Wall clock time and date at job start Sun Mar 29 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47434 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46865 * 59.99999 * 4 3 2 6 6 C 1.53001 * 109.47219 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47028 * 185.00159 * 6 5 4 8 8 C 1.36943 * 119.99709 * 269.99988 * 7 6 5 9 9 H 1.08001 * 119.99794 * 144.14853 * 8 7 6 10 10 C 1.38808 * 120.00143 * 324.14376 * 8 7 6 11 11 N 1.31623 * 120.00144 * 338.96788 * 10 8 7 12 12 Si 1.86799 * 119.99822 * 158.96856 * 10 8 7 13 13 H 1.48500 * 109.47245 * 0.02562 * 12 10 8 14 14 H 1.48510 * 109.47181 * 120.00217 * 12 10 8 15 15 H 1.48499 * 109.47308 * 239.99634 * 12 10 8 16 16 C 1.46501 * 120.00033 * 90.00246 * 7 6 5 17 17 C 1.53003 * 117.49687 * 183.23521 * 16 7 6 18 18 C 1.52992 * 117.49738 * 114.57662 * 16 7 6 19 19 C 1.53002 * 109.47096 * 300.00208 * 5 4 3 20 20 C 1.52999 * 109.47434 * 60.00140 * 19 5 4 21 21 H 1.09002 * 109.47074 * 59.99714 * 1 2 3 22 22 H 1.08996 * 109.47339 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47231 * 300.00011 * 1 2 3 24 24 H 1.09004 * 109.46913 * 119.99765 * 2 1 3 25 25 H 1.09000 * 109.47047 * 59.99876 * 3 2 1 26 26 H 1.08992 * 109.47193 * 300.00138 * 3 2 1 27 27 H 1.08990 * 109.47162 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47175 * 300.00503 * 4 3 2 29 29 H 1.09004 * 109.47319 * 60.00170 * 5 4 3 30 30 H 1.08990 * 109.47037 * 305.00137 * 6 5 4 31 31 H 1.08998 * 109.46911 * 65.00359 * 6 5 4 32 32 H 0.96995 * 119.99768 * 175.59581 * 11 10 8 33 33 H 1.08998 * 115.54637 * 328.89874 * 16 7 6 34 34 H 1.09003 * 117.50020 * 359.97438 * 17 16 7 35 35 H 1.08999 * 117.49889 * 145.01596 * 17 16 7 36 36 H 1.09004 * 117.49916 * 214.97929 * 18 16 7 37 37 H 1.08997 * 117.50478 * 359.97438 * 18 16 7 38 38 H 1.09000 * 109.47047 * 179.97438 * 19 5 4 39 39 H 1.09002 * 109.47350 * 299.99744 * 19 5 4 40 40 H 1.09002 * 109.47175 * 59.99497 * 20 19 5 41 41 H 1.08996 * 109.47592 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7212 -1.2483 6 6 5.6105 0.7206 -1.2474 7 7 6.0994 0.1368 -2.4989 8 6 6.3271 -1.2110 -2.5826 9 1 6.1198 -1.7375 -3.5025 10 6 6.8245 -1.9003 -1.4853 11 7 7.4580 -1.2506 -0.5318 12 14 6.5949 -3.7500 -1.3617 13 1 5.8559 -4.2378 -2.5538 14 1 7.9234 -4.4107 -1.2989 15 1 5.8234 -4.0722 -0.1344 16 6 6.3445 0.9947 -3.6609 17 6 6.7817 0.3159 -4.9605 18 6 7.7891 1.1312 -4.1459 19 6 3.5705 -0.7214 -1.2483 20 6 2.0405 -0.7214 -1.2489 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.9333 2.4702 0.0002 28 1 3.9330 0.9288 0.8908 29 1 3.7175 1.2349 -2.1385 30 1 5.9741 1.7442 -1.1576 31 1 5.9731 0.1310 -0.4054 32 1 7.7494 -1.7212 0.2647 33 1 5.7013 1.8708 -3.7423 34 1 6.8873 -0.7690 -4.9509 35 1 6.4264 0.7457 -5.8970 36 1 8.0963 2.0971 -4.5469 37 1 8.5572 0.5830 -3.6004 38 1 3.9338 -1.2352 -2.1383 39 1 3.9335 -1.2351 -0.3581 40 1 1.6775 -0.2077 -2.1391 41 1 1.6771 -1.7490 -1.2494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352730818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:11 Heat of formation + Delta-G solvation = 12.586081 kcal Electronic energy + Delta-G solvation = -18053.407357 eV Core-core repulsion = 15547.302356 eV Total energy + Delta-G solvation = -2506.105001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.49502 -36.75299 -33.90214 -32.16145 -30.22725 -29.91008 -26.98554 -24.64395 -22.57621 -21.99503 -21.31918 -20.17730 -19.57665 -18.94203 -16.21769 -15.31726 -14.91738 -14.38069 -13.91950 -13.78833 -13.74906 -13.27909 -13.06685 -12.35606 -12.10677 -11.83361 -11.70345 -11.53723 -11.04531 -10.95091 -10.75881 -10.68960 -10.54797 -10.46192 -10.25150 -10.09202 -9.89431 -9.61029 -9.48917 -9.38547 -9.21569 -9.10052 -8.37450 -6.47968 -5.71570 -3.32956 3.35273 3.45102 3.46682 4.48212 4.99075 5.07814 5.12705 5.25658 5.31785 5.40446 5.66019 5.73745 5.91609 5.92948 5.97019 6.01431 6.05898 6.12577 6.16937 6.19593 6.25431 6.34042 6.37375 6.44468 6.53556 6.61513 6.69771 6.72559 6.75221 6.80847 7.03122 7.10277 7.18280 7.24643 7.27646 7.47349 7.80306 7.87171 8.53893 9.22087 9.85396 10.41854 11.22415 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019746 B = 0.009344 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.686785 B = 2995.814191 C = 3760.460133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.108 4.108 4 C -0.113 4.113 5 C -0.098 4.098 6 C 0.149 3.851 7 N -0.551 5.551 8 C -0.247 4.247 9 H 0.063 0.937 10 C 0.013 3.987 11 N -0.883 5.883 12 Si 0.886 3.114 13 H -0.275 1.275 14 H -0.291 1.291 15 H -0.287 1.287 16 C 0.123 3.877 17 C -0.197 4.197 18 C -0.224 4.224 19 C -0.101 4.101 20 C -0.114 4.114 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.021 0.979 31 H 0.100 0.900 32 H 0.252 0.748 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 4.041 -0.012 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.146 4.146 4 C -0.151 4.151 5 C -0.118 4.118 6 C 0.023 3.977 7 N -0.267 5.267 8 C -0.376 4.376 9 H 0.081 0.919 10 C -0.187 4.187 11 N -0.526 5.526 12 Si 0.716 3.284 13 H -0.200 1.200 14 H -0.218 1.218 15 H -0.213 1.213 16 C 0.013 3.987 17 C -0.236 4.236 18 C -0.265 4.265 19 C -0.138 4.138 20 C -0.152 4.152 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.265 3.954 0.144 10.074 hybrid contribution -0.013 -0.962 0.108 0.968 sum -9.278 2.991 0.252 9.751 Atomic orbital electron populations 1.21841 0.96274 1.01090 1.01058 1.21148 0.94308 0.96537 0.99129 1.21543 0.96541 0.95889 1.00598 1.21550 0.94245 0.99855 0.99474 1.21700 0.99444 0.95268 0.95433 1.21048 0.88919 0.96060 0.91637 1.43426 1.72517 1.03300 1.07488 1.19013 1.36168 0.82949 0.99520 0.91896 1.25059 0.96726 0.97464 0.99435 1.70048 1.37528 1.35618 1.09406 0.86486 0.77521 0.86518 0.77915 1.20021 1.21800 1.21329 1.21208 0.93378 0.95004 0.89060 1.23016 1.05956 1.00113 0.94468 1.23360 0.97117 0.99747 1.06248 1.21464 0.91933 0.97162 1.03235 1.21664 0.97977 0.98891 0.96652 0.93072 0.93153 0.93318 0.91663 0.93141 0.92642 0.92970 0.92386 0.93331 0.96067 0.88217 0.93764 0.89791 0.88571 0.90953 0.91434 0.89121 0.89899 0.93058 0.92878 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.09 -1.33 2.72 -90.62 -0.25 -1.58 16 3 C -0.11 -1.54 5.20 -26.73 -0.14 -1.68 16 4 C -0.11 -1.87 5.20 -26.73 -0.14 -2.01 16 5 C -0.10 -1.88 2.40 -90.62 -0.22 -2.10 16 6 C 0.15 3.40 4.84 -4.04 -0.02 3.38 16 7 N -0.55 -13.28 2.65 -165.67 -0.44 -13.72 16 8 C -0.25 -6.43 6.55 -15.06 -0.10 -6.53 16 9 H 0.06 1.67 6.58 -52.49 -0.35 1.33 16 10 C 0.01 0.35 4.98 -17.43 -0.09 0.27 16 11 N -0.88 -24.78 11.32 55.49 0.63 -24.15 16 12 Si 0.89 21.23 29.61 -169.99 -5.03 16.19 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 C 0.12 2.65 6.56 -67.93 -0.45 2.20 16 17 C -0.20 -3.95 9.80 -26.69 -0.26 -4.21 16 18 C -0.22 -4.65 10.36 -26.70 -0.28 -4.92 16 19 C -0.10 -1.97 4.76 -26.73 -0.13 -2.10 16 20 C -0.11 -1.85 5.21 -26.73 -0.14 -1.99 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.10 2.58 5.37 -51.93 -0.28 2.30 16 32 H 0.25 6.87 8.32 -40.82 -0.34 6.53 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.10 2.09 6.39 -51.93 -0.33 1.76 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.08 1.84 6.35 -51.93 -0.33 1.51 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -26.74 314.00 -9.57 -36.31 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.60 Total: 3.30 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.86 Total: -22.66 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.19 Total: -37.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.74 -9.57 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352730818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.893 kcal (2) G-P(sol) polarization free energy of solvation -26.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds