Wall clock time and date at job start Sun Mar 29 2020 21:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.53002 * 109.47053 * 66.04236 * 3 2 1 5 5 C 1.52996 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46946 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00275 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99908 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99697 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99899 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47418 * 89.99714 * 10 8 6 12 12 H 1.48498 * 109.47091 * 209.99774 * 10 8 6 13 13 H 1.48498 * 109.46997 * 329.99585 * 10 8 6 14 14 C 1.46893 * 111.00360 * 236.04616 * 2 1 3 15 15 C 1.50704 * 109.47295 * 293.95434 * 14 2 1 16 16 C 1.35305 * 126.12913 * 94.68511 * 15 14 2 17 17 C 1.39873 * 107.92317 * 179.90715 * 16 15 14 18 18 N 1.30844 * 108.20004 * 0.36566 * 17 16 15 19 19 N 1.34950 * 126.11982 * 275.00008 * 15 14 2 20 20 C 1.46496 * 126.04402 * 359.94158 * 19 15 14 21 21 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 22 22 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 24 24 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 25 25 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 26 26 H 1.09001 * 109.47142 * 300.00160 * 4 3 2 27 27 H 1.09004 * 109.47006 * 60.00213 * 4 3 2 28 28 H 1.09001 * 109.47372 * 300.00036 * 5 4 3 29 29 H 1.09004 * 109.47108 * 60.00292 * 5 4 3 30 30 H 0.97007 * 119.99539 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.47389 * 53.94866 * 14 2 1 32 32 H 1.08994 * 109.47622 * 173.94883 * 14 2 1 33 33 H 1.08001 * 126.04226 * 0.03458 * 16 15 14 34 34 H 1.08002 * 125.90281 * 180.14109 * 17 16 15 35 35 H 1.09001 * 109.47488 * 89.99656 * 20 19 15 36 36 H 1.08993 * 109.47258 * 210.00221 * 20 19 15 37 37 H 1.09006 * 109.46935 * 329.99912 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 6 2.1801 3.4857 1.3185 6 6 1.8220 4.1612 2.6172 7 1 1.2597 3.6253 3.3675 8 6 2.2124 5.4634 2.8474 9 7 2.8976 6.1157 1.9339 10 14 1.7691 6.3005 4.4575 11 1 2.8466 6.0637 5.4516 12 1 1.6167 7.7601 4.2309 13 1 0.4917 5.7430 4.9699 14 6 1.9955 -0.7659 -1.1375 15 6 1.6370 -2.2204 -0.9728 16 6 0.5595 -2.8417 -1.5053 17 6 0.5996 -4.1840 -1.1141 18 7 1.6590 -4.3604 -0.3667 19 7 2.3302 -3.1351 -0.2629 20 6 3.5664 -2.8903 0.4841 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.0796 1.3446 -0.1082 25 1 1.5610 1.9274 -0.8310 26 1 0.5470 2.0845 1.4264 27 1 2.0657 1.5016 2.1492 28 1 3.2644 3.4583 1.2105 29 1 1.7461 4.0418 0.4875 30 1 3.1725 7.0318 2.0961 31 1 1.5611 -0.3873 -2.0628 32 1 3.0797 -0.6610 -1.1756 33 1 -0.1968 -2.3829 -2.1249 34 1 -0.1215 -4.9429 -1.3797 35 1 3.3220 -2.5982 1.5054 36 1 4.1673 -3.7994 0.5002 37 1 4.1296 -2.0909 0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348366212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:06 Heat of formation + Delta-G solvation = 70.682231 kcal Electronic energy + Delta-G solvation = -16477.535757 eV Core-core repulsion = 13870.409651 eV Total energy + Delta-G solvation = -2607.126106 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25874 -37.55132 -33.84545 -33.22157 -31.83808 -30.28556 -27.32348 -26.85681 -26.64137 -24.05517 -21.64858 -21.14635 -19.94178 -19.60394 -16.71727 -16.31767 -15.84584 -15.31275 -14.82564 -14.57671 -14.32940 -13.95813 -13.71014 -13.46173 -12.68148 -12.53738 -12.40848 -12.30657 -11.86714 -11.60589 -11.42746 -11.23511 -10.83487 -10.68390 -10.56131 -10.52764 -9.64886 -9.43784 -9.27115 -9.07276 -8.55799 -8.35187 -8.17697 -6.00632 -4.02601 1.82596 2.52577 2.78772 3.31824 3.38028 3.41697 4.15722 4.46660 4.54567 4.59462 4.96813 5.12321 5.18974 5.35286 5.36299 5.44981 5.50676 5.59329 5.65826 5.69949 5.82557 5.91830 6.11281 6.14716 6.26649 6.62536 6.65246 6.70887 6.97351 7.05897 7.22808 7.30299 7.67093 7.70119 7.81420 7.99628 8.43035 9.04542 9.61535 11.10812 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.004021 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.096660 B = 6961.130603 C = 7043.871480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.111 3.889 15 C 0.105 3.895 16 C -0.277 4.277 17 C 0.043 3.957 18 N -0.304 5.304 19 N -0.360 5.360 20 C 0.103 3.897 21 H 0.025 0.975 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.180 0.820 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -16.456 -7.449 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.019 4.019 15 C -0.024 4.024 16 C -0.307 4.307 17 C -0.142 4.142 18 N -0.125 5.125 19 N -0.142 5.142 20 C -0.038 4.038 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.197 0.803 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.797 -17.325 -6.286 18.447 hybrid contribution -0.966 1.547 -0.339 1.855 sum -1.763 -15.777 -6.625 17.203 Atomic orbital electron populations 1.22470 0.87187 1.01824 1.01256 1.62071 1.08514 1.15221 1.40507 1.22353 0.99486 0.85674 0.99555 1.21653 1.00219 0.98155 0.94184 1.19075 0.96202 0.89264 0.97032 1.21248 1.34810 0.97610 1.02036 0.92695 1.25024 0.95228 0.97494 0.96729 1.69965 1.38368 1.11331 1.33949 0.86600 0.78873 0.78631 0.83943 1.20660 1.21246 1.19872 1.20669 1.00818 0.86546 0.93853 1.20968 0.93778 0.92568 0.95125 1.21217 1.02304 0.94656 1.12520 1.23754 0.96536 0.96924 0.97034 1.77335 1.09411 1.03147 1.22657 1.48447 1.20981 1.06075 1.38699 1.21841 0.82552 1.02738 0.96699 0.95652 0.91509 0.90610 0.91208 0.94948 0.93314 0.92664 0.96630 0.96782 0.93034 0.92221 0.89725 0.83912 0.80289 0.90181 0.89768 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 60.07 0.55 0.83 16 2 N -0.54 -7.75 4.75 -244.37 -1.16 -8.91 16 3 C 0.06 0.92 4.96 -3.82 -0.02 0.91 16 4 C -0.10 -2.12 5.08 -26.73 -0.14 -2.25 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.11 1.33 5.14 -4.98 -0.03 1.30 16 15 C 0.10 1.32 5.69 -82.26 -0.47 0.85 16 16 C -0.28 -3.25 9.57 -40.02 -0.38 -3.64 16 17 C 0.04 0.50 12.03 -17.36 -0.21 0.29 16 18 N -0.30 -4.20 12.58 30.63 0.39 -3.81 16 19 N -0.36 -4.67 4.01 -63.89 -0.26 -4.93 16 20 C 0.10 1.03 11.27 59.84 0.67 1.70 16 21 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.07 0.87 6.32 -51.92 -0.33 0.55 16 23 H 0.08 1.12 6.47 -51.93 -0.34 0.78 16 24 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 25 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 26 H 0.05 0.99 6.55 -51.93 -0.34 0.65 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.08 0.93 7.03 -51.93 -0.37 0.56 16 33 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.18 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.74 7.15 -51.93 -0.37 0.37 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -31.94 306.58 -7.18 -39.12 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.92 Total: -3.53 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -0.57 Total: -13.07 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.30 Total: -43.78 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.94 -7.18 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348366212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.802 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds