Wall clock time and date at job start Sun Mar 29 2020 21:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99403 * 2 1 4 4 H 1.48502 * 109.46848 * 270.00052 * 3 2 1 5 5 H 1.48493 * 109.47174 * 30.00090 * 3 2 1 6 6 H 1.48498 * 109.47155 * 150.00413 * 3 2 1 7 7 C 1.38812 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00106 * 159.58201 * 7 2 1 9 9 N 1.36935 * 119.99648 * 339.58194 * 7 2 1 10 10 C 1.46504 * 120.00408 * 323.45167 * 9 7 2 11 11 C 1.53004 * 109.47018 * 270.00246 * 10 9 7 12 12 C 1.50471 * 109.79022 * 65.48498 * 11 10 9 13 13 C 1.54064 * 112.50012 * 213.95871 * 12 11 10 14 14 C 1.54076 * 112.81340 * 318.28404 * 13 12 11 15 15 C 1.50469 * 112.49425 * 318.28362 * 14 13 12 16 16 C 1.54237 * 108.52621 * 94.15495 * 15 14 13 17 17 C 1.45545 * 112.40172 * 280.01044 * 16 15 14 18 18 C 1.46504 * 119.99925 * 143.44934 * 9 7 2 19 19 C 1.53002 * 117.49693 * 3.24302 * 18 9 7 20 20 C 1.52999 * 117.50115 * 294.58122 * 18 9 7 21 21 H 0.96994 * 120.00568 * 355.66613 * 1 2 3 22 22 H 1.08998 * 109.47173 * 149.99718 * 10 9 7 23 23 H 1.08995 * 109.46903 * 29.99751 * 10 9 7 24 24 H 1.08998 * 109.62174 * 304.99765 * 11 10 9 25 25 H 1.09000 * 108.87677 * 334.73555 * 12 11 10 26 26 H 1.09001 * 108.87788 * 93.17461 * 12 11 10 27 27 H 1.09006 * 108.81541 * 197.42546 * 13 12 11 28 28 H 1.08999 * 108.81505 * 79.13896 * 13 12 11 29 29 H 1.08996 * 108.87430 * 197.50739 * 14 13 12 30 30 H 1.08996 * 108.79899 * 79.00686 * 14 13 12 31 31 H 1.09002 * 109.63346 * 334.43533 * 15 14 13 32 32 H 1.09008 * 109.78614 * 213.96001 * 15 14 13 33 33 H 1.08995 * 108.89870 * 159.25796 * 16 15 14 34 34 H 1.08998 * 108.89625 * 40.75951 * 16 15 14 35 35 H 1.09003 * 108.89599 * 301.18168 * 17 16 15 36 36 H 1.09000 * 108.81968 * 182.63371 * 17 16 15 37 37 H 1.08999 * 115.54807 * 148.90877 * 18 9 7 38 38 H 1.09000 * 117.49836 * 359.97438 * 19 18 9 39 39 H 1.09000 * 117.49974 * 145.01952 * 19 18 9 40 40 H 1.08992 * 117.50054 * 214.97784 * 20 18 9 41 41 H 1.09003 * 117.49939 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0394 -1.2313 -0.3268 9 7 1.3903 -2.3509 0.4127 10 6 0.4318 -2.3085 1.5199 11 6 1.1688 -2.5350 2.8414 12 6 2.1089 -1.3896 3.1032 13 6 3.3936 -1.8350 3.8276 14 6 3.1234 -2.8560 4.9494 15 6 1.9057 -2.5092 5.7625 16 6 0.6943 -3.2630 5.1767 17 6 0.1500 -2.6065 3.9972 18 6 1.6852 -3.6225 -0.2525 19 6 2.7505 -3.6148 -1.3507 20 6 1.2723 -3.7653 -1.7187 21 1 -0.4851 0.8375 0.0635 22 1 -0.3165 -3.0891 1.3827 23 1 -0.0580 -1.3350 1.5393 24 1 1.7320 -3.4668 2.7914 25 1 2.3810 -0.9322 2.1519 26 1 1.5979 -0.6469 3.7159 27 1 3.8759 -0.9579 4.2592 28 1 4.0701 -2.2832 3.0999 29 1 3.9899 -2.8919 5.6097 30 1 2.9804 -3.8396 4.5022 31 1 1.7269 -1.4350 5.7143 32 1 2.0569 -2.8089 6.7996 33 1 -0.0842 -3.3250 5.9370 34 1 1.0035 -4.2729 4.9074 35 1 -0.1521 -1.5939 4.2646 36 1 -0.7273 -3.1590 3.6607 37 1 1.6186 -4.5093 0.3778 38 1 3.2315 -2.6636 -1.5786 39 1 3.3844 -4.4967 -1.4432 40 1 0.9343 -4.7460 -2.0532 41 1 0.7815 -2.9130 -2.1887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352735967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:38 Heat of formation + Delta-G solvation = 21.807730 kcal Electronic energy + Delta-G solvation = -18300.851584 eV Core-core repulsion = 15795.146464 eV Total energy + Delta-G solvation = -2505.705120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.63895 -36.73400 -33.81446 -32.07706 -31.62909 -29.75209 -26.21996 -24.19796 -23.76602 -21.86297 -21.26842 -19.95565 -19.69174 -18.28371 -16.28847 -15.31110 -14.99023 -14.56708 -14.37255 -13.95910 -13.79412 -13.33348 -12.66352 -12.39340 -12.19706 -11.95426 -11.71447 -11.43305 -11.03833 -10.92465 -10.68298 -10.42115 -10.32986 -10.24575 -10.15572 -9.95506 -9.80203 -9.65264 -9.45353 -9.38034 -9.32021 -9.09290 -8.35553 -6.48469 -5.73662 -3.34817 3.34385 3.43003 3.45407 4.45989 4.99133 5.05476 5.13713 5.29238 5.35179 5.42407 5.73270 5.80087 5.85321 5.89927 5.97602 6.04566 6.09212 6.11147 6.21199 6.33248 6.39800 6.50512 6.53398 6.54160 6.62579 6.64490 6.69737 6.73569 6.82999 6.87726 7.04749 7.14108 7.22243 7.25454 7.27741 7.64126 7.80979 7.87471 8.52903 9.20358 9.83104 10.40702 11.19951 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.010184 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.748657 B = 2748.647036 C = 3392.622207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.013 3.987 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.150 3.850 11 C -0.091 4.091 12 C -0.121 4.121 13 C -0.111 4.111 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.116 4.116 18 C 0.124 3.876 19 C -0.197 4.197 20 C -0.224 4.224 21 H 0.254 0.746 22 H 0.021 0.979 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.105 0.895 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -5.328 7.728 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.081 0.919 9 N -0.267 5.267 10 C 0.024 3.976 11 C -0.112 4.112 12 C -0.158 4.158 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.154 4.154 18 C 0.015 3.985 19 C -0.236 4.236 20 C -0.265 4.265 21 H 0.064 0.936 22 H 0.040 0.960 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.123 0.877 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.510 -5.156 7.698 9.599 hybrid contribution 0.426 0.846 -0.053 0.948 sum 2.935 -4.310 7.645 9.254 Atomic orbital electron populations 1.70029 1.05447 1.25894 1.51017 1.25116 0.94927 0.98452 1.00277 0.86569 0.79786 0.84240 0.77895 1.21305 1.21412 1.20088 1.18942 0.93498 0.85208 1.40057 0.91921 1.43408 1.48707 1.01816 1.32790 1.21056 0.90082 1.02667 0.83778 1.21454 0.96037 0.98086 0.95607 1.21543 0.94239 0.97757 1.02236 1.21883 0.98979 0.97540 0.96513 1.21320 0.96971 0.99862 0.97089 1.21306 0.95321 1.00871 0.97732 1.20452 0.97272 0.99356 0.97593 1.20527 0.98912 1.00417 0.95538 1.21191 1.00016 0.90631 0.86661 1.23016 0.91876 1.01677 1.06997 1.23366 0.97377 1.00612 1.05161 0.93614 0.96038 0.88338 0.92966 0.87735 0.94409 0.93734 0.92782 0.93631 0.92492 0.91767 0.93086 0.93467 0.92803 0.92775 0.93061 0.89828 0.88574 0.90976 0.91437 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 11.33 55.49 0.63 -23.95 16 2 C 0.01 0.34 4.55 -17.43 -0.08 0.26 16 3 Si 0.89 21.03 29.60 -169.99 -5.03 16.00 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.40 6.35 -15.06 -0.10 -6.49 16 8 H 0.06 1.65 6.61 -52.49 -0.35 1.30 16 9 N -0.55 -13.20 2.69 -165.66 -0.45 -13.65 16 10 C 0.15 3.41 4.77 -4.04 -0.02 3.39 16 11 C -0.09 -1.75 2.07 -91.23 -0.19 -1.94 16 12 C -0.12 -2.38 4.83 -27.44 -0.13 -2.51 16 13 C -0.11 -1.89 5.85 -25.61 -0.15 -2.04 16 14 C -0.11 -1.67 5.32 -27.43 -0.15 -1.81 16 15 C -0.11 -1.58 5.61 -27.35 -0.15 -1.74 16 16 C -0.11 -1.55 5.26 -29.60 -0.16 -1.70 16 17 C -0.12 -1.92 4.69 -29.60 -0.14 -2.06 16 18 C 0.12 2.67 6.56 -67.93 -0.45 2.23 16 19 C -0.20 -3.94 9.80 -26.69 -0.26 -4.20 16 20 C -0.22 -4.65 10.36 -26.69 -0.28 -4.92 16 21 H 0.25 6.88 8.32 -40.82 -0.34 6.55 16 22 H 0.02 0.48 7.97 -51.93 -0.41 0.06 16 23 H 0.10 2.54 5.40 -51.93 -0.28 2.26 16 24 H 0.05 1.01 6.97 -51.93 -0.36 0.65 16 25 H 0.10 2.42 4.64 -51.93 -0.24 2.18 16 26 H 0.04 0.74 6.63 -51.93 -0.34 0.39 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.84 6.63 -51.93 -0.34 0.50 16 31 H 0.06 0.94 6.98 -51.93 -0.36 0.58 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.75 7.47 -51.93 -0.39 0.36 16 35 H 0.05 0.92 7.47 -51.93 -0.39 0.54 16 36 H 0.05 0.83 7.90 -51.93 -0.41 0.42 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.10 2.08 6.40 -51.93 -0.33 1.75 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 303.61 15.07 4.58 4.58 Total: -1.00 -26.41 303.61 -9.67 -36.08 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.15 Total: 4.49 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.24 Total: -23.54 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.18 Total: -37.60 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.41 -9.67 -36.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352735967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.885 kcal (2) G-P(sol) polarization free energy of solvation -26.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds