Wall clock time and date at job start Sun Mar 29 2020 21:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46941 * 300.00177 * 3 2 1 6 6 H 1.48502 * 109.47243 * 59.99817 * 3 2 1 7 7 C 1.37874 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47180 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47224 * 185.18991 * 10 9 7 12 12 C 1.46905 * 111.00049 * 160.47242 * 11 10 9 13 13 C 1.53000 * 109.46693 * 289.79114 * 12 11 10 14 14 C 1.53004 * 117.50016 * 244.95193 * 13 12 11 15 15 C 1.53006 * 117.49856 * 176.28924 * 13 12 11 16 16 C 1.46901 * 111.00093 * 284.42059 * 11 10 9 17 17 C 1.53001 * 109.47082 * 169.99826 * 16 11 10 18 18 C 1.53781 * 113.61386 * 185.00328 * 17 16 11 19 19 C 1.53783 * 87.17490 * 220.06483 * 18 17 16 20 20 C 1.53786 * 87.07833 * 25.38760 * 19 18 17 21 21 H 0.97003 * 119.99889 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47059 * 60.00334 * 9 7 2 23 23 H 1.08995 * 109.47417 * 300.00029 * 9 7 2 24 24 H 1.09002 * 109.47378 * 65.18672 * 10 9 7 25 25 H 1.09004 * 109.47469 * 305.19377 * 10 9 7 26 26 H 1.09002 * 109.47436 * 49.78914 * 12 11 10 27 27 H 1.08998 * 109.47247 * 169.79232 * 12 11 10 28 28 H 1.09001 * 115.55277 * 30.62379 * 13 12 11 29 29 H 1.09000 * 117.49535 * 359.97438 * 14 13 12 30 30 H 1.08995 * 117.50080 * 145.02479 * 14 13 12 31 31 H 1.08995 * 117.50125 * 214.97458 * 15 13 12 32 32 H 1.08997 * 117.49611 * 0.02562 * 15 13 12 33 33 H 1.09000 * 109.46690 * 49.99834 * 16 11 10 34 34 H 1.09001 * 109.47450 * 290.00234 * 16 11 10 35 35 H 1.08998 * 112.91156 * 316.25698 * 17 16 11 36 36 H 1.08996 * 113.61622 * 105.47250 * 18 17 16 37 37 H 1.08999 * 113.61334 * 334.65342 * 18 17 16 38 38 H 1.08997 * 113.61650 * 139.93583 * 19 18 17 39 39 H 1.09004 * 113.61098 * 270.84207 * 19 18 17 40 40 H 1.08998 * 113.61088 * 89.12257 * 20 19 18 41 41 H 1.09003 * 113.61505 * 219.93458 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5151 -4.9305 -0.1247 12 6 2.4030 -6.0056 -0.5872 13 6 2.7801 -5.7618 -2.0498 14 6 2.2947 -6.7798 -3.0837 15 6 3.7743 -6.7301 -2.6940 16 6 0.8667 -5.2921 1.1428 17 6 -0.0797 -6.4722 0.9131 18 6 -0.9025 -6.8529 2.1553 19 6 -0.6681 -8.3221 1.7664 20 6 0.6028 -7.8460 1.0433 21 1 -0.4850 0.8401 0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8092 -3.6580 0.9333 25 1 2.9316 -3.5534 -0.8393 26 1 3.3059 -6.0191 0.0233 27 1 1.8904 -6.9634 -0.4990 28 1 2.8256 -4.7165 -2.3557 29 1 1.7072 -7.6235 -2.7218 30 1 2.0213 -6.4045 -4.0698 31 1 4.4734 -6.3221 -3.4239 32 1 4.1593 -7.5411 -2.0759 33 1 0.3001 -4.4395 1.5172 34 1 1.6263 -5.5722 1.8726 35 1 -0.6784 -6.3661 0.0085 36 1 -1.9471 -6.5472 2.0976 37 1 -0.4299 -6.5694 3.0957 38 1 -0.4683 -8.9726 2.6178 39 1 -1.4281 -8.7227 1.0955 40 1 1.4882 -7.8338 1.6790 41 1 0.7742 -8.3432 0.0885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361553505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:45 Heat of formation + Delta-G solvation = 33.074806 kcal Electronic energy + Delta-G solvation = -17205.338831 eV Core-core repulsion = 14700.122288 eV Total energy + Delta-G solvation = -2505.216543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.25047 -37.49065 -35.56435 -32.92953 -29.85630 -28.33752 -25.95186 -25.33038 -23.71010 -22.20980 -21.68880 -20.59535 -19.50240 -19.05345 -16.48384 -15.92071 -15.33493 -15.00764 -14.68235 -14.40098 -13.82217 -13.43166 -13.00694 -12.75919 -12.41970 -12.35292 -11.95078 -11.82002 -11.39705 -11.25291 -11.16406 -10.96029 -10.83196 -10.52820 -10.42074 -10.17583 -10.01048 -9.85455 -9.84836 -9.51934 -9.30050 -9.02871 -8.29032 -7.60804 -5.95444 -3.97487 3.33285 3.40652 3.44673 3.98131 4.40003 4.53529 4.75115 4.81367 4.84672 4.99103 5.06497 5.16028 5.33307 5.40490 5.62764 5.72949 5.74990 5.76117 5.80473 5.81941 5.85985 5.92180 5.98019 6.04189 6.05999 6.13510 6.25450 6.26084 6.32713 6.50289 6.56321 6.63679 6.70600 7.08309 7.60347 7.66546 7.87111 7.99656 8.16477 8.49169 9.10535 9.65958 11.15939 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.006227 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.335861 B = 4495.317806 C = 5602.135169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.060 3.940 11 N -0.533 5.533 12 C 0.078 3.922 13 C -0.138 4.138 14 C -0.176 4.176 15 C -0.189 4.189 16 C 0.066 3.934 17 C -0.101 4.101 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.140 4.140 21 H 0.259 0.741 22 H 0.025 0.975 23 H 0.014 0.986 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -16.205 0.226 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.066 4.066 11 N -0.256 5.256 12 C -0.050 4.050 13 C -0.156 4.156 14 C -0.213 4.213 15 C -0.226 4.226 16 C -0.062 4.062 17 C -0.120 4.120 18 C -0.175 4.175 19 C -0.180 4.180 20 C -0.178 4.178 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.495 -16.016 -0.120 16.087 hybrid contribution 1.113 0.908 0.572 1.546 sum 2.608 -15.108 0.452 15.338 Atomic orbital electron populations 1.69987 1.05998 1.26346 1.50916 1.24985 0.94800 0.99096 0.95417 0.86575 0.80109 0.83984 0.77550 1.19807 1.21018 1.21075 1.21256 0.92968 0.91164 1.50501 0.92858 1.19051 0.93941 0.89995 0.97687 1.22387 0.96899 0.88808 0.98521 1.62073 1.31853 1.02908 1.28811 1.21812 0.94739 0.95794 0.92681 1.22363 1.02225 0.96975 0.94061 1.22933 0.96367 1.01909 1.00094 1.22947 0.92749 1.02850 1.04065 1.22091 0.96041 0.97805 0.90227 1.22599 0.97253 0.93369 0.98758 1.22908 1.00425 0.95791 0.98369 1.22802 0.98322 0.96676 1.00164 1.23110 0.97098 0.97445 1.00106 0.93126 0.95670 0.96796 0.96421 0.92001 0.95573 0.90409 0.87045 0.89263 0.89186 0.89146 0.89362 0.89838 0.95761 0.88436 0.91506 0.90351 0.91983 0.90451 0.90649 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.81 5.00 -27.88 -0.14 0.67 16 10 C 0.06 1.30 4.73 -3.83 -0.02 1.29 16 11 N -0.53 -9.78 4.41 -234.62 -1.03 -10.82 16 12 C 0.08 1.20 5.00 -3.82 -0.02 1.18 16 13 C -0.14 -2.06 5.57 -90.61 -0.50 -2.56 16 14 C -0.18 -2.24 10.18 -26.69 -0.27 -2.51 16 15 C -0.19 -2.30 10.26 -26.69 -0.27 -2.57 16 16 C 0.07 1.11 4.70 -3.82 -0.02 1.09 16 17 C -0.10 -1.39 3.50 -89.72 -0.31 -1.71 16 18 C -0.14 -1.64 7.64 -25.92 -0.20 -1.84 16 19 C -0.14 -1.48 8.09 -25.91 -0.21 -1.69 16 20 C -0.14 -1.62 5.78 -25.83 -0.15 -1.77 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.01 0.39 6.95 -51.93 -0.36 0.02 16 24 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 25 H 0.06 1.33 6.31 -51.93 -0.33 1.00 16 26 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.08 1.08 4.25 -51.93 -0.22 0.86 16 28 H 0.11 1.91 6.73 -51.93 -0.35 1.56 16 29 H 0.09 1.05 8.03 -51.93 -0.42 0.64 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.59 6.71 -51.93 -0.35 1.24 16 34 H 0.02 0.39 7.83 -51.93 -0.41 -0.01 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 41 H 0.06 0.71 7.28 -51.93 -0.38 0.33 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -29.71 320.91 -10.41 -40.12 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.40 Total: -0.47 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.53 Total: -24.07 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.30 Total: -37.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.71 -10.41 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361553505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.192 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds