Wall clock time and date at job start Sun Mar 29 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47434 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46865 * 59.99999 * 4 3 2 6 6 C 1.53001 * 109.47219 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47028 * 185.00159 * 6 5 4 8 8 C 1.36943 * 119.99709 * 269.99988 * 7 6 5 9 9 H 1.08001 * 119.99794 * 144.14853 * 8 7 6 10 10 C 1.38808 * 120.00143 * 324.14376 * 8 7 6 11 11 N 1.31623 * 120.00144 * 338.96788 * 10 8 7 12 12 Si 1.86799 * 119.99822 * 158.96856 * 10 8 7 13 13 H 1.48500 * 109.47245 * 0.02562 * 12 10 8 14 14 H 1.48510 * 109.47181 * 120.00217 * 12 10 8 15 15 H 1.48499 * 109.47308 * 239.99634 * 12 10 8 16 16 C 1.46501 * 120.00033 * 90.00246 * 7 6 5 17 17 C 1.53003 * 117.49687 * 183.23521 * 16 7 6 18 18 C 1.52992 * 117.49738 * 114.57662 * 16 7 6 19 19 C 1.53002 * 109.47096 * 300.00208 * 5 4 3 20 20 C 1.52999 * 109.47434 * 60.00140 * 19 5 4 21 21 H 1.09002 * 109.47074 * 59.99714 * 1 2 3 22 22 H 1.08996 * 109.47339 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47231 * 300.00011 * 1 2 3 24 24 H 1.09004 * 109.46913 * 119.99765 * 2 1 3 25 25 H 1.09000 * 109.47047 * 59.99876 * 3 2 1 26 26 H 1.08992 * 109.47193 * 300.00138 * 3 2 1 27 27 H 1.08990 * 109.47162 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47175 * 300.00503 * 4 3 2 29 29 H 1.09004 * 109.47319 * 60.00170 * 5 4 3 30 30 H 1.08990 * 109.47037 * 305.00137 * 6 5 4 31 31 H 1.08998 * 109.46911 * 65.00359 * 6 5 4 32 32 H 0.96995 * 119.99768 * 175.59581 * 11 10 8 33 33 H 1.08998 * 115.54637 * 328.89874 * 16 7 6 34 34 H 1.09003 * 117.50020 * 359.97438 * 17 16 7 35 35 H 1.08999 * 117.49889 * 145.01596 * 17 16 7 36 36 H 1.09004 * 117.49916 * 214.97929 * 18 16 7 37 37 H 1.08997 * 117.50478 * 359.97438 * 18 16 7 38 38 H 1.09000 * 109.47047 * 179.97438 * 19 5 4 39 39 H 1.09002 * 109.47350 * 299.99744 * 19 5 4 40 40 H 1.09002 * 109.47175 * 59.99497 * 20 19 5 41 41 H 1.08996 * 109.47592 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7212 -1.2483 6 6 5.6105 0.7206 -1.2474 7 7 6.0994 0.1368 -2.4989 8 6 6.3271 -1.2110 -2.5826 9 1 6.1198 -1.7375 -3.5025 10 6 6.8245 -1.9003 -1.4853 11 7 7.4580 -1.2506 -0.5318 12 14 6.5949 -3.7500 -1.3617 13 1 5.8559 -4.2378 -2.5538 14 1 7.9234 -4.4107 -1.2989 15 1 5.8234 -4.0722 -0.1344 16 6 6.3445 0.9947 -3.6609 17 6 6.7817 0.3159 -4.9605 18 6 7.7891 1.1312 -4.1459 19 6 3.5705 -0.7214 -1.2483 20 6 2.0405 -0.7214 -1.2489 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.9333 2.4702 0.0002 28 1 3.9330 0.9288 0.8908 29 1 3.7175 1.2349 -2.1385 30 1 5.9741 1.7442 -1.1576 31 1 5.9731 0.1310 -0.4054 32 1 7.7494 -1.7212 0.2647 33 1 5.7013 1.8708 -3.7423 34 1 6.8873 -0.7690 -4.9509 35 1 6.4264 0.7457 -5.8970 36 1 8.0963 2.0971 -4.5469 37 1 8.5572 0.5830 -3.6004 38 1 3.9338 -1.2352 -2.1383 39 1 3.9335 -1.2351 -0.3581 40 1 1.6775 -0.2077 -2.1391 41 1 1.6771 -1.7490 -1.2494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352730818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:11 Heat of formation + Delta-G solvation = 0.988848 kcal Electronic energy + Delta-G solvation = -18053.910251 eV Core-core repulsion = 15547.302356 eV Total energy + Delta-G solvation = -2506.607894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94620 -38.41372 -35.57048 -33.84140 -31.84686 -31.41488 -28.50913 -26.38210 -24.18743 -23.35593 -22.97396 -21.76101 -21.12048 -20.41404 -18.16787 -17.15318 -16.54325 -15.97998 -15.64116 -15.10909 -15.02514 -14.78654 -14.58047 -13.98100 -13.53013 -13.35959 -13.26575 -12.92104 -12.81187 -12.61205 -12.36967 -12.32663 -12.09484 -11.88915 -11.87120 -11.67451 -11.43383 -11.33832 -11.15793 -10.96141 -10.69130 -10.67340 -10.34968 -8.45895 -7.72903 -5.38168 1.39929 1.44987 1.52435 2.50185 3.18462 3.45271 3.54884 3.88381 3.99284 4.06588 4.31722 4.35383 4.44132 4.51594 4.59254 4.68054 4.69823 4.77765 4.80971 4.84595 4.90923 4.94496 5.03190 5.07165 5.12452 5.19674 5.27650 5.33810 5.36950 5.38852 5.44293 5.54943 5.57607 5.62194 5.68382 5.73902 5.85826 5.99752 6.50729 7.21260 7.92416 8.42405 9.16306 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019746 B = 0.009344 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.686785 B = 2995.814191 C = 3760.460133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.102 4.102 4 C -0.110 4.110 5 C -0.086 4.086 6 C 0.150 3.850 7 N -0.566 5.566 8 C -0.237 4.237 9 H 0.056 0.944 10 C -0.030 4.030 11 N -0.914 5.914 12 Si 0.934 3.066 13 H -0.268 1.268 14 H -0.296 1.296 15 H -0.289 1.289 16 C 0.102 3.898 17 C -0.181 4.181 18 C -0.220 4.220 19 C -0.093 4.093 20 C -0.108 4.108 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.247 0.753 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 5.166 -0.842 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.139 4.139 4 C -0.148 4.148 5 C -0.107 4.107 6 C 0.025 3.975 7 N -0.283 5.283 8 C -0.368 4.368 9 H 0.073 0.927 10 C -0.227 4.227 11 N -0.559 5.559 12 Si 0.763 3.237 13 H -0.192 1.192 14 H -0.224 1.224 15 H -0.215 1.215 16 C -0.006 4.006 17 C -0.219 4.219 18 C -0.261 4.261 19 C -0.131 4.131 20 C -0.146 4.146 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.392 5.083 -0.708 12.495 hybrid contribution 0.695 -1.270 0.309 1.480 sum -10.697 3.813 -0.399 11.363 Atomic orbital electron populations 1.21775 0.93838 1.01816 1.02218 1.21137 0.96297 0.96223 0.97456 1.21511 0.94203 0.96073 1.02138 1.21507 0.96375 0.99700 0.97204 1.21508 0.96668 0.95429 0.97061 1.20975 0.91371 0.94928 0.90238 1.43604 1.73029 1.03126 1.08548 1.19069 1.34541 0.84186 0.98974 0.92678 1.25563 0.97288 1.00302 0.99581 1.70162 1.39266 1.36663 1.09844 0.85716 0.76985 0.83084 0.77873 1.19198 1.22363 1.21518 1.21519 0.94330 0.95932 0.88869 1.23017 1.04704 0.98888 0.95314 1.23266 0.95690 1.00962 1.06184 1.21308 0.94737 0.96756 1.00288 1.21599 0.94946 0.99783 0.98233 0.92240 0.92737 0.91831 0.92741 0.90987 0.91626 0.91949 0.93817 0.92857 0.96294 0.91490 0.94324 0.87370 0.90814 0.87195 0.88204 0.92879 0.92941 0.95828 0.91962 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.19 71.98 0.66 -2.19 16 2 C -0.09 -2.45 2.72 -10.79 -0.03 -2.48 16 3 C -0.10 -2.61 5.20 30.59 0.16 -2.45 16 4 C -0.11 -3.50 5.20 30.59 0.16 -3.34 16 5 C -0.09 -3.28 2.40 -10.79 -0.03 -3.31 16 6 C 0.15 6.99 4.84 86.38 0.42 7.41 16 7 N -0.57 -27.63 2.65 -678.06 -1.80 -29.43 16 8 C -0.24 -12.65 6.55 84.03 0.55 -12.10 16 9 H 0.06 2.99 6.58 -2.91 -0.02 2.97 16 10 C -0.03 -1.67 4.98 84.86 0.42 -1.25 16 11 N -0.91 -53.34 11.32 21.65 0.25 -53.09 16 12 Si 0.93 44.85 29.61 68.60 2.03 46.88 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 15 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 16 C 0.10 4.28 6.56 44.99 0.30 4.58 16 17 C -0.18 -6.94 9.80 30.62 0.30 -6.64 16 18 C -0.22 -8.91 10.36 30.62 0.32 -8.59 16 19 C -0.09 -3.69 4.76 30.59 0.15 -3.55 16 20 C -0.11 -3.34 5.21 30.59 0.16 -3.18 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 31 H 0.07 3.62 5.37 -2.39 -0.01 3.61 16 32 H 0.25 14.07 8.32 -92.71 -0.77 13.30 16 33 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 34 H 0.07 3.17 6.39 -2.39 -0.02 3.16 16 35 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.05 2.37 6.35 -2.39 -0.02 2.35 16 39 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -59.00 314.00 4.97 -54.04 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.96 Total: 18.69 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.53 Total: -37.08 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.55 Total: -82.52 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -59.00 4.97 -54.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352730818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.025 kcal (2) G-P(sol) polarization free energy of solvation -59.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds