Wall clock time and date at job start Sun Mar 29 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47124 * 2 1 4 4 C 1.50697 * 109.47377 * 240.00103 * 2 1 3 5 5 H 1.08006 * 119.99700 * 239.99887 * 4 2 1 6 6 C 1.37881 * 120.00387 * 60.00046 * 4 2 1 7 7 N 1.31509 * 119.99473 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00162 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47062 * 90.00128 * 8 6 4 10 10 H 1.48500 * 109.47197 * 210.00000 * 8 6 4 11 11 H 1.48504 * 109.47426 * 329.99837 * 8 6 4 12 12 N 1.46900 * 109.47008 * 119.99721 * 2 1 3 13 13 C 1.46905 * 111.00175 * 176.04565 * 12 2 1 14 14 C 1.46903 * 111.00106 * 300.00246 * 12 2 1 15 15 C 1.52997 * 109.46857 * 170.00014 * 14 12 2 16 16 C 1.50697 * 109.47050 * 180.02562 * 15 14 12 17 17 C 1.34669 * 126.59585 * 85.16185 * 16 15 14 18 18 N 1.34133 * 108.02235 * 180.28483 * 17 16 15 19 19 C 1.30502 * 109.25197 * 359.73051 * 18 17 16 20 20 N 1.35041 * 108.70384 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.39764 * 180.02562 * 20 19 18 22 22 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47367 * 300.00060 * 1 2 3 24 24 H 1.09008 * 109.47249 * 60.00332 * 1 2 3 25 25 H 0.97003 * 120.00058 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47011 * 183.95493 * 13 12 2 27 27 H 1.09000 * 109.47077 * 303.95758 * 13 12 2 28 28 H 1.09004 * 109.46534 * 63.95470 * 13 12 2 29 29 H 1.08997 * 109.46664 * 49.99892 * 14 12 2 30 30 H 1.08995 * 109.46703 * 289.99729 * 14 12 2 31 31 H 1.08994 * 109.47561 * 59.99911 * 15 14 12 32 32 H 1.09007 * 109.47427 * 299.99787 * 15 14 12 33 33 H 1.07993 * 125.98713 * 0.05405 * 17 16 15 34 34 H 1.08005 * 125.64657 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47391 * 90.01916 * 21 20 19 36 36 H 1.09001 * 109.46813 * 330.01972 * 21 20 19 37 37 H 1.09004 * 109.47041 * 210.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3450 -2.1615 -4.4123 10 1 2.4875 -0.1402 -5.1119 11 1 3.6311 -1.7565 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5485 -0.0263 2.4211 15 6 1.8625 -0.9042 3.6341 16 6 1.3787 -0.2212 4.8873 17 6 0.1349 -0.2731 5.4008 18 7 0.1147 0.4726 6.5156 19 6 1.3004 0.9799 6.7154 20 7 2.1199 0.5692 5.7238 21 6 3.5364 0.9097 5.5695 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 0.7088 1.1613 -3.4844 26 1 3.8162 -1.3721 2.0501 27 1 3.8069 -1.2915 0.2720 28 1 3.9191 0.2044 1.2301 29 1 0.4721 0.1324 2.3563 30 1 2.0517 0.9346 2.5280 31 1 2.9389 -1.0630 3.6989 32 1 1.3593 -1.8653 3.5272 33 1 -0.7009 -0.8165 4.9856 34 1 1.5799 1.6219 7.5377 35 1 4.1466 0.1691 6.0865 36 1 3.7216 1.8953 5.9966 37 1 3.7948 0.9182 4.5106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347742900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:55 Heat of formation + Delta-G solvation = 47.106568 kcal Electronic energy + Delta-G solvation = -16975.389093 eV Core-core repulsion = 14367.240669 eV Total energy + Delta-G solvation = -2608.148423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.98458 -38.96078 -35.34141 -34.80197 -33.29355 -31.03239 -29.08990 -27.77474 -27.20584 -25.94010 -23.61755 -22.31784 -21.14942 -20.70205 -18.35984 -17.93476 -17.03925 -16.61565 -16.20379 -15.76008 -15.38289 -15.19651 -14.47114 -14.43486 -13.99223 -13.80518 -13.75843 -13.49101 -13.28118 -12.93921 -12.85364 -12.63293 -12.52037 -12.11775 -12.04709 -11.93860 -11.52369 -10.94608 -10.82851 -10.50355 -10.45378 -9.28115 -8.95479 -8.10754 -6.22960 1.10337 1.43594 1.44886 1.54530 1.96623 2.21312 2.43202 3.17238 3.32826 3.87164 3.94377 3.96382 4.09604 4.32538 4.43349 4.44387 4.54256 4.63554 4.68111 4.72764 4.73527 4.91705 5.00814 5.06814 5.08432 5.12098 5.30095 5.47793 5.50695 5.72429 5.77957 5.82181 6.25425 6.35440 6.39152 6.72316 6.92096 7.14231 7.46475 8.95472 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.047555 B = 0.005068 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.652254 B = 5523.115460 C = 5804.673459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.216 3.784 3 H -0.041 1.041 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.542 5.542 13 C 0.037 3.963 14 C 0.066 3.934 15 C -0.024 4.024 16 C -0.021 4.021 17 C -0.051 4.051 18 N -0.536 5.536 19 C 0.179 3.821 20 N -0.461 5.461 21 C 0.064 3.936 22 H 0.034 0.966 23 H 0.027 0.973 24 H 0.058 0.942 25 H 0.261 0.739 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.005 0.995 29 H 0.064 0.936 30 H 0.009 0.991 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.241 0.759 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 -0.581 15.376 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 H -0.024 1.024 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.267 5.267 13 C -0.111 4.111 14 C -0.063 4.063 15 C -0.063 4.063 16 C -0.137 4.137 17 C -0.198 4.198 18 N -0.255 5.255 19 C -0.104 4.104 20 N -0.143 5.143 21 C -0.077 4.077 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.185 0.815 34 H 0.257 0.743 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.815 -0.779 15.716 16.776 hybrid contribution 0.950 0.652 -1.585 1.960 sum 6.765 -0.127 14.131 15.668 Atomic orbital electron populations 1.21679 0.97520 0.99351 0.99496 1.19029 0.92534 0.90044 0.87450 1.02392 1.21447 1.31118 1.12321 0.90772 0.91828 1.25749 0.95377 0.95735 1.02054 1.70033 1.37873 1.24319 1.24039 0.85497 0.78941 0.78137 0.78696 1.20213 1.21152 1.18998 1.62065 1.10537 1.52249 1.01810 1.22276 0.87572 0.98855 1.02368 1.22029 1.00235 0.94183 0.89811 1.19891 1.01843 0.97947 0.86578 1.21320 0.93273 1.01988 0.97080 1.22260 0.96955 1.04910 0.95709 1.70215 1.22730 1.14113 1.18395 1.25621 0.85471 1.03295 0.95970 1.45539 1.11896 1.36754 1.20154 1.22327 0.76540 1.04263 1.04547 0.94732 0.95463 0.92287 0.92991 0.90026 0.92141 0.97603 0.91791 0.97289 0.89968 0.88838 0.81493 0.74280 0.88589 0.86855 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.76 71.98 0.63 -5.50 16 2 C 0.22 11.08 2.06 44.17 0.09 11.17 16 3 H -0.04 -2.39 8.14 -2.38 -0.02 -2.41 16 4 C -0.52 -28.29 7.88 25.60 0.20 -28.09 16 5 H 0.06 3.40 6.41 -2.91 -0.02 3.39 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -53.47 11.32 21.45 0.24 -53.22 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 N -0.54 -22.58 4.62 -901.48 -4.17 -26.75 16 13 C 0.04 1.36 9.04 127.69 1.15 2.52 16 14 C 0.07 2.33 4.76 86.30 0.41 2.74 16 15 C -0.02 -0.65 5.32 29.85 0.16 -0.49 16 16 C -0.02 -0.56 6.21 40.95 0.25 -0.31 16 17 C -0.05 -1.54 11.79 83.52 0.98 -0.55 16 18 N -0.54 -16.01 11.25 -200.31 -2.25 -18.26 16 19 C 0.18 3.96 12.56 180.26 2.26 6.22 16 20 N -0.46 -10.03 3.15 -537.87 -1.70 -11.72 16 21 C 0.06 0.84 10.83 127.77 1.38 2.22 16 22 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.03 1.22 6.20 -2.39 -0.01 1.20 16 24 H 0.06 3.26 6.07 -2.38 -0.01 3.25 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.08 2.32 6.47 -2.39 -0.02 2.31 16 27 H 0.06 2.42 6.10 -2.39 -0.01 2.40 16 28 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.06 2.45 5.83 -2.39 -0.01 2.43 16 30 H 0.01 0.33 8.12 -2.39 -0.02 0.31 16 31 H 0.08 1.96 6.04 -2.39 -0.01 1.95 16 32 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.17 4.75 8.06 -2.91 -0.02 4.72 16 34 H 0.24 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.20 7.67 -2.38 -0.02 1.18 16 Total: -1.00 -67.75 297.90 3.18 -64.57 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.04 Total: 9.12 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 7.98 Total: -9.09 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -7.87 Total: -109.96 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.75 3.18 -64.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347742900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.675 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds