Wall clock time and date at job start Sun Mar 29 2020 22:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51432 * 121.11070 * 2 1 4 4 C 1.53303 * 108.23755 * 229.00138 * 3 2 1 5 5 N 1.46824 * 109.40126 * 306.20716 * 4 3 2 6 6 C 1.46901 * 111.00020 * 189.75551 * 5 4 3 7 7 C 1.53008 * 109.46906 * 317.16250 * 6 5 4 8 8 C 1.52996 * 109.47174 * 309.34808 * 7 6 5 9 9 C 1.52993 * 109.47004 * 69.35073 * 7 6 5 10 10 C 1.52999 * 109.46914 * 189.35061 * 7 6 5 11 11 C 1.50703 * 109.47227 * 180.02562 * 10 7 6 12 12 H 1.08001 * 119.99682 * 359.97438 * 11 10 7 13 13 C 1.37874 * 120.00196 * 180.02562 * 11 10 7 14 14 N 1.31515 * 119.99606 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00192 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46869 * 90.00304 * 15 13 11 17 17 H 1.48492 * 109.47470 * 210.00593 * 15 13 11 18 18 H 1.48504 * 109.47284 * 330.00661 * 15 13 11 19 19 C 1.46821 * 111.56616 * 65.39101 * 5 4 3 20 20 C 1.51438 * 121.10648 * 179.97438 * 2 1 3 21 21 H 1.08004 * 119.99729 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.00351 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.71377 * 348.68798 * 3 2 1 24 24 H 1.09000 * 109.71059 * 109.31775 * 3 2 1 25 25 H 1.09001 * 109.48270 * 66.18694 * 4 3 2 26 26 H 1.09002 * 109.48509 * 186.22942 * 4 3 2 27 27 H 1.08993 * 109.47610 * 77.16446 * 6 5 4 28 28 H 1.08998 * 109.47397 * 197.16633 * 6 5 4 29 29 H 1.09003 * 109.47142 * 71.43603 * 8 7 6 30 30 H 1.08999 * 109.47181 * 191.43568 * 8 7 6 31 31 H 1.08996 * 109.47461 * 311.43479 * 8 7 6 32 32 H 1.09007 * 109.47318 * 26.08717 * 9 7 6 33 33 H 1.09003 * 109.47115 * 146.08639 * 9 7 6 34 34 H 1.08998 * 109.47204 * 266.08199 * 9 7 6 35 35 H 1.09001 * 109.46940 * 299.99799 * 10 7 6 36 36 H 1.08997 * 109.47233 * 59.99952 * 10 7 6 37 37 H 0.97004 * 119.99220 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.48776 * 174.63590 * 19 5 4 39 39 H 1.08998 * 109.48562 * 54.58796 * 19 5 4 40 40 H 1.08998 * 109.70483 * 250.68035 * 20 2 1 41 41 H 1.08997 * 109.70799 * 11.30738 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0925 1.2965 0.0000 4 6 3.1582 1.2137 -1.0989 5 7 3.9617 -0.0003 -0.9086 6 6 5.1332 -0.0006 -1.7949 7 6 4.7195 0.4807 -3.1872 8 6 3.4958 -0.3085 -3.6569 9 6 4.3747 1.9702 -3.1302 10 6 5.8744 0.2617 -4.1665 11 6 5.4672 0.7363 -5.5377 12 1 4.4830 1.1522 -5.6949 13 6 6.3508 0.6387 -6.5916 14 7 5.9951 1.0525 -7.7882 15 14 8.0528 -0.0813 -6.3198 16 1 8.0109 -1.5488 -6.5429 17 1 9.0097 0.5370 -7.2722 18 1 8.4910 0.1955 -4.9282 19 6 3.1582 -1.2145 -1.0983 20 6 2.0924 -1.2966 0.0006 21 1 -0.5400 0.9354 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.4210 2.1311 -0.2013 24 1 2.5731 1.4359 0.9684 25 1 2.6728 1.1793 -2.0742 26 1 3.8047 2.0897 -1.0451 27 1 5.8945 0.6667 -1.3912 28 1 5.5358 -1.0111 -1.8647 29 1 2.6218 0.0015 -3.0841 30 1 3.3235 -0.1154 -4.7158 31 1 3.6704 -1.3736 -3.5056 32 1 4.9142 2.4368 -2.3059 33 1 4.6620 2.4458 -4.0679 34 1 3.3022 2.0893 -2.9762 35 1 6.7461 0.8239 -3.8318 36 1 6.1200 -0.7995 -4.2071 37 1 6.6170 0.9841 -8.5296 38 1 3.8046 -2.0905 -1.0440 39 1 2.6727 -1.1805 -2.0736 40 1 2.5730 -1.4355 0.9690 41 1 1.4208 -2.1313 -0.2002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353331091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:34 Heat of formation + Delta-G solvation = 23.002721 kcal Electronic energy + Delta-G solvation = -18087.644221 eV Core-core repulsion = 15581.990919 eV Total energy + Delta-G solvation = -2505.653301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30369 -37.70645 -35.10830 -33.74929 -32.28312 -29.80869 -29.57142 -28.28550 -26.51075 -24.02460 -23.84449 -22.03919 -19.74156 -19.27409 -18.61900 -16.70492 -16.44410 -16.09562 -15.90562 -15.69153 -15.23746 -14.80458 -14.53682 -14.37932 -14.00101 -13.67144 -13.45632 -13.19650 -12.89787 -12.67221 -12.46869 -12.28104 -12.24278 -11.99012 -11.83300 -11.63761 -11.54112 -11.31586 -11.25060 -10.98874 -10.88387 -10.71576 -9.90727 -8.82193 -8.23676 -6.23754 1.34912 1.36992 1.42672 1.48022 2.38229 3.11609 3.13295 3.84797 3.89939 4.07359 4.08754 4.14229 4.34516 4.47968 4.49520 4.67984 4.69063 4.71961 4.75078 4.83298 4.91047 4.92756 5.00852 5.01973 5.06720 5.09929 5.11598 5.18791 5.29756 5.37992 5.40133 5.47242 5.61067 5.70850 5.79993 5.80049 6.00258 6.27537 6.31846 6.39592 6.82713 7.38573 8.92580 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.044255 B = 0.006058 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.543212 B = 4620.992130 C = 4740.466417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.084 4.084 4 C 0.034 3.966 5 N -0.530 5.530 6 C 0.069 3.931 7 C -0.078 4.078 8 C -0.135 4.135 9 C -0.144 4.144 10 C 0.000 4.000 11 C -0.503 4.503 12 H 0.041 0.959 13 C 0.001 3.999 14 N -0.955 5.955 15 Si 0.942 3.058 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.248 1.248 19 C 0.029 3.971 20 C -0.078 4.078 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 -3.080 17.548 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.130 4.130 3 C -0.121 4.121 4 C -0.093 4.093 5 N -0.253 5.253 6 C -0.059 4.059 7 C -0.079 4.079 8 C -0.191 4.191 9 C -0.200 4.200 10 C -0.038 4.038 11 C -0.541 4.541 12 H 0.060 0.940 13 C -0.195 4.195 14 N -0.597 5.597 15 Si 0.766 3.234 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.172 1.172 19 C -0.099 4.099 20 C -0.115 4.115 21 H 0.121 0.879 22 H 0.122 0.878 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.795 -3.069 17.887 19.379 hybrid contribution 0.553 -0.160 -1.608 1.708 sum -6.242 -3.229 16.280 17.732 Atomic orbital electron populations 1.23733 0.94770 1.02433 1.02978 1.22152 0.95272 0.96311 0.99268 1.20968 0.96680 0.94950 0.99520 1.23072 0.95255 0.93410 0.97592 1.62074 1.08517 1.02402 1.52307 1.22318 0.93003 1.01392 0.89157 1.20983 0.95733 0.95858 0.95369 1.22278 0.97159 0.99137 1.00527 1.22533 1.01321 0.95316 1.00866 1.19568 0.95040 0.95547 0.93618 1.21410 1.00351 1.39067 0.93313 0.94044 1.25929 1.02695 0.96022 0.94851 1.70071 1.37785 1.50323 1.01487 0.85784 0.79771 0.78790 0.79033 1.19666 1.21500 1.17153 1.22738 0.95677 0.92745 0.98728 1.20872 0.96447 0.94888 0.99298 0.87928 0.87774 0.90355 0.90402 0.92897 0.89852 0.90770 0.91321 0.91400 0.94732 0.92968 0.91954 0.94791 0.91252 0.96658 0.97107 0.92908 0.90757 0.92743 0.90419 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.81 14.01 67.78 0.95 -2.86 16 2 C -0.13 -2.75 5.41 -16.02 -0.09 -2.84 16 3 C -0.08 -1.80 6.21 30.18 0.19 -1.61 16 4 C 0.03 0.86 3.47 86.42 0.30 1.16 16 5 N -0.53 -14.16 4.77 -895.39 -4.27 -18.43 16 6 C 0.07 2.12 4.87 86.31 0.42 2.54 16 7 C -0.08 -2.87 0.52 -52.18 -0.03 -2.89 16 8 C -0.13 -4.90 6.44 71.98 0.46 -4.44 16 9 C -0.14 -5.15 7.08 71.98 0.51 -4.64 16 10 C 0.00 0.01 3.08 29.85 0.09 0.10 16 11 C -0.50 -28.20 7.59 25.60 0.19 -28.01 16 12 H 0.04 2.56 6.42 -2.91 -0.02 2.54 16 13 C 0.00 0.04 5.47 84.65 0.46 0.51 16 14 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 15 Si 0.94 44.69 27.47 68.60 1.88 46.58 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 18 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 19 C 0.03 0.71 4.60 86.42 0.40 1.10 16 20 C -0.08 -1.61 6.21 30.18 0.19 -1.42 16 21 H 0.10 1.75 7.95 -2.91 -0.02 1.73 16 22 H 0.10 1.73 7.95 -2.91 -0.02 1.71 16 23 H 0.08 1.50 7.93 -2.39 -0.02 1.48 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.51 3.02 -2.39 -0.01 1.51 16 26 H 0.08 2.13 5.79 -2.39 -0.01 2.11 16 27 H 0.07 2.22 7.89 -2.39 -0.02 2.20 16 28 H 0.07 2.06 7.68 -2.39 -0.02 2.04 16 29 H 0.07 2.19 3.97 -2.39 -0.01 2.18 16 30 H 0.03 1.50 6.33 -2.39 -0.02 1.49 16 31 H 0.05 1.79 6.96 -2.39 -0.02 1.77 16 32 H 0.06 1.96 6.26 -2.38 -0.01 1.95 16 33 H 0.03 1.47 6.34 -2.39 -0.02 1.45 16 34 H 0.07 2.24 5.01 -2.39 -0.01 2.23 16 35 H 0.02 0.70 7.20 -2.39 -0.02 0.68 16 36 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 37 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 38 H 0.07 1.76 7.82 -2.39 -0.02 1.74 16 39 H 0.05 1.48 3.90 -2.39 -0.01 1.47 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.44 7.93 -2.39 -0.02 1.42 16 Total: -1.00 -62.75 290.41 2.91 -59.84 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.95 Total: 15.12 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 4.05 Total: -43.30 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -3.97 Total: -78.25 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -62.75 2.91 -59.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353331091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.847 kcal (2) G-P(sol) polarization free energy of solvation -62.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds