Wall clock time and date at job start Sun Mar 29 2020 21:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46941 * 300.00177 * 3 2 1 6 6 H 1.48502 * 109.47243 * 59.99817 * 3 2 1 7 7 C 1.37874 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47180 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47224 * 185.18991 * 10 9 7 12 12 C 1.46905 * 111.00049 * 160.47242 * 11 10 9 13 13 C 1.53000 * 109.46693 * 289.79114 * 12 11 10 14 14 C 1.53004 * 117.50016 * 244.95193 * 13 12 11 15 15 C 1.53006 * 117.49856 * 176.28924 * 13 12 11 16 16 C 1.46901 * 111.00093 * 284.42059 * 11 10 9 17 17 C 1.53001 * 109.47082 * 169.99826 * 16 11 10 18 18 C 1.53781 * 113.61386 * 185.00328 * 17 16 11 19 19 C 1.53783 * 87.17490 * 220.06483 * 18 17 16 20 20 C 1.53786 * 87.07833 * 25.38760 * 19 18 17 21 21 H 0.97003 * 119.99889 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47059 * 60.00334 * 9 7 2 23 23 H 1.08995 * 109.47417 * 300.00029 * 9 7 2 24 24 H 1.09002 * 109.47378 * 65.18672 * 10 9 7 25 25 H 1.09004 * 109.47469 * 305.19377 * 10 9 7 26 26 H 1.09002 * 109.47436 * 49.78914 * 12 11 10 27 27 H 1.08998 * 109.47247 * 169.79232 * 12 11 10 28 28 H 1.09001 * 115.55277 * 30.62379 * 13 12 11 29 29 H 1.09000 * 117.49535 * 359.97438 * 14 13 12 30 30 H 1.08995 * 117.50080 * 145.02479 * 14 13 12 31 31 H 1.08995 * 117.50125 * 214.97458 * 15 13 12 32 32 H 1.08997 * 117.49611 * 0.02562 * 15 13 12 33 33 H 1.09000 * 109.46690 * 49.99834 * 16 11 10 34 34 H 1.09001 * 109.47450 * 290.00234 * 16 11 10 35 35 H 1.08998 * 112.91156 * 316.25698 * 17 16 11 36 36 H 1.08996 * 113.61622 * 105.47250 * 18 17 16 37 37 H 1.08999 * 113.61334 * 334.65342 * 18 17 16 38 38 H 1.08997 * 113.61650 * 139.93583 * 19 18 17 39 39 H 1.09004 * 113.61098 * 270.84207 * 19 18 17 40 40 H 1.08998 * 113.61088 * 89.12257 * 20 19 18 41 41 H 1.09003 * 113.61505 * 219.93458 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5151 -4.9305 -0.1247 12 6 2.4030 -6.0056 -0.5872 13 6 2.7801 -5.7618 -2.0498 14 6 2.2947 -6.7798 -3.0837 15 6 3.7743 -6.7301 -2.6940 16 6 0.8667 -5.2921 1.1428 17 6 -0.0797 -6.4722 0.9131 18 6 -0.9025 -6.8529 2.1553 19 6 -0.6681 -8.3221 1.7664 20 6 0.6028 -7.8460 1.0433 21 1 -0.4850 0.8401 0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8092 -3.6580 0.9333 25 1 2.9316 -3.5534 -0.8393 26 1 3.3059 -6.0191 0.0233 27 1 1.8904 -6.9634 -0.4990 28 1 2.8256 -4.7165 -2.3557 29 1 1.7072 -7.6235 -2.7218 30 1 2.0213 -6.4045 -4.0698 31 1 4.4734 -6.3221 -3.4239 32 1 4.1593 -7.5411 -2.0759 33 1 0.3001 -4.4395 1.5172 34 1 1.6263 -5.5722 1.8726 35 1 -0.6784 -6.3661 0.0085 36 1 -1.9471 -6.5472 2.0976 37 1 -0.4299 -6.5694 3.0957 38 1 -0.4683 -8.9726 2.6178 39 1 -1.4281 -8.7227 1.0955 40 1 1.4882 -7.8338 1.6790 41 1 0.7742 -8.3432 0.0885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361553505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:44 Heat of formation + Delta-G solvation = 16.996605 kcal Electronic energy + Delta-G solvation = -17206.036034 eV Core-core repulsion = 14700.122288 eV Total energy + Delta-G solvation = -2505.913746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41256 -38.61046 -36.95893 -35.04715 -31.81109 -29.57117 -27.56722 -26.38643 -25.32327 -23.21477 -23.17646 -22.05771 -20.87214 -20.13425 -18.57831 -17.25478 -16.53563 -16.46184 -16.16609 -15.96869 -15.06391 -14.70470 -14.55726 -14.27714 -14.08495 -13.53675 -13.30200 -13.21707 -12.91000 -12.81646 -12.42668 -12.41628 -12.32068 -12.15212 -11.79244 -11.40830 -11.37460 -11.31887 -11.11869 -10.98788 -10.90065 -10.68171 -10.53868 -9.10062 -8.20225 -6.31846 1.38887 1.39545 1.52934 2.39564 2.85434 3.12845 3.19407 3.72019 3.79308 3.85763 3.96961 4.01413 4.09305 4.23753 4.39142 4.44119 4.54207 4.58352 4.68278 4.76856 4.81209 4.85138 4.86608 4.88050 4.95076 5.06161 5.07785 5.10854 5.13218 5.19166 5.31423 5.39305 5.42234 5.46151 5.63883 5.69468 5.79948 6.15124 6.36305 6.41722 6.85726 7.37314 8.92217 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.006227 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.335861 B = 4495.317806 C = 5602.135169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.079 3.921 11 N -0.545 5.545 12 C 0.085 3.915 13 C -0.170 4.170 14 C -0.169 4.169 15 C -0.166 4.166 16 C 0.069 3.931 17 C -0.108 4.108 18 C -0.139 4.139 19 C -0.128 4.128 20 C -0.132 4.132 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.013 1.013 24 H 0.016 0.984 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -17.775 0.178 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.004 3.996 10 C -0.049 4.049 11 N -0.269 5.269 12 C -0.043 4.043 13 C -0.189 4.189 14 C -0.206 4.206 15 C -0.204 4.204 16 C -0.059 4.059 17 C -0.126 4.126 18 C -0.177 4.177 19 C -0.166 4.166 20 C -0.169 4.169 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.006 0.994 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.739 -17.609 -0.168 17.822 hybrid contribution 0.681 1.391 0.572 1.651 sum 3.420 -16.218 0.404 16.580 Atomic orbital electron populations 1.70126 1.07860 1.27677 1.51548 1.25969 0.95740 1.03324 0.94611 0.85382 0.79028 0.78651 0.77864 1.18590 1.20259 1.20239 1.21660 0.93420 0.92369 1.50768 0.92368 1.18851 0.94091 0.91966 0.94650 1.21981 0.95478 0.89089 0.98303 1.61987 1.32370 1.02737 1.29808 1.21846 0.94297 0.95245 0.92874 1.22258 1.06020 0.96249 0.94368 1.23027 0.97223 1.01049 0.99296 1.23036 0.92469 1.01599 1.03252 1.22084 0.96341 0.97805 0.89689 1.22580 0.97363 0.93473 0.99229 1.22945 0.99981 0.97343 0.97452 1.22751 0.97677 0.95493 1.00646 1.23067 0.97684 0.95242 1.00928 0.92770 0.99110 0.99420 0.96621 0.92018 0.95444 0.88330 0.90139 0.87857 0.89038 0.88341 0.87513 0.93352 0.94969 0.89823 0.91673 0.90258 0.90276 0.89485 0.90207 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.35 5.00 29.85 0.15 2.50 16 10 C 0.08 3.55 4.73 86.30 0.41 3.96 16 11 N -0.55 -20.59 4.41 -896.21 -3.95 -24.54 16 12 C 0.08 2.53 5.00 86.30 0.43 2.97 16 13 C -0.17 -4.98 5.57 -10.79 -0.06 -5.04 16 14 C -0.17 -3.97 10.18 30.62 0.31 -3.66 16 15 C -0.17 -3.64 10.26 30.62 0.31 -3.32 16 16 C 0.07 2.37 4.70 86.30 0.41 2.77 16 17 C -0.11 -2.93 3.50 -10.21 -0.04 -2.97 16 18 C -0.14 -3.21 7.64 31.12 0.24 -2.97 16 19 C -0.13 -2.33 8.09 31.12 0.25 -2.08 16 20 C -0.13 -2.72 5.78 31.18 0.18 -2.54 16 21 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 23 H -0.01 -0.76 6.95 -2.39 -0.02 -0.77 16 24 H 0.02 0.70 8.00 -2.39 -0.02 0.68 16 25 H 0.06 2.75 6.31 -2.39 -0.02 2.73 16 26 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 27 H 0.10 2.52 4.25 -2.39 -0.01 2.51 16 28 H 0.08 2.86 6.73 -2.39 -0.02 2.84 16 29 H 0.10 2.13 8.03 -2.39 -0.02 2.11 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.97 6.71 -2.39 -0.02 1.96 16 34 H 0.03 1.04 7.83 -2.39 -0.02 1.02 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 1.61 7.90 -2.39 -0.02 1.59 16 41 H 0.07 1.40 7.28 -2.39 -0.02 1.39 16 Total: -1.00 -65.92 320.91 2.62 -63.30 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.97 Total: 13.79 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 3.29 Total: -41.75 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -3.66 Total: -82.67 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.92 2.62 -63.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361553505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.296 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds