Wall clock time and date at job start Sun Mar 29 2020 21:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99403 * 2 1 4 4 H 1.48502 * 109.46848 * 270.00052 * 3 2 1 5 5 H 1.48493 * 109.47174 * 30.00090 * 3 2 1 6 6 H 1.48498 * 109.47155 * 150.00413 * 3 2 1 7 7 C 1.38812 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00106 * 159.58201 * 7 2 1 9 9 N 1.36935 * 119.99648 * 339.58194 * 7 2 1 10 10 C 1.46504 * 120.00408 * 323.45167 * 9 7 2 11 11 C 1.53004 * 109.47018 * 270.00246 * 10 9 7 12 12 C 1.50471 * 109.79022 * 65.48498 * 11 10 9 13 13 C 1.54064 * 112.50012 * 213.95871 * 12 11 10 14 14 C 1.54076 * 112.81340 * 318.28404 * 13 12 11 15 15 C 1.50469 * 112.49425 * 318.28362 * 14 13 12 16 16 C 1.54237 * 108.52621 * 94.15495 * 15 14 13 17 17 C 1.45545 * 112.40172 * 280.01044 * 16 15 14 18 18 C 1.46504 * 119.99925 * 143.44934 * 9 7 2 19 19 C 1.53002 * 117.49693 * 3.24302 * 18 9 7 20 20 C 1.52999 * 117.50115 * 294.58122 * 18 9 7 21 21 H 0.96994 * 120.00568 * 355.66613 * 1 2 3 22 22 H 1.08998 * 109.47173 * 149.99718 * 10 9 7 23 23 H 1.08995 * 109.46903 * 29.99751 * 10 9 7 24 24 H 1.08998 * 109.62174 * 304.99765 * 11 10 9 25 25 H 1.09000 * 108.87677 * 334.73555 * 12 11 10 26 26 H 1.09001 * 108.87788 * 93.17461 * 12 11 10 27 27 H 1.09006 * 108.81541 * 197.42546 * 13 12 11 28 28 H 1.08999 * 108.81505 * 79.13896 * 13 12 11 29 29 H 1.08996 * 108.87430 * 197.50739 * 14 13 12 30 30 H 1.08996 * 108.79899 * 79.00686 * 14 13 12 31 31 H 1.09002 * 109.63346 * 334.43533 * 15 14 13 32 32 H 1.09008 * 109.78614 * 213.96001 * 15 14 13 33 33 H 1.08995 * 108.89870 * 159.25796 * 16 15 14 34 34 H 1.08998 * 108.89625 * 40.75951 * 16 15 14 35 35 H 1.09003 * 108.89599 * 301.18168 * 17 16 15 36 36 H 1.09000 * 108.81968 * 182.63371 * 17 16 15 37 37 H 1.08999 * 115.54807 * 148.90877 * 18 9 7 38 38 H 1.09000 * 117.49836 * 359.97438 * 19 18 9 39 39 H 1.09000 * 117.49974 * 145.01952 * 19 18 9 40 40 H 1.08992 * 117.50054 * 214.97784 * 20 18 9 41 41 H 1.09003 * 117.49939 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0394 -1.2313 -0.3268 9 7 1.3903 -2.3509 0.4127 10 6 0.4318 -2.3085 1.5199 11 6 1.1688 -2.5350 2.8414 12 6 2.1089 -1.3896 3.1032 13 6 3.3936 -1.8350 3.8276 14 6 3.1234 -2.8560 4.9494 15 6 1.9057 -2.5092 5.7625 16 6 0.6943 -3.2630 5.1767 17 6 0.1500 -2.6065 3.9972 18 6 1.6852 -3.6225 -0.2525 19 6 2.7505 -3.6148 -1.3507 20 6 1.2723 -3.7653 -1.7187 21 1 -0.4851 0.8375 0.0635 22 1 -0.3165 -3.0891 1.3827 23 1 -0.0580 -1.3350 1.5393 24 1 1.7320 -3.4668 2.7914 25 1 2.3810 -0.9322 2.1519 26 1 1.5979 -0.6469 3.7159 27 1 3.8759 -0.9579 4.2592 28 1 4.0701 -2.2832 3.0999 29 1 3.9899 -2.8919 5.6097 30 1 2.9804 -3.8396 4.5022 31 1 1.7269 -1.4350 5.7143 32 1 2.0569 -2.8089 6.7996 33 1 -0.0842 -3.3250 5.9370 34 1 1.0035 -4.2729 4.9074 35 1 -0.1521 -1.5939 4.2646 36 1 -0.7273 -3.1590 3.6607 37 1 1.6186 -4.5093 0.3778 38 1 3.2315 -2.6636 -1.5786 39 1 3.3844 -4.4967 -1.4432 40 1 0.9343 -4.7460 -2.0532 41 1 0.7815 -2.9130 -2.1887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352735967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:37 Heat of formation + Delta-G solvation = 10.300465 kcal Electronic energy + Delta-G solvation = -18301.350576 eV Core-core repulsion = 15795.146464 eV Total energy + Delta-G solvation = -2506.204112 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08713 -38.39318 -35.51967 -33.63397 -33.10989 -31.49185 -27.96940 -25.80631 -25.21369 -23.44658 -22.90387 -21.57590 -21.14597 -19.75324 -18.19578 -17.11787 -16.52826 -16.19190 -15.80955 -15.51352 -15.26603 -14.78232 -14.23437 -13.98132 -13.78763 -13.48598 -13.23376 -12.93071 -12.80696 -12.67326 -12.49439 -12.17365 -11.98460 -11.74405 -11.47743 -11.45123 -11.27583 -11.22916 -11.05073 -10.93485 -10.88707 -10.68620 -10.30721 -8.44657 -7.72834 -5.37588 1.41291 1.45766 1.53112 2.50284 3.18876 3.45762 3.54173 3.84572 4.03140 4.15320 4.32704 4.43850 4.45989 4.47132 4.50445 4.59853 4.63219 4.65583 4.75677 4.94597 4.97014 5.03251 5.06258 5.10914 5.23866 5.31043 5.36011 5.40301 5.43655 5.49628 5.55209 5.56024 5.58153 5.62999 5.72207 5.74162 6.00460 6.04345 6.51796 7.21354 7.92278 8.43164 9.16191 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.010184 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.748657 B = 2748.647036 C = 3392.622207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.030 4.030 3 Si 0.935 3.065 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.237 4.237 8 H 0.055 0.945 9 N -0.565 5.565 10 C 0.151 3.849 11 C -0.078 4.078 12 C -0.117 4.117 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.108 4.108 18 C 0.104 3.896 19 C -0.181 4.181 20 C -0.221 4.221 21 H 0.248 0.752 22 H 0.018 0.982 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 -6.998 9.230 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.228 4.228 3 Si 0.763 3.237 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.073 0.927 9 N -0.282 5.282 10 C 0.026 3.974 11 C -0.099 4.099 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.004 4.004 19 C -0.219 4.219 20 C -0.262 4.262 21 H 0.058 0.942 22 H 0.036 0.964 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.617 -6.841 9.198 12.021 hybrid contribution 0.089 1.316 -0.567 1.436 sum 3.706 -5.525 8.631 10.897 Atomic orbital electron populations 1.70147 1.06565 1.25918 1.53177 1.25610 0.95380 1.00678 1.01087 0.85793 0.78977 0.81419 0.77483 1.21567 1.21810 1.19387 1.18990 0.93098 0.86138 1.38483 0.92704 1.43580 1.48688 1.02294 1.33666 1.20981 0.90249 1.00705 0.85469 1.21232 0.96151 0.97796 0.94683 1.21419 0.95693 0.97695 1.00581 1.21826 0.97023 0.98616 0.97091 1.21285 0.98329 0.98643 0.96471 1.21313 0.94613 1.00129 0.99042 1.20425 0.98072 0.99287 0.96782 1.20462 0.98263 1.00278 0.95655 1.21487 1.01382 0.90269 0.87274 1.23016 0.91647 1.02164 1.05121 1.23276 0.97977 1.00753 1.04208 0.94228 0.96370 0.91551 0.92680 0.91429 0.95047 0.93146 0.93720 0.91514 0.92502 0.92923 0.90474 0.91459 0.92058 0.93829 0.92918 0.87524 0.90767 0.87276 0.88262 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.87 11.33 21.65 0.25 -52.62 16 2 C -0.03 -1.65 4.55 84.86 0.39 -1.27 16 3 Si 0.93 44.37 29.60 68.60 2.03 46.40 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.24 -12.50 6.35 84.03 0.53 -11.97 16 8 H 0.06 2.95 6.61 -2.91 -0.02 2.93 16 9 N -0.57 -27.40 2.69 -678.02 -1.82 -29.23 16 10 C 0.15 7.01 4.77 86.38 0.41 7.42 16 11 C -0.08 -2.96 2.07 -11.19 -0.02 -2.98 16 12 C -0.12 -4.59 4.83 30.14 0.15 -4.44 16 13 C -0.11 -3.50 5.85 31.32 0.18 -3.32 16 14 C -0.11 -2.85 5.32 30.14 0.16 -2.69 16 15 C -0.11 -2.77 5.61 30.19 0.17 -2.60 16 16 C -0.11 -2.75 5.26 28.74 0.15 -2.59 16 17 C -0.11 -3.46 4.69 28.74 0.13 -3.33 16 18 C 0.10 4.37 6.56 44.99 0.30 4.67 16 19 C -0.18 -6.94 9.80 30.62 0.30 -6.64 16 20 C -0.22 -8.95 10.36 30.62 0.32 -8.64 16 21 H 0.25 14.04 8.32 -92.71 -0.77 13.27 16 22 H 0.02 0.82 7.97 -2.39 -0.02 0.80 16 23 H 0.07 3.56 5.40 -2.39 -0.01 3.55 16 24 H 0.05 2.05 6.97 -2.39 -0.02 2.04 16 25 H 0.07 3.19 4.64 -2.39 -0.01 3.18 16 26 H 0.03 1.24 6.63 -2.39 -0.02 1.22 16 27 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.49 6.63 -2.39 -0.02 1.48 16 31 H 0.05 1.42 6.98 -2.39 -0.02 1.40 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.49 7.47 -2.39 -0.02 1.48 16 35 H 0.04 1.47 7.47 -2.39 -0.02 1.45 16 36 H 0.05 1.65 7.90 -2.39 -0.02 1.63 16 37 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 38 H 0.07 3.18 6.40 -2.39 -0.02 3.17 16 39 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.10 3.36 8.14 -2.39 -0.02 3.35 16 41 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -58.03 303.61 4.59 -53.44 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.98 Total: 20.42 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 3.17 Total: -38.40 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -1.58 Total: -81.85 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -58.03 4.59 -53.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352735967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.736 kcal (2) G-P(sol) polarization free energy of solvation -58.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds