Wall clock time and date at job start Sun Mar 29 2020 21:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00288 * 2 1 4 4 H 1.48500 * 109.46931 * 272.02509 * 3 2 1 5 5 H 1.48504 * 109.46987 * 32.02366 * 3 2 1 6 6 H 1.48494 * 109.46989 * 152.02304 * 3 2 1 7 7 C 1.38813 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00221 * 336.84150 * 7 2 1 9 9 N 1.36944 * 119.99828 * 156.84445 * 7 2 1 10 10 C 1.46497 * 119.99855 * 320.87334 * 9 7 2 11 11 C 1.52999 * 109.47136 * 270.00289 * 10 9 7 12 12 C 1.53006 * 109.47054 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47054 * 179.97438 * 12 11 10 14 14 C 1.54890 * 110.48601 * 68.24084 * 13 12 11 15 15 C 1.55241 * 102.58402 * 156.67429 * 14 13 12 16 16 C 1.54261 * 104.23616 * 322.08543 * 15 14 13 17 17 C 1.53877 * 106.59690 * 23.61300 * 16 15 14 18 18 C 1.46500 * 119.99916 * 140.87514 * 9 7 2 19 19 C 1.52996 * 117.50057 * 4.00797 * 18 9 7 20 20 C 1.52995 * 117.50152 * 295.38315 * 18 9 7 21 21 H 0.96999 * 120.00294 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47065 * 149.99991 * 10 9 7 23 23 H 1.09001 * 109.47017 * 30.00367 * 10 9 7 24 24 H 1.09001 * 109.47387 * 59.99899 * 11 10 9 25 25 H 1.09001 * 109.47230 * 299.99947 * 11 10 9 26 26 H 1.09003 * 109.46757 * 60.00160 * 12 11 10 27 27 H 1.09001 * 109.47080 * 300.00065 * 12 11 10 28 28 H 1.08998 * 110.43341 * 305.70349 * 13 12 11 29 29 H 1.08999 * 110.75879 * 275.06762 * 14 13 12 30 30 H 1.08996 * 110.75441 * 38.43911 * 14 13 12 31 31 H 1.09002 * 110.46900 * 203.39338 * 15 14 13 32 32 H 1.09004 * 110.57953 * 80.83664 * 15 14 13 33 33 H 1.08993 * 110.03406 * 264.32907 * 16 15 14 34 34 H 1.09005 * 110.07579 * 142.91442 * 16 15 14 35 35 H 1.09005 * 110.03081 * 240.71334 * 17 16 15 36 36 H 1.08998 * 110.07572 * 119.30359 * 17 16 15 37 37 H 1.08999 * 115.54425 * 149.71083 * 18 9 7 38 38 H 1.09001 * 117.50225 * 359.97438 * 19 18 9 39 39 H 1.09005 * 117.50244 * 145.02099 * 19 18 9 40 40 H 1.09001 * 117.49814 * 214.98332 * 20 18 9 41 41 H 1.09003 * 117.49803 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4549 2.0711 -1.3992 5 1 1.4697 2.6400 0.7424 6 1 3.5684 1.4281 0.6568 7 6 2.0101 -1.2022 0.0005 8 1 1.5354 -2.0996 0.3687 9 7 3.2968 -1.2502 -0.4658 10 6 3.6780 -0.4693 -1.6452 11 6 3.4613 -1.3097 -2.9052 12 6 3.8589 -0.4939 -4.1370 13 6 3.6428 -1.3345 -5.3970 14 6 2.1313 -1.5727 -5.6371 15 6 2.0722 -1.8602 -7.1615 16 6 3.1121 -0.8968 -7.7699 17 6 4.1108 -0.5626 -6.6480 18 6 4.2920 -2.0825 0.2147 19 6 3.8111 -2.9462 1.3824 20 6 4.6659 -1.7057 1.6496 21 1 -0.4850 0.8400 -0.0004 22 1 4.7289 -0.1893 -1.5714 23 1 3.0652 0.4305 -1.6988 24 1 2.4105 -1.5897 -2.9790 25 1 4.0742 -2.2095 -2.8516 26 1 4.9097 -0.2136 -4.0635 27 1 3.2458 0.4057 -4.1904 28 1 4.1705 -2.2848 -5.3156 29 1 1.7799 -2.4317 -5.0655 30 1 1.5556 -0.6809 -5.3894 31 1 1.0777 -1.6440 -7.5519 32 1 2.3449 -2.8953 -7.3671 33 1 2.6210 0.0127 -8.1157 34 1 3.6297 -1.3797 -8.5988 35 1 4.1044 0.5092 -6.4494 36 1 5.1131 -0.8835 -6.9315 37 1 5.0794 -2.4878 -0.4207 38 1 2.7544 -2.8950 1.6447 39 1 4.2822 -3.9202 1.5155 40 1 5.6993 -1.8635 1.9584 41 1 4.1717 -0.8383 2.0873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361565104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:52 Heat of formation + Delta-G solvation = 18.060618 kcal Electronic energy + Delta-G solvation = -17351.749215 eV Core-core repulsion = 14845.881608 eV Total energy + Delta-G solvation = -2505.867607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.35696 -37.19325 -34.33802 -32.54731 -30.92052 -28.60828 -27.97494 -24.72206 -23.44550 -21.59004 -21.08459 -20.13053 -19.62223 -19.47236 -16.35308 -15.72547 -15.45196 -15.24196 -14.74567 -14.20433 -13.63781 -13.26300 -13.00397 -12.79392 -12.34381 -12.21719 -11.90430 -11.40940 -11.14637 -10.99502 -10.88701 -10.80091 -10.67438 -10.47866 -10.44462 -10.27029 -10.21866 -10.06881 -9.76676 -9.57066 -9.38728 -9.33738 -8.45818 -6.64929 -6.00544 -3.41455 3.31055 3.46787 3.54376 4.52557 4.67680 4.76976 4.81037 4.85837 4.96809 5.29461 5.39842 5.52462 5.58931 5.71776 5.73743 5.77673 5.82841 5.85376 5.94773 5.99075 6.03509 6.09573 6.11434 6.18193 6.26623 6.37934 6.39885 6.45210 6.46231 6.49451 6.57161 6.62372 6.68860 6.96635 6.98977 7.14865 7.16918 8.08156 8.42329 9.02475 9.72324 10.14451 11.14608 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.006692 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.208097 B = 4182.974163 C = 4663.201911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.040 3.960 3 Si 0.872 3.128 4 H -0.283 1.283 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.138 3.862 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.089 4.089 14 C -0.119 4.119 15 C -0.126 4.126 16 C -0.124 4.124 17 C -0.122 4.122 18 C 0.121 3.879 19 C -0.189 4.189 20 C -0.226 4.226 21 H 0.263 0.737 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -2.212 -10.940 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.161 4.161 3 Si 0.702 3.298 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.098 0.902 9 N -0.294 5.294 10 C 0.013 3.987 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.107 4.107 14 C -0.157 4.157 15 C -0.164 4.164 16 C -0.162 4.162 17 C -0.160 4.160 18 C 0.012 3.988 19 C -0.227 4.227 20 C -0.267 4.267 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.973 -2.099 -10.951 13.707 hybrid contribution 0.398 1.028 0.135 1.110 sum 8.370 -1.071 -10.816 13.718 Atomic orbital electron populations 1.69871 1.05999 1.26748 1.51129 1.25493 0.95030 0.97691 0.97875 0.87035 0.80740 0.84759 0.77232 1.21120 1.22986 1.19274 1.18707 0.86378 0.94366 1.40044 0.90196 1.43712 1.06875 1.52037 1.26730 1.21211 0.97254 0.94265 0.85983 1.22092 1.02306 0.98598 0.94070 1.21632 1.00589 0.98637 0.94141 1.21994 0.96083 0.98619 0.94055 1.22631 0.96186 1.02023 0.94844 1.22424 0.98594 0.99032 0.96311 1.22120 0.96985 0.99239 0.97812 1.22227 0.98352 1.00424 0.94961 1.21160 0.94002 0.97184 0.86436 1.23044 1.01023 0.93380 1.05291 1.23372 0.98241 0.99552 1.05505 0.92704 0.94525 0.92614 0.91156 0.93137 0.92776 0.92294 0.91185 0.91286 0.91280 0.92082 0.92014 0.92224 0.92431 0.91908 0.92370 0.89201 0.87979 0.90579 0.90942 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.97 55.49 0.78 -26.41 16 2 C 0.04 1.15 5.28 -17.43 -0.09 1.06 16 3 Si 0.87 22.31 25.32 -169.99 -4.30 18.00 16 4 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.27 -7.36 8.93 -15.06 -0.13 -7.50 16 8 H 0.08 2.39 6.86 -52.49 -0.36 2.03 16 9 N -0.57 -13.69 2.38 -165.67 -0.39 -14.09 16 10 C 0.14 2.98 4.56 -4.04 -0.02 2.96 16 11 C -0.13 -2.44 5.40 -26.73 -0.14 -2.58 16 12 C -0.11 -1.74 4.56 -26.73 -0.12 -1.86 16 13 C -0.09 -1.20 2.87 -88.96 -0.25 -1.45 16 14 C -0.12 -1.65 5.62 -24.55 -0.14 -1.79 16 15 C -0.13 -1.45 6.84 -24.88 -0.17 -1.62 16 16 C -0.12 -1.33 6.80 -25.61 -0.17 -1.51 16 17 C -0.12 -1.42 6.37 -25.61 -0.16 -1.59 16 18 C 0.12 2.50 6.57 -67.93 -0.45 2.06 16 19 C -0.19 -3.71 9.80 -26.73 -0.26 -3.97 16 20 C -0.23 -4.45 10.35 -26.73 -0.28 -4.72 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.04 0.72 8.07 -51.93 -0.42 0.31 16 23 H 0.06 1.33 3.45 -51.93 -0.18 1.15 16 24 H 0.07 1.47 7.46 -51.93 -0.39 1.09 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.00 8.02 -51.93 -0.42 0.58 16 30 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.10 2.25 6.44 -51.93 -0.33 1.92 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -29.06 316.56 -9.13 -38.18 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.58 Total: 2.06 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.40 Total: -22.51 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.38 Total: -40.50 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.30 Total: 18.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.06 -9.13 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361565104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.245 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds