Wall clock time and date at job start Sun Mar 29 2020 22:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51432 * 121.11070 * 2 1 4 4 C 1.53303 * 108.23755 * 229.00138 * 3 2 1 5 5 N 1.46824 * 109.40126 * 306.20716 * 4 3 2 6 6 C 1.46901 * 111.00020 * 189.75551 * 5 4 3 7 7 C 1.53008 * 109.46906 * 317.16250 * 6 5 4 8 8 C 1.52996 * 109.47174 * 309.34808 * 7 6 5 9 9 C 1.52993 * 109.47004 * 69.35073 * 7 6 5 10 10 C 1.52999 * 109.46914 * 189.35061 * 7 6 5 11 11 C 1.50703 * 109.47227 * 180.02562 * 10 7 6 12 12 H 1.08001 * 119.99682 * 359.97438 * 11 10 7 13 13 C 1.37874 * 120.00196 * 180.02562 * 11 10 7 14 14 N 1.31515 * 119.99606 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00192 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46869 * 90.00304 * 15 13 11 17 17 H 1.48492 * 109.47470 * 210.00593 * 15 13 11 18 18 H 1.48504 * 109.47284 * 330.00661 * 15 13 11 19 19 C 1.46821 * 111.56616 * 65.39101 * 5 4 3 20 20 C 1.51438 * 121.10648 * 179.97438 * 2 1 3 21 21 H 1.08004 * 119.99729 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.00351 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.71377 * 348.68798 * 3 2 1 24 24 H 1.09000 * 109.71059 * 109.31775 * 3 2 1 25 25 H 1.09001 * 109.48270 * 66.18694 * 4 3 2 26 26 H 1.09002 * 109.48509 * 186.22942 * 4 3 2 27 27 H 1.08993 * 109.47610 * 77.16446 * 6 5 4 28 28 H 1.08998 * 109.47397 * 197.16633 * 6 5 4 29 29 H 1.09003 * 109.47142 * 71.43603 * 8 7 6 30 30 H 1.08999 * 109.47181 * 191.43568 * 8 7 6 31 31 H 1.08996 * 109.47461 * 311.43479 * 8 7 6 32 32 H 1.09007 * 109.47318 * 26.08717 * 9 7 6 33 33 H 1.09003 * 109.47115 * 146.08639 * 9 7 6 34 34 H 1.08998 * 109.47204 * 266.08199 * 9 7 6 35 35 H 1.09001 * 109.46940 * 299.99799 * 10 7 6 36 36 H 1.08997 * 109.47233 * 59.99952 * 10 7 6 37 37 H 0.97004 * 119.99220 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.48776 * 174.63590 * 19 5 4 39 39 H 1.08998 * 109.48562 * 54.58796 * 19 5 4 40 40 H 1.08998 * 109.70483 * 250.68035 * 20 2 1 41 41 H 1.08997 * 109.70799 * 11.30738 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0925 1.2965 0.0000 4 6 3.1582 1.2137 -1.0989 5 7 3.9617 -0.0003 -0.9086 6 6 5.1332 -0.0006 -1.7949 7 6 4.7195 0.4807 -3.1872 8 6 3.4958 -0.3085 -3.6569 9 6 4.3747 1.9702 -3.1302 10 6 5.8744 0.2617 -4.1665 11 6 5.4672 0.7363 -5.5377 12 1 4.4830 1.1522 -5.6949 13 6 6.3508 0.6387 -6.5916 14 7 5.9951 1.0525 -7.7882 15 14 8.0528 -0.0813 -6.3198 16 1 8.0109 -1.5488 -6.5429 17 1 9.0097 0.5370 -7.2722 18 1 8.4910 0.1955 -4.9282 19 6 3.1582 -1.2145 -1.0983 20 6 2.0924 -1.2966 0.0006 21 1 -0.5400 0.9354 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.4210 2.1311 -0.2013 24 1 2.5731 1.4359 0.9684 25 1 2.6728 1.1793 -2.0742 26 1 3.8047 2.0897 -1.0451 27 1 5.8945 0.6667 -1.3912 28 1 5.5358 -1.0111 -1.8647 29 1 2.6218 0.0015 -3.0841 30 1 3.3235 -0.1154 -4.7158 31 1 3.6704 -1.3736 -3.5056 32 1 4.9142 2.4368 -2.3059 33 1 4.6620 2.4458 -4.0679 34 1 3.3022 2.0893 -2.9762 35 1 6.7461 0.8239 -3.8318 36 1 6.1200 -0.7995 -4.2071 37 1 6.6170 0.9841 -8.5296 38 1 3.8046 -2.0905 -1.0440 39 1 2.6727 -1.1805 -2.0736 40 1 2.5730 -1.4355 0.9690 41 1 1.4208 -2.1313 -0.2002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353331091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:35 Heat of formation + Delta-G solvation = 40.474567 kcal Electronic energy + Delta-G solvation = -18086.886585 eV Core-core repulsion = 15581.990919 eV Total energy + Delta-G solvation = -2504.895665 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05489 -36.46850 -33.53719 -31.98576 -31.19946 -28.60091 -27.79443 -26.86043 -25.19765 -22.86778 -22.11989 -20.92620 -18.25940 -18.07007 -16.65549 -15.42523 -15.21383 -14.80394 -14.67537 -14.15257 -13.91150 -13.40069 -13.10175 -12.83947 -12.55791 -12.49446 -12.05724 -11.82804 -11.47686 -11.31757 -10.94479 -10.80338 -10.66048 -10.59845 -10.38415 -10.20855 -10.06319 -9.86426 -9.63995 -9.60289 -9.04585 -8.97914 -8.52252 -7.57588 -6.02896 -3.99217 2.29094 3.30681 3.38697 3.42287 4.27828 4.46202 4.76323 4.87333 5.29306 5.31225 5.35117 5.42631 5.52486 5.54470 5.63644 5.73323 5.78375 5.84752 5.88251 5.99989 6.07536 6.13155 6.15922 6.21501 6.32002 6.35862 6.43692 6.58355 6.61726 6.66718 6.87157 6.97093 7.08925 7.19572 7.28449 7.38649 7.49247 7.50183 7.81622 8.56106 9.02131 9.60259 11.10126 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.044255 B = 0.006058 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.543212 B = 4620.992130 C = 4740.466417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.108 4.108 3 C -0.089 4.089 4 C 0.034 3.966 5 N -0.535 5.535 6 C 0.061 3.939 7 C -0.080 4.080 8 C -0.145 4.145 9 C -0.151 4.151 10 C -0.002 4.002 11 C -0.509 4.509 12 H 0.076 0.924 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.876 3.124 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.032 3.968 20 C -0.083 4.083 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.015 0.985 36 H 0.009 0.991 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -2.252 15.050 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.109 4.109 3 C -0.126 4.126 4 C -0.093 4.093 5 N -0.258 5.258 6 C -0.067 4.067 7 C -0.081 4.081 8 C -0.201 4.201 9 C -0.208 4.208 10 C -0.040 4.040 11 C -0.547 4.547 12 H 0.094 0.906 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.704 3.296 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.096 4.096 20 C -0.121 4.121 21 H 0.113 0.887 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.824 -2.237 15.361 16.957 hybrid contribution 0.703 -0.451 -0.839 1.184 sum -6.121 -2.689 14.522 15.987 Atomic orbital electron populations 1.23535 0.95004 1.01467 1.04858 1.22079 0.94791 0.96372 0.97626 1.21013 0.97104 0.94277 1.00222 1.23118 0.94917 0.93743 0.97536 1.62014 1.08621 1.01672 1.53491 1.22452 0.92036 1.01289 0.90882 1.20999 0.97228 0.95259 0.94637 1.22360 0.96304 0.98649 1.02835 1.22579 0.99947 0.95901 1.02354 1.19604 0.93416 0.95944 0.94987 1.21131 1.01900 1.40546 0.91156 0.90554 1.25022 0.98241 0.95161 0.95150 1.69916 1.36127 1.48042 1.00364 0.86835 0.84970 0.79457 0.78336 1.20489 1.21549 1.19059 1.22697 0.95279 0.93110 0.98532 1.20909 0.96843 0.94362 0.99953 0.88736 0.88799 0.91441 0.90742 0.91385 0.89807 0.91220 0.91650 0.93421 0.90884 0.93718 0.93854 0.90834 0.92882 0.96627 0.97308 0.92870 0.91220 0.91564 0.90725 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.32 14.01 29.01 0.41 -1.91 16 2 C -0.11 -1.31 5.41 -100.34 -0.54 -1.85 16 3 C -0.09 -1.07 6.21 -27.37 -0.17 -1.24 16 4 C 0.03 0.47 3.47 -3.71 -0.01 0.46 16 5 N -0.53 -7.80 4.77 -234.36 -1.12 -8.92 16 6 C 0.06 1.00 4.87 -3.82 -0.02 0.98 16 7 C -0.08 -1.50 0.52 -154.51 -0.08 -1.58 16 8 C -0.15 -2.66 6.44 37.16 0.24 -2.42 16 9 C -0.15 -2.73 7.08 37.15 0.26 -2.47 16 10 C 0.00 -0.04 3.08 -27.88 -0.09 -0.12 16 11 C -0.51 -13.90 7.59 -34.44 -0.26 -14.16 16 12 H 0.08 2.23 6.42 -52.49 -0.34 1.90 16 13 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 14 N -0.91 -27.60 13.96 55.43 0.77 -26.82 16 15 Si 0.88 21.65 27.47 -169.99 -4.67 16.99 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 19 C 0.03 0.43 4.60 -3.71 -0.02 0.41 16 20 C -0.08 -0.98 6.21 -27.36 -0.17 -1.15 16 21 H 0.09 0.95 7.95 -52.48 -0.42 0.53 16 22 H 0.09 0.93 7.95 -52.49 -0.42 0.52 16 23 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.03 3.02 -51.93 -0.16 0.88 16 26 H 0.08 1.17 5.79 -51.93 -0.30 0.87 16 27 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 28 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 29 H 0.05 0.79 3.97 -51.93 -0.21 0.58 16 30 H 0.07 1.55 6.33 -51.93 -0.33 1.22 16 31 H 0.04 0.78 6.96 -51.93 -0.36 0.42 16 32 H 0.04 0.71 6.26 -51.92 -0.33 0.39 16 33 H 0.07 1.56 6.34 -51.93 -0.33 1.23 16 34 H 0.05 0.87 5.01 -51.93 -0.26 0.61 16 35 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 39 H 0.07 0.96 3.90 -51.93 -0.20 0.76 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -28.82 290.41 -7.64 -36.47 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.46 Total: 1.21 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -0.55 Total: -23.29 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.34 Total: -35.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.82 -7.64 -36.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353331091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.941 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds