Wall clock time and date at job start Sun Mar 29 2020 21:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.53002 * 109.47053 * 66.04236 * 3 2 1 5 5 C 1.52996 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46946 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00275 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99908 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99697 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99899 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47418 * 89.99714 * 10 8 6 12 12 H 1.48498 * 109.47091 * 209.99774 * 10 8 6 13 13 H 1.48498 * 109.46997 * 329.99585 * 10 8 6 14 14 C 1.46893 * 111.00360 * 236.04616 * 2 1 3 15 15 C 1.50704 * 109.47295 * 293.95434 * 14 2 1 16 16 C 1.35305 * 126.12913 * 94.68511 * 15 14 2 17 17 C 1.39873 * 107.92317 * 179.90715 * 16 15 14 18 18 N 1.30844 * 108.20004 * 0.36566 * 17 16 15 19 19 N 1.34950 * 126.11982 * 275.00008 * 15 14 2 20 20 C 1.46496 * 126.04402 * 359.94158 * 19 15 14 21 21 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 22 22 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 24 24 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 25 25 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 26 26 H 1.09001 * 109.47142 * 300.00160 * 4 3 2 27 27 H 1.09004 * 109.47006 * 60.00213 * 4 3 2 28 28 H 1.09001 * 109.47372 * 300.00036 * 5 4 3 29 29 H 1.09004 * 109.47108 * 60.00292 * 5 4 3 30 30 H 0.97007 * 119.99539 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.47389 * 53.94866 * 14 2 1 32 32 H 1.08994 * 109.47622 * 173.94883 * 14 2 1 33 33 H 1.08001 * 126.04226 * 0.03458 * 16 15 14 34 34 H 1.08002 * 125.90281 * 180.14109 * 17 16 15 35 35 H 1.09001 * 109.47488 * 89.99656 * 20 19 15 36 36 H 1.08993 * 109.47258 * 210.00221 * 20 19 15 37 37 H 1.09006 * 109.46935 * 329.99912 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 6 2.1801 3.4857 1.3185 6 6 1.8220 4.1612 2.6172 7 1 1.2597 3.6253 3.3675 8 6 2.2124 5.4634 2.8474 9 7 2.8976 6.1157 1.9339 10 14 1.7691 6.3005 4.4575 11 1 2.8466 6.0637 5.4516 12 1 1.6167 7.7601 4.2309 13 1 0.4917 5.7430 4.9699 14 6 1.9955 -0.7659 -1.1375 15 6 1.6370 -2.2204 -0.9728 16 6 0.5595 -2.8417 -1.5053 17 6 0.5996 -4.1840 -1.1141 18 7 1.6590 -4.3604 -0.3667 19 7 2.3302 -3.1351 -0.2629 20 6 3.5664 -2.8903 0.4841 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.0796 1.3446 -0.1082 25 1 1.5610 1.9274 -0.8310 26 1 0.5470 2.0845 1.4264 27 1 2.0657 1.5016 2.1492 28 1 3.2644 3.4583 1.2105 29 1 1.7461 4.0418 0.4875 30 1 3.1725 7.0318 2.0961 31 1 1.5611 -0.3873 -2.0628 32 1 3.0797 -0.6610 -1.1756 33 1 -0.1968 -2.3829 -2.1249 34 1 -0.1215 -4.9429 -1.3797 35 1 3.3220 -2.5982 1.5054 36 1 4.1673 -3.7994 0.5002 37 1 4.1296 -2.0909 0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348366212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:05 Heat of formation + Delta-G solvation = 49.865263 kcal Electronic energy + Delta-G solvation = -16478.438448 eV Core-core repulsion = 13870.409651 eV Total energy + Delta-G solvation = -2608.028797 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16132 -38.76133 -35.72507 -34.15934 -33.50820 -31.53923 -28.65401 -28.22550 -27.50934 -25.66714 -23.22200 -22.03878 -21.48674 -20.55244 -18.48164 -17.57552 -17.00396 -16.59601 -16.37500 -15.78921 -15.51823 -15.22782 -14.78881 -14.50122 -14.25442 -13.65105 -13.59008 -13.50001 -13.17989 -13.10894 -12.71262 -12.65768 -12.53343 -12.32238 -12.24532 -11.58882 -11.41180 -11.35101 -11.11484 -10.53609 -10.25672 -9.48930 -9.28299 -8.19494 -6.29832 0.89568 1.40724 1.41517 1.52742 1.69147 1.90454 2.41577 3.05086 3.13944 3.65239 3.76681 4.04580 4.17194 4.29077 4.37026 4.43728 4.50954 4.64432 4.65565 4.72571 4.74989 4.81741 4.85731 4.96320 5.06630 5.10463 5.21757 5.28797 5.53691 5.76262 5.78852 5.87859 5.99369 6.06768 6.14656 6.29038 6.80195 6.87073 7.39309 8.92237 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.004021 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.096660 B = 6961.130603 C = 7043.871480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.069 3.931 4 C -0.089 4.089 5 C 0.026 3.974 6 C -0.543 4.543 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.265 1.265 14 C 0.114 3.886 15 C 0.093 3.907 16 C -0.280 4.280 17 C 0.041 3.959 18 N -0.336 5.336 19 N -0.371 5.371 20 C 0.097 3.903 21 H 0.034 0.966 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.048 0.952 27 H 0.049 0.951 28 H -0.005 1.005 29 H -0.008 1.008 30 H 0.263 0.737 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 -17.099 -7.405 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.058 4.058 4 C -0.127 4.127 5 C -0.012 4.012 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.189 1.189 14 C -0.014 4.014 15 C -0.036 4.036 16 C -0.310 4.310 17 C -0.144 4.144 18 N -0.158 5.158 19 N -0.153 5.153 20 C -0.043 4.043 21 H 0.053 0.947 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.178 0.822 34 H 0.226 0.774 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.401 -17.988 -6.242 19.091 hybrid contribution -0.784 1.710 -0.388 1.921 sum -2.186 -16.277 -6.631 17.712 Atomic orbital electron populations 1.22436 0.86788 1.02209 1.00994 1.61953 1.08951 1.13817 1.42232 1.22057 0.99924 0.86744 0.97082 1.21388 0.99713 0.95268 0.96365 1.18971 0.94839 0.92098 0.95266 1.21694 1.34933 0.98322 1.03138 0.92542 1.25939 0.94989 0.98272 1.00472 1.70086 1.39328 1.11794 1.36059 0.85490 0.78988 0.77468 0.79370 1.19788 1.20676 1.18923 1.20688 1.01512 0.85950 0.93291 1.21123 0.94273 0.92681 0.95567 1.21524 1.02344 0.94747 1.12380 1.24307 0.96324 0.97743 0.95995 1.77294 1.10539 1.04070 1.23935 1.48699 1.21629 1.05956 1.39021 1.22006 0.82117 1.03877 0.96321 0.94712 0.90739 0.92050 0.90622 0.94910 0.93365 0.93221 0.98693 0.98955 0.92773 0.90886 0.88662 0.82200 0.77440 0.90778 0.88603 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.12 127.69 1.16 1.78 16 2 N -0.55 -14.81 4.75 -927.04 -4.41 -19.22 16 3 C 0.07 2.21 4.96 86.30 0.43 2.64 16 4 C -0.09 -3.62 5.08 30.59 0.16 -3.47 16 5 C 0.03 1.35 4.97 29.85 0.15 1.49 16 6 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 7 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 8 C 0.00 0.06 5.46 84.66 0.46 0.52 16 9 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 10 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 14 C 0.11 2.51 5.14 85.56 0.44 2.95 16 15 C 0.09 2.16 5.69 41.40 0.24 2.39 16 16 C -0.28 -5.96 9.57 21.99 0.21 -5.75 16 17 C 0.04 0.88 12.03 85.24 1.03 1.90 16 18 N -0.34 -8.86 12.58 -57.02 -0.72 -9.58 16 19 N -0.37 -9.12 4.01 -356.04 -1.43 -10.55 16 20 C 0.10 1.84 11.27 127.77 1.44 3.28 16 21 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.07 1.81 6.32 -2.38 -0.02 1.79 16 23 H 0.06 1.75 6.47 -2.39 -0.02 1.74 16 24 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 25 H 0.03 1.05 8.12 -2.38 -0.02 1.03 16 26 H 0.05 1.94 6.55 -2.39 -0.02 1.93 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 29 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 30 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 31 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.10 1.88 7.03 -2.39 -0.02 1.86 16 33 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.57 7.15 -2.38 -0.02 1.55 16 Total: -1.00 -67.71 306.58 2.73 -64.98 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.03 Total: 7.21 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 5.94 Total: -22.98 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -6.27 Total: -95.48 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.71 2.73 -64.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348366212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.845 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds