Wall clock time and date at job start Sun Mar 29 2020 21:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47167 * 2 1 4 4 N 1.40076 * 126.04085 * 269.97351 * 3 2 1 5 5 C 1.30842 * 108.21054 * 180.02562 * 4 3 2 6 6 C 1.39877 * 108.19583 * 359.78149 * 5 4 3 7 7 C 1.34956 * 126.03413 * 90.00043 * 3 2 1 8 8 C 1.50694 * 126.12832 * 359.94143 * 7 3 2 9 9 N 1.46905 * 109.47033 * 275.00226 * 8 7 3 10 10 C 1.46900 * 110.99850 * 293.95020 * 9 8 7 11 11 C 1.46906 * 111.00051 * 170.00053 * 9 8 7 12 12 C 1.52993 * 109.47378 * 189.99991 * 11 9 8 13 13 C 1.50696 * 109.47429 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47112 * 90.00199 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00310 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99931 * 17 15 13 21 21 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46777 * 300.00273 * 1 2 3 23 23 H 1.09000 * 109.46829 * 59.99593 * 1 2 3 24 24 H 1.08997 * 109.46972 * 240.00482 * 2 1 3 25 25 H 1.09000 * 109.46829 * 120.00407 * 2 1 3 26 26 H 1.07998 * 125.90047 * 180.02562 * 5 4 3 27 27 H 1.08002 * 126.03660 * 180.23488 * 6 5 4 28 28 H 1.08997 * 109.47644 * 155.00347 * 8 7 3 29 29 H 1.09000 * 109.47199 * 34.99624 * 8 7 3 30 30 H 1.08996 * 109.47030 * 296.04770 * 10 9 8 31 31 H 1.08999 * 109.46702 * 56.04909 * 10 9 8 32 32 H 1.08996 * 109.46890 * 176.04778 * 10 9 8 33 33 H 1.09004 * 109.47040 * 309.99779 * 11 9 8 34 34 H 1.09000 * 109.47033 * 69.99731 * 11 9 8 35 35 H 1.09004 * 109.46862 * 299.99897 * 12 11 9 36 36 H 1.09004 * 109.46998 * 59.99419 * 12 11 9 37 37 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2936 2.1580 -1.1327 5 6 2.7092 3.3322 -0.7320 6 6 2.7071 3.3424 0.6667 7 6 2.2830 2.1297 1.0913 8 6 2.1280 1.6949 2.5258 9 7 0.7388 1.9063 2.9542 10 6 0.4095 3.3375 2.9853 11 6 0.4892 1.2802 4.2595 12 6 -1.0113 1.3020 4.5571 13 6 -1.2674 0.6591 5.8958 14 1 -0.4423 0.2740 6.4765 15 6 -2.5549 0.5637 6.3798 16 7 -3.5596 1.0332 5.6729 17 14 -2.8722 -0.2325 8.0396 18 1 -2.8139 0.8015 9.1038 19 1 -4.2159 -0.8646 8.0366 20 1 -1.8390 -1.2674 8.2977 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.9994 4.1532 -1.3709 27 1 2.9952 4.1712 1.2965 28 1 2.7959 2.2806 3.1573 29 1 2.3785 0.6378 2.6142 30 1 1.0242 3.8355 3.7351 31 1 0.6034 3.7763 2.0066 32 1 -0.6435 3.4626 3.2374 33 1 0.8410 0.2486 4.2408 34 1 1.0214 1.8316 5.0346 35 1 -1.3631 2.3335 4.5757 36 1 -1.5435 0.7506 3.7819 37 1 -4.4654 0.9657 6.0131 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352367847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:29 Heat of formation + Delta-G solvation = 52.105984 kcal Electronic energy + Delta-G solvation = -16964.302128 eV Core-core repulsion = 14356.370495 eV Total energy + Delta-G solvation = -2607.931633 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17240 -38.57383 -35.34904 -35.15948 -32.70216 -30.86368 -30.14302 -28.26166 -26.98198 -24.71898 -24.20827 -21.95717 -21.64876 -20.32695 -18.56989 -17.68779 -16.69485 -16.50819 -16.27849 -15.74661 -15.46838 -15.12472 -14.74021 -14.46243 -14.16758 -14.01071 -13.49315 -13.32356 -13.19942 -12.93818 -12.85092 -12.55524 -12.51270 -12.33460 -12.09746 -11.79201 -11.52549 -11.35914 -11.24416 -10.52142 -10.22544 -9.45920 -9.17974 -8.17998 -6.28937 0.92760 1.42247 1.43045 1.54059 1.68149 1.93971 2.42141 3.16127 3.18009 3.67063 3.72343 4.08832 4.18869 4.25380 4.31824 4.38177 4.44836 4.57624 4.66778 4.74160 4.79970 4.80241 4.89459 4.99783 5.04893 5.13029 5.26682 5.34137 5.48984 5.67809 5.79768 5.82990 6.06838 6.15305 6.22251 6.33854 6.84785 6.89233 7.40461 8.94046 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.040091 B = 0.005124 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.250565 B = 5463.668037 C = 5731.963068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.364 5.364 4 N -0.333 5.333 5 C 0.041 3.959 6 C -0.281 4.281 7 C 0.094 3.906 8 C 0.115 3.885 9 N -0.545 5.545 10 C 0.031 3.969 11 C 0.081 3.919 12 C 0.037 3.963 13 C -0.541 4.541 14 H 0.062 0.938 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.261 1.261 21 H 0.089 0.911 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.209 0.791 27 H 0.159 0.841 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.027 0.973 35 H -0.008 1.008 36 H -0.009 1.009 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.128 1.181 -8.951 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.147 5.147 4 N -0.155 5.155 5 C -0.144 4.144 6 C -0.311 4.311 7 C -0.035 4.035 8 C -0.014 4.014 9 N -0.269 5.269 10 C -0.117 4.117 11 C -0.046 4.046 12 C 0.000 4.000 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.185 1.185 21 H 0.108 0.892 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.225 0.775 27 H 0.176 0.824 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.010 0.990 36 H 0.010 0.990 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.336 0.067 -10.311 16.078 hybrid contribution -0.104 0.710 1.972 2.098 sum 12.233 0.776 -8.339 14.825 Atomic orbital electron populations 1.22103 0.94528 1.03510 1.02082 1.21781 0.95139 0.77204 1.04936 1.48857 1.50139 1.12698 1.02999 1.77254 1.23423 1.05558 1.09297 1.24281 0.98705 0.95951 0.95451 1.21507 1.15737 0.98462 0.95438 1.21129 0.99128 0.92840 0.90364 1.20676 0.89916 1.02367 0.88416 1.61956 1.21263 1.14177 1.29552 1.22320 1.00586 0.87617 1.01146 1.22009 0.97457 0.98096 0.87031 1.18904 0.91434 0.95068 0.94629 1.21634 0.93042 1.38689 1.04589 0.91934 1.25929 0.96081 0.96132 1.01433 1.70113 0.99692 1.47672 1.39846 0.85471 0.77590 0.78825 0.79297 1.19929 1.21024 1.18507 0.89219 0.92739 0.93439 0.87922 0.87806 0.77451 0.82354 0.91031 0.88907 0.94858 0.90824 0.93378 0.91157 0.95485 0.98970 0.99022 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 10.24 71.98 0.74 -3.56 16 2 C 0.13 3.03 6.96 86.38 0.60 3.63 16 3 N -0.36 -10.14 3.61 -334.70 -1.21 -11.35 16 4 N -0.33 -9.68 12.58 -57.02 -0.72 -10.39 16 5 C 0.04 0.99 12.03 85.24 1.03 2.01 16 6 C -0.28 -6.91 9.57 21.99 0.21 -6.70 16 7 C 0.09 2.55 5.69 41.40 0.24 2.79 16 8 C 0.12 3.05 5.14 85.55 0.44 3.49 16 9 N -0.54 -18.40 4.64 -927.06 -4.30 -22.71 16 10 C 0.03 1.04 9.12 127.69 1.16 2.21 16 11 C 0.08 3.19 4.90 86.30 0.42 3.61 16 12 C 0.04 1.92 4.90 29.84 0.15 2.07 16 13 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 17 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.05 1.79 8.03 -2.39 -0.02 1.77 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.10 2.11 7.15 -2.39 -0.02 2.09 16 26 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 27 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 29 H 0.09 2.24 7.03 -2.39 -0.02 2.22 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.07 2.25 6.31 -2.39 -0.02 2.23 16 32 H 0.05 1.87 6.47 -2.39 -0.02 1.85 16 33 H 0.07 2.62 7.93 -2.38 -0.02 2.60 16 34 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 35 H -0.01 -0.45 6.55 -2.38 -0.02 -0.47 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -66.57 306.66 2.79 -63.78 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.03 Total: 11.09 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 5.68 Total: -19.67 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -5.94 Total: -100.75 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -66.57 2.79 -63.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352367847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.887 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds