Wall clock time and date at job start Sun Mar 29 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.29825 * 118.55610 * 2 1 4 4 C 1.50141 * 123.28858 * 180.11570 * 3 2 1 5 5 N 1.46847 * 110.27320 * 343.20472 * 4 3 2 6 6 C 1.46897 * 110.99977 * 287.54149 * 5 4 3 7 7 C 1.53005 * 109.46999 * 273.73805 * 6 5 4 8 8 C 1.53008 * 109.46649 * 65.37736 * 7 6 5 9 9 C 1.52998 * 109.47074 * 185.37028 * 7 6 5 10 10 C 1.52993 * 109.47393 * 305.37736 * 7 6 5 11 11 C 1.50705 * 109.47207 * 180.02562 * 10 7 6 12 12 H 1.07998 * 119.99592 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00206 * 179.97438 * 11 10 7 14 14 N 1.31520 * 119.99716 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46976 * 59.99543 * 15 13 11 17 17 H 1.48503 * 109.47257 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47112 * 300.00004 * 15 13 11 19 19 C 1.47244 * 110.20288 * 50.92824 * 5 4 3 20 20 C 1.50305 * 118.55305 * 180.23358 * 2 1 3 21 21 H 1.08995 * 109.47440 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47321 * 120.00190 * 1 2 3 23 23 H 1.08998 * 109.47088 * 239.99607 * 1 2 3 24 24 H 1.08000 * 118.35465 * 0.39213 * 3 2 1 25 25 H 1.08997 * 109.33949 * 103.45622 * 4 3 2 26 26 H 1.09002 * 109.33720 * 222.96579 * 4 3 2 27 27 H 1.08998 * 109.47650 * 33.74543 * 6 5 4 28 28 H 1.08997 * 109.47095 * 153.74879 * 6 5 4 29 29 H 1.08991 * 109.47577 * 50.05066 * 8 7 6 30 30 H 1.09002 * 109.46734 * 170.05383 * 8 7 6 31 31 H 1.09005 * 109.46618 * 290.05071 * 8 7 6 32 32 H 1.08993 * 109.47085 * 56.89678 * 9 7 6 33 33 H 1.09003 * 109.46765 * 176.89416 * 9 7 6 34 34 H 1.08996 * 109.47467 * 296.89500 * 9 7 6 35 35 H 1.09003 * 109.46991 * 299.99304 * 10 7 6 36 36 H 1.08993 * 109.47375 * 59.99720 * 10 7 6 37 37 H 0.97003 * 119.99794 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.63669 * 50.88951 * 19 5 4 39 39 H 1.08999 * 109.63270 * 171.50007 * 19 5 4 40 40 H 1.09001 * 109.55834 * 43.51710 * 20 2 1 41 41 H 1.08994 * 109.25520 * 283.69346 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1275 1.1403 0.0000 4 6 3.6238 1.2642 -0.0025 5 7 4.2404 -0.0085 0.3932 6 6 4.0575 -0.2580 1.8292 7 6 5.1829 0.4212 2.6123 8 6 5.0691 1.9390 2.4557 9 6 5.0694 0.0513 4.0925 10 6 6.5353 -0.0474 2.0716 11 6 7.6437 0.6212 2.8434 12 1 7.4072 1.3115 3.6395 13 6 8.9597 0.3515 2.5331 14 7 9.2477 -0.4896 1.5638 15 14 10.3337 1.1806 3.4892 16 1 10.2231 0.8221 4.9260 17 1 11.6463 0.7248 2.9653 18 1 10.2238 2.6536 3.3367 19 6 3.6875 -1.1125 -0.4089 20 6 2.2254 -1.3202 -0.0054 21 1 -0.3634 1.0276 0.0005 22 1 -0.3634 -0.5139 -0.8900 23 1 -0.3633 -0.5139 0.8899 24 1 1.5379 2.0452 0.0065 25 1 3.9620 1.5334 -1.0031 26 1 3.9227 2.0434 0.6987 27 1 3.0970 0.1462 2.1489 28 1 4.0806 -1.3314 2.0173 29 1 4.0479 2.2512 2.6737 30 1 5.7543 2.4280 3.1482 31 1 5.3243 2.2189 1.4336 32 1 5.0950 -1.0331 4.1991 33 1 5.9027 0.4901 4.6415 34 1 4.1299 0.4335 4.4916 35 1 6.6163 -1.1286 2.1832 36 1 6.6161 0.2162 1.0171 37 1 10.1736 -0.6790 1.3453 38 1 3.7429 -0.8596 -1.4677 39 1 4.2535 -2.0240 -0.2169 40 1 1.7455 -1.9939 -0.7154 41 1 2.1832 -1.7564 0.9926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353854566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:09 Heat of formation + Delta-G solvation = 6.018985 kcal Electronic energy + Delta-G solvation = -17931.643120 eV Core-core repulsion = 15425.253349 eV Total energy + Delta-G solvation = -2506.389771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66321 -36.33026 -33.41528 -32.09442 -30.75146 -27.95949 -26.96297 -26.46591 -25.42989 -23.19430 -22.82326 -21.41585 -18.20161 -16.82735 -16.19504 -15.47777 -15.14193 -14.47181 -14.32946 -14.03829 -13.56135 -13.15430 -12.94957 -12.71842 -12.51754 -12.32385 -11.89426 -11.76635 -11.52212 -11.32582 -11.26024 -10.88865 -10.84653 -10.66035 -10.41876 -10.27565 -10.17225 -9.95942 -9.50219 -8.89886 -8.67161 -8.57170 -8.16925 -7.64739 -5.81594 -3.80863 2.29238 3.41462 3.46138 3.48218 4.40829 4.59221 4.83203 5.01474 5.25955 5.32528 5.52857 5.53320 5.56492 5.58872 5.74485 5.79577 5.84272 5.86644 5.97978 6.06409 6.11596 6.14224 6.23493 6.27113 6.36839 6.48282 6.58075 6.71299 6.81009 6.83813 7.04754 7.17512 7.29545 7.44876 7.58834 7.72135 7.93548 8.15280 8.32440 8.66092 9.26766 9.80389 11.29554 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.006079 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.608182 B = 4604.729963 C = 4777.630636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.135 4.135 3 C -0.183 4.183 4 C 0.061 3.939 5 N -0.510 5.510 6 C 0.069 3.931 7 C -0.057 4.057 8 C -0.127 4.127 9 C -0.129 4.129 10 C 0.046 3.954 11 C -0.508 4.508 12 H 0.053 0.947 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.882 3.118 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.279 1.279 19 C 0.053 3.947 20 C -0.119 4.119 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.006 0.994 36 H 0.035 0.965 37 H 0.257 0.743 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.287 0.808 -2.822 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.135 4.135 3 C -0.203 4.203 4 C -0.066 4.066 5 N -0.230 5.230 6 C -0.059 4.059 7 C -0.057 4.057 8 C -0.183 4.183 9 C -0.187 4.187 10 C 0.008 3.992 11 C -0.547 4.547 12 H 0.071 0.929 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.711 3.289 16 H -0.206 1.206 17 H -0.216 1.216 18 H -0.205 1.205 19 C -0.075 4.075 20 C -0.157 4.157 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.024 0.976 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.604 0.755 -3.005 14.929 hybrid contribution -0.164 0.356 0.667 0.774 sum -14.767 1.110 -2.338 14.993 Atomic orbital electron populations 1.20879 0.92882 1.01853 1.01578 1.20919 0.95380 0.95136 1.02088 1.22913 0.98604 0.97152 1.01640 1.21590 0.88238 0.94391 1.02411 1.62577 1.54718 1.01194 1.04536 1.22263 0.96975 0.99710 0.86967 1.20600 0.97448 0.94347 0.93338 1.21905 0.98064 0.96550 1.01825 1.21765 0.99770 1.00314 0.96801 1.19004 0.87730 0.95343 0.97073 1.21336 0.91040 1.25182 1.17108 0.92878 1.24977 0.98640 0.95511 0.95327 1.69975 1.18279 1.35361 1.29982 0.86827 0.81871 0.79909 0.80335 1.20552 1.21550 1.20491 1.22293 0.91475 0.95664 0.98098 1.21059 0.97618 0.94954 1.02112 0.92438 0.92101 0.92133 0.88136 0.90261 0.87835 0.95371 0.92252 0.95711 0.92689 0.92195 0.93922 0.91544 0.95457 0.97571 0.94649 0.93355 0.91056 0.90239 0.91219 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.02 36.00 0.36 -0.82 16 2 C -0.13 -1.71 5.41 -100.93 -0.55 -2.26 16 3 C -0.18 -2.45 8.78 -35.97 -0.32 -2.77 16 4 C 0.06 0.94 5.42 -5.28 -0.03 0.91 16 5 N -0.51 -8.80 3.87 -236.11 -0.91 -9.71 16 6 C 0.07 1.22 2.89 -3.82 -0.01 1.21 16 7 C -0.06 -1.16 0.61 -154.51 -0.09 -1.25 16 8 C -0.13 -2.42 6.47 37.16 0.24 -2.18 16 9 C -0.13 -2.49 8.26 37.16 0.31 -2.19 16 10 C 0.05 1.17 3.81 -27.88 -0.11 1.06 16 11 C -0.51 -14.15 7.71 -34.44 -0.27 -14.41 16 12 H 0.05 1.44 5.73 -52.49 -0.30 1.14 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 15 Si 0.88 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.05 0.79 5.87 -3.59 -0.02 0.77 16 20 C -0.12 -1.51 5.35 -28.03 -0.15 -1.66 16 21 H 0.06 0.55 7.62 -51.93 -0.40 0.15 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.10 1.20 7.63 -52.49 -0.40 0.80 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.10 1.63 4.08 -51.93 -0.21 1.42 16 27 H 0.03 0.48 6.75 -51.93 -0.35 0.13 16 28 H 0.06 1.07 7.43 -51.93 -0.39 0.68 16 29 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 30 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 31 H 0.06 1.17 6.14 -51.93 -0.32 0.85 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.38 6.52 -51.93 -0.34 1.04 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.04 0.99 7.46 -51.93 -0.39 0.60 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.95 7.21 -51.93 -0.37 0.57 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -29.80 306.88 -8.47 -38.26 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.17 Total: -1.47 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.73 Total: -22.08 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.18 Total: -36.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.80 -8.47 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353854566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.283 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds