Wall clock time and date at job start Sun Mar 29 2020 21:50:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86804 * 120.00066 * 2 1
4 4 H 1.48499 * 109.47276 * 179.97438 * 3 2 1
5 5 H 1.48503 * 109.46941 * 300.00177 * 3 2 1
6 6 H 1.48502 * 109.47243 * 59.99817 * 3 2 1
7 7 C 1.37874 * 120.00231 * 179.97438 * 2 1 3
8 8 H 1.08009 * 120.00121 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47180 * 179.97438 * 9 7 2
11 11 N 1.46897 * 109.47224 * 185.18991 * 10 9 7
12 12 C 1.46905 * 111.00049 * 160.47242 * 11 10 9
13 13 C 1.53000 * 109.46693 * 289.79114 * 12 11 10
14 14 C 1.53004 * 117.50016 * 244.95193 * 13 12 11
15 15 C 1.53006 * 117.49856 * 176.28924 * 13 12 11
16 16 C 1.46901 * 111.00093 * 284.42059 * 11 10 9
17 17 C 1.53001 * 109.47082 * 169.99826 * 16 11 10
18 18 C 1.53781 * 113.61386 * 185.00328 * 17 16 11
19 19 C 1.53783 * 87.17490 * 220.06483 * 18 17 16
20 20 C 1.53786 * 87.07833 * 25.38760 * 19 18 17
21 21 H 0.97003 * 119.99889 * 359.97438 * 1 2 3
22 22 H 1.09002 * 109.47059 * 60.00334 * 9 7 2
23 23 H 1.08995 * 109.47417 * 300.00029 * 9 7 2
24 24 H 1.09002 * 109.47378 * 65.18672 * 10 9 7
25 25 H 1.09004 * 109.47469 * 305.19377 * 10 9 7
26 26 H 1.09002 * 109.47436 * 49.78914 * 12 11 10
27 27 H 1.08998 * 109.47247 * 169.79232 * 12 11 10
28 28 H 1.09001 * 115.55277 * 30.62379 * 13 12 11
29 29 H 1.09000 * 117.49535 * 359.97438 * 14 13 12
30 30 H 1.08995 * 117.50080 * 145.02479 * 14 13 12
31 31 H 1.08995 * 117.50125 * 214.97458 * 15 13 12
32 32 H 1.08997 * 117.49611 * 0.02562 * 15 13 12
33 33 H 1.09000 * 109.46690 * 49.99834 * 16 11 10
34 34 H 1.09001 * 109.47450 * 290.00234 * 16 11 10
35 35 H 1.08998 * 112.91156 * 316.25698 * 17 16 11
36 36 H 1.08996 * 113.61622 * 105.47250 * 18 17 16
37 37 H 1.08999 * 113.61334 * 334.65342 * 18 17 16
38 38 H 1.08997 * 113.61650 * 139.93583 * 19 18 17
39 39 H 1.09004 * 113.61098 * 270.84207 * 19 18 17
40 40 H 1.08998 * 113.61088 * 89.12257 * 20 19 18
41 41 H 1.09003 * 113.61505 * 219.93458 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8903 2.3965 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0005
10 6 2.2453 -3.6620 0.0005
11 7 1.5151 -4.9305 -0.1247
12 6 2.4030 -6.0056 -0.5872
13 6 2.7801 -5.7618 -2.0498
14 6 2.2947 -6.7798 -3.0837
15 6 3.7743 -6.7301 -2.6940
16 6 0.8667 -5.2921 1.1428
17 6 -0.0797 -6.4722 0.9131
18 6 -0.9025 -6.8529 2.1553
19 6 -0.6681 -8.3221 1.7664
20 6 0.6028 -7.8460 1.0433
21 1 -0.4850 0.8401 0.0004
22 1 0.6248 -2.5570 -0.8897
23 1 0.6240 -2.5567 0.8902
24 1 2.8092 -3.6580 0.9333
25 1 2.9316 -3.5534 -0.8393
26 1 3.3059 -6.0191 0.0233
27 1 1.8904 -6.9634 -0.4990
28 1 2.8256 -4.7165 -2.3557
29 1 1.7072 -7.6235 -2.7218
30 1 2.0213 -6.4045 -4.0698
31 1 4.4734 -6.3221 -3.4239
32 1 4.1593 -7.5411 -2.0759
33 1 0.3001 -4.4395 1.5172
34 1 1.6263 -5.5722 1.8726
35 1 -0.6784 -6.3661 0.0085
36 1 -1.9471 -6.5472 2.0976
37 1 -0.4299 -6.5694 3.0957
38 1 -0.4683 -8.9726 2.6178
39 1 -1.4281 -8.7227 1.0955
40 1 1.4882 -7.8338 1.6790
41 1 0.7742 -8.3432 0.0885
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000361553505.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:50:44
Heat of formation + Delta-G solvation = 16.996605 kcal
Electronic energy + Delta-G solvation = -17206.036034 eV
Core-core repulsion = 14700.122288 eV
Total energy + Delta-G solvation = -2505.913746 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.41256 -38.61046 -36.95893 -35.04715 -31.81109 -29.57117 -27.56722 -26.38643
-25.32327 -23.21477 -23.17646 -22.05771 -20.87214 -20.13425 -18.57831 -17.25478
-16.53563 -16.46184 -16.16609 -15.96869 -15.06391 -14.70470 -14.55726 -14.27714
-14.08495 -13.53675 -13.30200 -13.21707 -12.91000 -12.81646 -12.42668 -12.41628
-12.32068 -12.15212 -11.79244 -11.40830 -11.37460 -11.31887 -11.11869 -10.98788
-10.90065 -10.68171 -10.53868 -9.10062 -8.20225 -6.31846 1.38887 1.39545
1.52934 2.39564 2.85434 3.12845 3.19407 3.72019 3.79308 3.85763
3.96961 4.01413 4.09305 4.23753 4.39142 4.44119 4.54207 4.58352
4.68278 4.76856 4.81209 4.85138 4.86608 4.88050 4.95076 5.06161
5.07785 5.10854 5.13218 5.19166 5.31423 5.39305 5.42234 5.46151
5.63883 5.69468 5.79948 6.15124 6.36305 6.41722 6.85726 7.37314
8.92217
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.019905 B = 0.006227 C = 0.004997
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1406.335861 B = 4495.317806 C = 5602.135169
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.001 3.999
3 Si 0.967 3.033
4 H -0.262 1.262
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.544 4.544
8 H 0.058 0.942
9 C 0.042 3.958
10 C 0.079 3.921
11 N -0.545 5.545
12 C 0.085 3.915
13 C -0.170 4.170
14 C -0.169 4.169
15 C -0.166 4.166
16 C 0.069 3.931
17 C -0.108 4.108
18 C -0.139 4.139
19 C -0.128 4.128
20 C -0.132 4.132
21 H 0.264 0.736
22 H -0.010 1.010
23 H -0.013 1.013
24 H 0.016 0.984
25 H 0.061 0.939
26 H 0.027 0.973
27 H 0.099 0.901
28 H 0.080 0.920
29 H 0.103 0.897
30 H 0.091 0.909
31 H 0.098 0.902
32 H 0.107 0.893
33 H 0.048 0.952
34 H 0.032 0.968
35 H 0.083 0.917
36 H 0.064 0.936
37 H 0.079 0.921
38 H 0.079 0.921
39 H 0.087 0.913
40 H 0.079 0.921
41 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.242 -17.775 0.178 18.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.196 4.196
3 Si 0.791 3.209
4 H -0.186 1.186
5 H -0.203 1.203
6 H -0.202 1.202
7 C -0.582 4.582
8 H 0.076 0.924
9 C 0.004 3.996
10 C -0.049 4.049
11 N -0.269 5.269
12 C -0.043 4.043
13 C -0.189 4.189
14 C -0.206 4.206
15 C -0.204 4.204
16 C -0.059 4.059
17 C -0.126 4.126
18 C -0.177 4.177
19 C -0.166 4.166
20 C -0.169 4.169
21 H 0.072 0.928
22 H 0.009 0.991
23 H 0.006 0.994
24 H 0.034 0.966
25 H 0.080 0.920
26 H 0.046 0.954
27 H 0.117 0.883
28 H 0.099 0.901
29 H 0.121 0.879
30 H 0.110 0.890
31 H 0.117 0.883
32 H 0.125 0.875
33 H 0.066 0.934
34 H 0.050 0.950
35 H 0.102 0.898
36 H 0.083 0.917
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.105 0.895
40 H 0.098 0.902
41 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 2.739 -17.609 -0.168 17.822
hybrid contribution 0.681 1.391 0.572 1.651
sum 3.420 -16.218 0.404 16.580
Atomic orbital electron populations
1.70126 1.07860 1.27677 1.51548 1.25969 0.95740 1.03324 0.94611
0.85382 0.79028 0.78651 0.77864 1.18590 1.20259 1.20239 1.21660
0.93420 0.92369 1.50768 0.92368 1.18851 0.94091 0.91966 0.94650
1.21981 0.95478 0.89089 0.98303 1.61987 1.32370 1.02737 1.29808
1.21846 0.94297 0.95245 0.92874 1.22258 1.06020 0.96249 0.94368
1.23027 0.97223 1.01049 0.99296 1.23036 0.92469 1.01599 1.03252
1.22084 0.96341 0.97805 0.89689 1.22580 0.97363 0.93473 0.99229
1.22945 0.99981 0.97343 0.97452 1.22751 0.97677 0.95493 1.00646
1.23067 0.97684 0.95242 1.00928 0.92770 0.99110 0.99420 0.96621
0.92018 0.95444 0.88330 0.90139 0.87857 0.89038 0.88341 0.87513
0.93352 0.94969 0.89823 0.91673 0.90258 0.90276 0.89485 0.90207
0.90708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16
2 C 0.00 0.08 5.46 84.65 0.46 0.54 16
3 Si 0.97 45.29 29.54 68.60 2.03 47.32 16
4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16
5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16
8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16
9 C 0.04 2.35 5.00 29.85 0.15 2.50 16
10 C 0.08 3.55 4.73 86.30 0.41 3.96 16
11 N -0.55 -20.59 4.41 -896.21 -3.95 -24.54 16
12 C 0.08 2.53 5.00 86.30 0.43 2.97 16
13 C -0.17 -4.98 5.57 -10.79 -0.06 -5.04 16
14 C -0.17 -3.97 10.18 30.62 0.31 -3.66 16
15 C -0.17 -3.64 10.26 30.62 0.31 -3.32 16
16 C 0.07 2.37 4.70 86.30 0.41 2.77 16
17 C -0.11 -2.93 3.50 -10.21 -0.04 -2.97 16
18 C -0.14 -3.21 7.64 31.12 0.24 -2.97 16
19 C -0.13 -2.33 8.09 31.12 0.25 -2.08 16
20 C -0.13 -2.72 5.78 31.18 0.18 -2.54 16
21 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16
22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
23 H -0.01 -0.76 6.95 -2.39 -0.02 -0.77 16
24 H 0.02 0.70 8.00 -2.39 -0.02 0.68 16
25 H 0.06 2.75 6.31 -2.39 -0.02 2.73 16
26 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16
27 H 0.10 2.52 4.25 -2.39 -0.01 2.51 16
28 H 0.08 2.86 6.73 -2.39 -0.02 2.84 16
29 H 0.10 2.13 8.03 -2.39 -0.02 2.11 16
30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16
32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16
33 H 0.05 1.97 6.71 -2.39 -0.02 1.96 16
34 H 0.03 1.04 7.83 -2.39 -0.02 1.02 16
35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16
36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
37 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16
38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16
40 H 0.08 1.61 7.90 -2.39 -0.02 1.59 16
41 H 0.07 1.40 7.28 -2.39 -0.02 1.39 16
Total: -1.00 -65.92 320.91 2.62 -63.30
By element:
Atomic # 1 Polarization: 12.83 SS G_CDS: 0.97 Total: 13.79 kcal
Atomic # 6 Polarization: -45.04 SS G_CDS: 3.29 Total: -41.75 kcal
Atomic # 7 Polarization: -79.00 SS G_CDS: -3.66 Total: -82.67 kcal
Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal
Total: -65.92 2.62 -63.30 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000361553505.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.296 kcal
(2) G-P(sol) polarization free energy of solvation -65.919 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.378 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds