Wall clock time and date at job start Sun Mar 29 2020 22:05:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.47181 * 2 1
4 4 C 1.52999 * 109.47434 * 179.97438 * 3 2 1
5 5 C 1.53000 * 109.46865 * 59.99999 * 4 3 2
6 6 C 1.53001 * 109.47219 * 180.02562 * 5 4 3
7 7 N 1.46497 * 109.47028 * 185.00159 * 6 5 4
8 8 C 1.36943 * 119.99709 * 269.99988 * 7 6 5
9 9 H 1.08001 * 119.99794 * 144.14853 * 8 7 6
10 10 C 1.38808 * 120.00143 * 324.14376 * 8 7 6
11 11 N 1.31623 * 120.00144 * 338.96788 * 10 8 7
12 12 Si 1.86799 * 119.99822 * 158.96856 * 10 8 7
13 13 H 1.48500 * 109.47245 * 0.02562 * 12 10 8
14 14 H 1.48510 * 109.47181 * 120.00217 * 12 10 8
15 15 H 1.48499 * 109.47308 * 239.99634 * 12 10 8
16 16 C 1.46501 * 120.00033 * 90.00246 * 7 6 5
17 17 C 1.53003 * 117.49687 * 183.23521 * 16 7 6
18 18 C 1.52992 * 117.49738 * 114.57662 * 16 7 6
19 19 C 1.53002 * 109.47096 * 300.00208 * 5 4 3
20 20 C 1.52999 * 109.47434 * 60.00140 * 19 5 4
21 21 H 1.09002 * 109.47074 * 59.99714 * 1 2 3
22 22 H 1.08996 * 109.47339 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.47231 * 300.00011 * 1 2 3
24 24 H 1.09004 * 109.46913 * 119.99765 * 2 1 3
25 25 H 1.09000 * 109.47047 * 59.99876 * 3 2 1
26 26 H 1.08992 * 109.47193 * 300.00138 * 3 2 1
27 27 H 1.08990 * 109.47162 * 179.97438 * 4 3 2
28 28 H 1.09002 * 109.47175 * 300.00503 * 4 3 2
29 29 H 1.09004 * 109.47319 * 60.00170 * 5 4 3
30 30 H 1.08990 * 109.47037 * 305.00137 * 6 5 4
31 31 H 1.08998 * 109.46911 * 65.00359 * 6 5 4
32 32 H 0.96995 * 119.99768 * 175.59581 * 11 10 8
33 33 H 1.08998 * 115.54637 * 328.89874 * 16 7 6
34 34 H 1.09003 * 117.50020 * 359.97438 * 17 16 7
35 35 H 1.08999 * 117.49889 * 145.01596 * 17 16 7
36 36 H 1.09004 * 117.49916 * 214.97929 * 18 16 7
37 37 H 1.08997 * 117.50478 * 359.97438 * 18 16 7
38 38 H 1.09000 * 109.47047 * 179.97438 * 19 5 4
39 39 H 1.09002 * 109.47350 * 299.99744 * 19 5 4
40 40 H 1.09002 * 109.47175 * 59.99497 * 20 19 5
41 41 H 1.08996 * 109.47592 * 179.97438 * 20 19 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4426 0.0006
5 6 4.0805 0.7212 -1.2483
6 6 5.6105 0.7206 -1.2474
7 7 6.0994 0.1368 -2.4989
8 6 6.3271 -1.2110 -2.5826
9 1 6.1198 -1.7375 -3.5025
10 6 6.8245 -1.9003 -1.4853
11 7 7.4580 -1.2506 -0.5318
12 14 6.5949 -3.7500 -1.3617
13 1 5.8559 -4.2378 -2.5538
14 1 7.9234 -4.4107 -1.2989
15 1 5.8234 -4.0722 -0.1344
16 6 6.3445 0.9947 -3.6609
17 6 6.7817 0.3159 -4.9605
18 6 7.7891 1.1312 -4.1459
19 6 3.5705 -0.7214 -1.2483
20 6 2.0405 -0.7214 -1.2489
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3634 0.5138 0.8900
24 1 1.8933 -0.5138 0.8900
25 1 1.6767 1.9563 0.8900
26 1 1.6767 1.9563 -0.8899
27 1 3.9333 2.4702 0.0002
28 1 3.9330 0.9288 0.8908
29 1 3.7175 1.2349 -2.1385
30 1 5.9741 1.7442 -1.1576
31 1 5.9731 0.1310 -0.4054
32 1 7.7494 -1.7212 0.2647
33 1 5.7013 1.8708 -3.7423
34 1 6.8873 -0.7690 -4.9509
35 1 6.4264 0.7457 -5.8970
36 1 8.0963 2.0971 -4.5469
37 1 8.5572 0.5830 -3.6004
38 1 3.9338 -1.2352 -2.1383
39 1 3.9335 -1.2351 -0.3581
40 1 1.6775 -0.2077 -2.1391
41 1 1.6771 -1.7490 -1.2494
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000352730818.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:05:11
Heat of formation + Delta-G solvation = 0.988848 kcal
Electronic energy + Delta-G solvation = -18053.910251 eV
Core-core repulsion = 15547.302356 eV
Total energy + Delta-G solvation = -2506.607894 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-39.94620 -38.41372 -35.57048 -33.84140 -31.84686 -31.41488 -28.50913 -26.38210
-24.18743 -23.35593 -22.97396 -21.76101 -21.12048 -20.41404 -18.16787 -17.15318
-16.54325 -15.97998 -15.64116 -15.10909 -15.02514 -14.78654 -14.58047 -13.98100
-13.53013 -13.35959 -13.26575 -12.92104 -12.81187 -12.61205 -12.36967 -12.32663
-12.09484 -11.88915 -11.87120 -11.67451 -11.43383 -11.33832 -11.15793 -10.96141
-10.69130 -10.67340 -10.34968 -8.45895 -7.72903 -5.38168 1.39929 1.44987
1.52435 2.50185 3.18462 3.45271 3.54884 3.88381 3.99284 4.06588
4.31722 4.35383 4.44132 4.51594 4.59254 4.68054 4.69823 4.77765
4.80971 4.84595 4.90923 4.94496 5.03190 5.07165 5.12452 5.19674
5.27650 5.33810 5.36950 5.38852 5.44293 5.54943 5.57607 5.62194
5.68382 5.73902 5.85826 5.99752 6.50729 7.21260 7.92416 8.42405
9.16306
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.019746 B = 0.009344 C = 0.007444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1417.686785 B = 2995.814191 C = 3760.460133
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.093 4.093
3 C -0.102 4.102
4 C -0.110 4.110
5 C -0.086 4.086
6 C 0.150 3.850
7 N -0.566 5.566
8 C -0.237 4.237
9 H 0.056 0.944
10 C -0.030 4.030
11 N -0.914 5.914
12 Si 0.934 3.066
13 H -0.268 1.268
14 H -0.296 1.296
15 H -0.289 1.289
16 C 0.102 3.898
17 C -0.181 4.181
18 C -0.220 4.220
19 C -0.093 4.093
20 C -0.108 4.108
21 H 0.059 0.941
22 H 0.054 0.946
23 H 0.063 0.937
24 H 0.054 0.946
25 H 0.071 0.929
26 H 0.065 0.935
27 H 0.062 0.938
28 H 0.043 0.957
29 H 0.053 0.947
30 H 0.019 0.981
31 H 0.067 0.933
32 H 0.247 0.753
33 H 0.109 0.891
34 H 0.073 0.927
35 H 0.110 0.890
36 H 0.100 0.900
37 H 0.052 0.948
38 H 0.052 0.948
39 H 0.023 0.977
40 H 0.062 0.938
41 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.497 5.166 -0.842 12.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.111 4.111
3 C -0.139 4.139
4 C -0.148 4.148
5 C -0.107 4.107
6 C 0.025 3.975
7 N -0.283 5.283
8 C -0.368 4.368
9 H 0.073 0.927
10 C -0.227 4.227
11 N -0.559 5.559
12 Si 0.763 3.237
13 H -0.192 1.192
14 H -0.224 1.224
15 H -0.215 1.215
16 C -0.006 4.006
17 C -0.219 4.219
18 C -0.261 4.261
19 C -0.131 4.131
20 C -0.146 4.146
21 H 0.078 0.922
22 H 0.073 0.927
23 H 0.082 0.918
24 H 0.073 0.927
25 H 0.090 0.910
26 H 0.084 0.916
27 H 0.081 0.919
28 H 0.062 0.938
29 H 0.071 0.929
30 H 0.037 0.963
31 H 0.085 0.915
32 H 0.057 0.943
33 H 0.126 0.874
34 H 0.092 0.908
35 H 0.128 0.872
36 H 0.118 0.882
37 H 0.071 0.929
38 H 0.071 0.929
39 H 0.042 0.958
40 H 0.080 0.920
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -11.392 5.083 -0.708 12.495
hybrid contribution 0.695 -1.270 0.309 1.480
sum -10.697 3.813 -0.399 11.363
Atomic orbital electron populations
1.21775 0.93838 1.01816 1.02218 1.21137 0.96297 0.96223 0.97456
1.21511 0.94203 0.96073 1.02138 1.21507 0.96375 0.99700 0.97204
1.21508 0.96668 0.95429 0.97061 1.20975 0.91371 0.94928 0.90238
1.43604 1.73029 1.03126 1.08548 1.19069 1.34541 0.84186 0.98974
0.92678 1.25563 0.97288 1.00302 0.99581 1.70162 1.39266 1.36663
1.09844 0.85716 0.76985 0.83084 0.77873 1.19198 1.22363 1.21518
1.21519 0.94330 0.95932 0.88869 1.23017 1.04704 0.98888 0.95314
1.23266 0.95690 1.00962 1.06184 1.21308 0.94737 0.96756 1.00288
1.21599 0.94946 0.99783 0.98233 0.92240 0.92737 0.91831 0.92741
0.90987 0.91626 0.91949 0.93817 0.92857 0.96294 0.91490 0.94324
0.87370 0.90814 0.87195 0.88204 0.92879 0.92941 0.95828 0.91962
0.92779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.85 9.19 71.98 0.66 -2.19 16
2 C -0.09 -2.45 2.72 -10.79 -0.03 -2.48 16
3 C -0.10 -2.61 5.20 30.59 0.16 -2.45 16
4 C -0.11 -3.50 5.20 30.59 0.16 -3.34 16
5 C -0.09 -3.28 2.40 -10.79 -0.03 -3.31 16
6 C 0.15 6.99 4.84 86.38 0.42 7.41 16
7 N -0.57 -27.63 2.65 -678.06 -1.80 -29.43 16
8 C -0.24 -12.65 6.55 84.03 0.55 -12.10 16
9 H 0.06 2.99 6.58 -2.91 -0.02 2.97 16
10 C -0.03 -1.67 4.98 84.86 0.42 -1.25 16
11 N -0.91 -53.34 11.32 21.65 0.25 -53.09 16
12 Si 0.93 44.85 29.61 68.60 2.03 46.88 16
13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16
14 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16
15 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16
16 C 0.10 4.28 6.56 44.99 0.30 4.58 16
17 C -0.18 -6.94 9.80 30.62 0.30 -6.64 16
18 C -0.22 -8.91 10.36 30.62 0.32 -8.59 16
19 C -0.09 -3.69 4.76 30.59 0.15 -3.55 16
20 C -0.11 -3.34 5.21 30.59 0.16 -3.18 16
21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
30 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16
31 H 0.07 3.62 5.37 -2.39 -0.01 3.61 16
32 H 0.25 14.07 8.32 -92.71 -0.77 13.30 16
33 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16
34 H 0.07 3.17 6.39 -2.39 -0.02 3.16 16
35 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16
36 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16
37 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16
38 H 0.05 2.37 6.35 -2.39 -0.02 2.35 16
39 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16
40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
Total: -1.00 -59.00 314.00 4.97 -54.04
By element:
Atomic # 1 Polarization: 17.73 SS G_CDS: 0.96 Total: 18.69 kcal
Atomic # 6 Polarization: -40.61 SS G_CDS: 3.53 Total: -37.08 kcal
Atomic # 7 Polarization: -80.97 SS G_CDS: -1.55 Total: -82.52 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal
Total: -59.00 4.97 -54.04 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352730818.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.025 kcal
(2) G-P(sol) polarization free energy of solvation -59.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.036 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.989 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds