6.02159 -4.07032 2.11457 2.82259 3.27367 3.29936 3.36408 3.38901 4.38819 4.62514 4.71258 4.74924 4.97331 5.12364 5.22912 5.28359 5.35845 5.57043 5.67455 5.84244 5.96050 6.10293 6.14324 6.34994 6.46082 6.57251 6.72788 6.86120 6.88432 7.06077 7.15152 7.25016 7.51215 7.71457 7.81378 8.15641 8.18902 8.30809 8.57813 8.99239 9.58030 11.04656 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.047555 B = 0.005068 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.652254 B = 5523.115460 C = 5804.673459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.537 5.537 13 C 0.035 3.965 14 C 0.059 3.941 15 C -0.041 4.041 16 C -0.008 4.008 17 C -0.030 4.030 18 N -0.495 5.495 19 C 0.167 3.833 20 N -0.461 5.461 21 C 0.071 3.929 22 H 0.035 0.965 23 H 0.009 0.991 24 H 0.085 0.915 25 H 0.260 0.740 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.079 0.921 30 H 0.015 0.985 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.201 0.799 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -0.086 14.199 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.262 5.262 13 C -0.114 4.114 14 C -0.070 4.070 15 C -0.080 4.080 16 C -0.123 4.123 17 C -0.178 4.178 18 N -0.213 5.213 19 C -0.114 4.114 20 N -0.145 5.145 21 C -0.071 4.071 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.026 0.974 29 H 0.098 0.902 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.186 0.814 34 H 0.217 0.783 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.237 -0.274 14.525 15.133 hybrid contribution 1.412 0.439 -1.315 1.979 sum 5.648 0.164 13.209 14.367 Atomic orbital electron populations 1.21858 0.97644 0.99750 0.99935 1.19235 0.92411 0.91881 0.85796 0.98611 1.21153 1.31105 1.12277 0.89753 0.91831 1.24939 0.95215 0.95063 0.99045 1.69896 1.36886 1.23014 1.23426 0.86516 0.79198 0.79297 0.82484 1.20617 1.21364 1.19969 1.62125 1.09072 1.52762 1.02210 1.22264 0.89053 0.98555 1.01518 1.22075 1.01441 0.93784 0.89703 1.20131 1.00879 0.98895 0.88132 1.21465 0.93119 1.00979 0.96748 1.22080 0.96269 1.04292 0.95129 1.70239 1.20676 1.12679 1.17717 1.24824 0.86386 1.04535 0.95697 1.45307 1.10529 1.37757 1.20895 1.22021 0.78652 1.02010 1.04462 0.94555 0.97197 0.89685 0.92973 0.93896 0.90342 0.97396 0.90234 0.96680 0.91638 0.88858 0.81370 0.78256 0.90642 0.89570 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.76 37.15 0.33 -2.96 16 2 C 0.21 5.35 2.06 -68.87 -0.14 5.21 16 3 H 0.00 -0.10 8.14 -51.93 -0.42 -0.53 16 4 C -0.50 -13.65 7.88 -34.44 -0.27 -13.93 16 5 H 0.06 1.71 6.41 -52.48 -0.34 1.37 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.54 -11.29 4.62 -236.29 -1.09 -12.38 16 13 C 0.03 0.65 9.04 60.07 0.54 1.20 16 14 C 0.06 1.06 4.76 -3.82 -0.02 1.04 16 15 C -0.04 -0.60 5.32 -27.89 -0.15 -0.75 16 16 C -0.01 -0.12 6.21 -81.60 -0.51 -0.62 16 17 C -0.03 -0.46 11.79 -17.81 -0.21 -0.67 16 18 N -0.50 -7.66 11.25 -14.66 -0.16 -7.83 16 19 C 0.17 2.07 12.56 -90.37 -1.14 0.93 16 20 N -0.46 -5.61 3.15 -121.36 -0.38 -6.00 16 21 C 0.07 0.59 10.83 59.85 0.65 1.24 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.01 0.21 6.20 -51.93 -0.32 -0.12 16 24 H 0.08 2.29 6.07 -51.92 -0.32 1.97 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.04 0.67 6.47 -51.93 -0.34 0.33 16 27 H 0.08 1.60 6.10 -51.93 -0.32 1.29 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.08 1.51 5.83 -51.93 -0.30 1.21 16 30 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.07 0.88 6.04 -51.93 -0.31 0.57 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.20 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.78 7.67 -51.93 -0.40 0.39 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -31.08 297.90 -8.13 -39.21 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.58 Total: -1.01 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.01 Total: -7.81 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -1.01 Total: -50.99 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.08 -8.13 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347742900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.282 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds