Wall clock time and date at job start Sun Mar 29 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.29825 * 118.55610 * 2 1 4 4 C 1.50141 * 123.28858 * 180.11570 * 3 2 1 5 5 N 1.46847 * 110.27320 * 343.20472 * 4 3 2 6 6 C 1.46897 * 110.99977 * 287.54149 * 5 4 3 7 7 C 1.53005 * 109.46999 * 273.73805 * 6 5 4 8 8 C 1.53008 * 109.46649 * 65.37736 * 7 6 5 9 9 C 1.52998 * 109.47074 * 185.37028 * 7 6 5 10 10 C 1.52993 * 109.47393 * 305.37736 * 7 6 5 11 11 C 1.50705 * 109.47207 * 180.02562 * 10 7 6 12 12 H 1.07998 * 119.99592 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00206 * 179.97438 * 11 10 7 14 14 N 1.31520 * 119.99716 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46976 * 59.99543 * 15 13 11 17 17 H 1.48503 * 109.47257 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47112 * 300.00004 * 15 13 11 19 19 C 1.47244 * 110.20288 * 50.92824 * 5 4 3 20 20 C 1.50305 * 118.55305 * 180.23358 * 2 1 3 21 21 H 1.08995 * 109.47440 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47321 * 120.00190 * 1 2 3 23 23 H 1.08998 * 109.47088 * 239.99607 * 1 2 3 24 24 H 1.08000 * 118.35465 * 0.39213 * 3 2 1 25 25 H 1.08997 * 109.33949 * 103.45622 * 4 3 2 26 26 H 1.09002 * 109.33720 * 222.96579 * 4 3 2 27 27 H 1.08998 * 109.47650 * 33.74543 * 6 5 4 28 28 H 1.08997 * 109.47095 * 153.74879 * 6 5 4 29 29 H 1.08991 * 109.47577 * 50.05066 * 8 7 6 30 30 H 1.09002 * 109.46734 * 170.05383 * 8 7 6 31 31 H 1.09005 * 109.46618 * 290.05071 * 8 7 6 32 32 H 1.08993 * 109.47085 * 56.89678 * 9 7 6 33 33 H 1.09003 * 109.46765 * 176.89416 * 9 7 6 34 34 H 1.08996 * 109.47467 * 296.89500 * 9 7 6 35 35 H 1.09003 * 109.46991 * 299.99304 * 10 7 6 36 36 H 1.08993 * 109.47375 * 59.99720 * 10 7 6 37 37 H 0.97003 * 119.99794 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.63669 * 50.88951 * 19 5 4 39 39 H 1.08999 * 109.63270 * 171.50007 * 19 5 4 40 40 H 1.09001 * 109.55834 * 43.51710 * 20 2 1 41 41 H 1.08994 * 109.25520 * 283.69346 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1275 1.1403 0.0000 4 6 3.6238 1.2642 -0.0025 5 7 4.2404 -0.0085 0.3932 6 6 4.0575 -0.2580 1.8292 7 6 5.1829 0.4212 2.6123 8 6 5.0691 1.9390 2.4557 9 6 5.0694 0.0513 4.0925 10 6 6.5353 -0.0474 2.0716 11 6 7.6437 0.6212 2.8434 12 1 7.4072 1.3115 3.6395 13 6 8.9597 0.3515 2.5331 14 7 9.2477 -0.4896 1.5638 15 14 10.3337 1.1806 3.4892 16 1 10.2231 0.8221 4.9260 17 1 11.6463 0.7248 2.9653 18 1 10.2238 2.6536 3.3367 19 6 3.6875 -1.1125 -0.4089 20 6 2.2254 -1.3202 -0.0054 21 1 -0.3634 1.0276 0.0005 22 1 -0.3634 -0.5139 -0.8900 23 1 -0.3633 -0.5139 0.8899 24 1 1.5379 2.0452 0.0065 25 1 3.9620 1.5334 -1.0031 26 1 3.9227 2.0434 0.6987 27 1 3.0970 0.1462 2.1489 28 1 4.0806 -1.3314 2.0173 29 1 4.0479 2.2512 2.6737 30 1 5.7543 2.4280 3.1482 31 1 5.3243 2.2189 1.4336 32 1 5.0950 -1.0331 4.1991 33 1 5.9027 0.4901 4.6415 34 1 4.1299 0.4335 4.4916 35 1 6.6163 -1.1286 2.1832 36 1 6.6161 0.2162 1.0171 37 1 10.1736 -0.6790 1.3453 38 1 3.7429 -0.8596 -1.4677 39 1 4.2535 -2.0240 -0.2169 40 1 1.7455 -1.9939 -0.7154 41 1 2.1832 -1.7564 0.9926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353854566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:09 Heat of formation + Delta-G solvation = -10.618087 kcal Electronic energy + Delta-G solvation = -17932.364558 eV Core-core repulsion = 15425.253349 eV Total energy + Delta-G solvation = -2507.111209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90789 -37.86681 -34.82358 -34.00391 -31.88450 -29.32061 -28.81199 -27.97112 -26.68363 -24.88624 -24.29472 -22.65859 -19.76031 -18.26173 -18.07976 -16.78088 -16.59962 -16.20832 -15.44737 -15.26684 -14.86685 -14.73833 -14.38587 -14.13697 -13.89490 -13.69055 -13.43109 -12.98180 -12.76904 -12.70266 -12.69298 -12.63847 -12.43543 -12.19017 -12.12372 -12.07150 -11.72901 -11.45856 -11.17494 -10.72194 -10.65217 -10.39370 -9.60508 -8.93429 -8.04245 -6.10594 1.30423 1.42408 1.44613 1.51672 2.49004 3.17467 3.28757 3.84243 3.98796 4.13314 4.20456 4.28488 4.35453 4.47098 4.59413 4.67792 4.70083 4.76399 4.82641 4.85499 4.88356 4.96071 4.97804 4.99425 5.04674 5.07115 5.16667 5.21167 5.24340 5.56404 5.60960 5.66173 5.71611 5.78917 6.01964 6.06123 6.15311 6.33021 6.41471 6.48948 7.07849 7.55422 9.07237 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.006079 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.608182 B = 4604.729963 C = 4777.630636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.062 3.938 5 N -0.539 5.539 6 C 0.082 3.918 7 C -0.057 4.057 8 C -0.118 4.118 9 C -0.125 4.125 10 C 0.060 3.940 11 C -0.516 4.516 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.950 3.050 16 H -0.270 1.270 17 H -0.289 1.289 18 H -0.269 1.269 19 C 0.052 3.948 20 C -0.114 4.114 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.117 0.883 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.059 0.941 35 H -0.031 1.031 36 H 0.004 0.996 37 H 0.257 0.743 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 1.707 -2.101 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.133 4.133 3 C -0.214 4.214 4 C -0.065 4.065 5 N -0.261 5.261 6 C -0.046 4.046 7 C -0.058 4.058 8 C -0.174 4.174 9 C -0.182 4.182 10 C 0.023 3.977 11 C -0.554 4.554 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.578 5.578 15 Si 0.776 3.224 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.195 1.195 19 C -0.077 4.077 20 C -0.152 4.152 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.135 0.865 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.078 0.922 35 H -0.012 1.012 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.466 1.664 -2.278 16.706 hybrid contribution 0.410 0.035 0.391 0.568 sum -16.055 1.698 -1.887 16.255 Atomic orbital electron populations 1.20888 0.90735 1.02787 1.02484 1.21175 0.96912 0.94525 1.00693 1.22853 0.97239 0.98257 1.03097 1.21512 0.89889 0.93119 1.01980 1.62481 1.56450 1.02748 1.04407 1.22023 0.96331 0.98898 0.87298 1.20535 0.95364 0.95531 0.94327 1.21801 0.99551 0.95204 1.00891 1.21694 1.00702 1.00119 0.95709 1.18772 0.90792 0.92821 0.95343 1.21738 0.91800 1.24831 1.17025 0.92181 1.25858 1.01507 0.96245 0.96354 1.70131 1.18721 1.37105 1.31836 0.85731 0.78424 0.79126 0.79123 1.19506 1.21488 1.19451 1.22280 0.92988 0.94416 0.97976 1.21001 0.95995 0.95772 1.02451 0.91564 0.90879 0.91432 0.86470 0.90606 0.88522 0.93713 0.93013 0.92591 0.94109 0.93148 0.94276 0.93388 0.92173 1.01249 0.97725 0.93469 0.90689 0.91568 0.89193 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.02 71.23 0.71 -1.18 16 2 C -0.13 -3.01 5.41 -15.40 -0.08 -3.09 16 3 C -0.19 -4.77 8.78 26.68 0.23 -4.53 16 4 C 0.06 1.86 5.42 85.39 0.46 2.32 16 5 N -0.54 -18.67 3.87 -900.92 -3.49 -22.16 16 6 C 0.08 2.88 2.89 86.31 0.25 3.13 16 7 C -0.06 -2.31 0.61 -52.18 -0.03 -2.34 16 8 C -0.12 -4.39 6.47 71.98 0.47 -3.92 16 9 C -0.12 -4.69 8.26 71.98 0.59 -4.10 16 10 C 0.06 3.18 3.81 29.85 0.11 3.29 16 11 C -0.52 -29.20 7.71 25.60 0.20 -29.00 16 12 H 0.06 3.26 5.73 -2.91 -0.02 3.24 16 13 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 14 N -0.94 -58.68 13.29 21.45 0.28 -58.40 16 15 Si 0.95 45.42 29.54 68.60 2.03 47.44 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.05 1.52 5.87 86.27 0.51 2.03 16 20 C -0.11 -2.68 5.35 29.75 0.16 -2.52 16 21 H 0.07 1.02 7.62 -2.39 -0.02 1.00 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.12 2.46 7.63 -2.91 -0.02 2.44 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.10 2.96 4.08 -2.39 -0.01 2.95 16 27 H 0.04 1.42 6.75 -2.39 -0.02 1.40 16 28 H 0.05 1.86 7.43 -2.39 -0.02 1.84 16 29 H 0.06 1.73 7.75 -2.39 -0.02 1.71 16 30 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 31 H 0.05 1.96 6.14 -2.38 -0.01 1.95 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.96 6.52 -2.39 -0.02 1.94 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 36 H 0.00 0.26 7.46 -2.39 -0.02 0.24 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.70 7.21 -2.39 -0.02 1.68 16 Total: -1.00 -64.81 306.88 3.84 -60.97 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.97 Total: 11.80 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 4.04 Total: -39.66 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -3.21 Total: -80.56 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -64.81 3.84 -60.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353854566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.349 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds